Wall clock time and date at job start Tue Mar 31 2020 03:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00082 * 2 1 4 4 H 1.48496 * 109.47008 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46883 * 59.99842 * 3 2 1 6 6 H 1.48496 * 109.47035 * 300.00140 * 3 2 1 7 7 C 1.38805 * 119.99643 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99876 * 207.28212 * 7 2 1 9 9 N 1.36938 * 120.00326 * 27.28488 * 7 2 1 10 10 C 1.47423 * 125.64840 * 13.30689 * 9 7 2 11 11 C 1.55125 * 104.72395 * 155.81746 * 10 9 7 12 12 H 1.09001 * 111.19051 * 279.19096 * 11 10 9 13 13 O 1.42902 * 110.93665 * 155.28677 * 11 10 9 14 14 C 1.55154 * 101.48572 * 37.29433 * 11 10 9 15 15 H 1.09003 * 110.71834 * 82.69257 * 14 11 10 16 16 C 1.52998 * 110.87269 * 205.89774 * 14 11 10 17 17 N 1.46495 * 109.47101 * 180.02562 * 16 14 11 18 18 C 1.34778 * 120.00075 * 180.02562 * 17 16 14 19 19 O 1.21624 * 120.00152 * 359.97438 * 18 17 16 20 20 C 1.47104 * 120.00249 * 180.02562 * 18 17 16 21 21 C 1.38382 * 127.99692 * 179.70626 * 20 18 17 22 22 C 1.37582 * 111.26052 * 179.82490 * 21 20 18 23 23 N 1.29561 * 117.95183 * 0.50219 * 22 21 20 24 24 S 1.56309 * 110.37680 * 359.71206 * 23 22 21 25 25 C 1.47022 * 125.65145 * 193.61334 * 9 7 2 26 26 H 0.96994 * 120.00297 * 185.84782 * 1 2 3 27 27 H 1.09002 * 110.36499 * 274.75332 * 10 9 7 28 28 H 1.09005 * 110.36367 * 37.06338 * 10 9 7 29 29 H 0.96700 * 113.99787 * 67.96452 * 13 11 10 30 30 H 1.08998 * 109.47073 * 300.06479 * 16 14 11 31 31 H 1.08995 * 109.47340 * 60.06701 * 16 14 11 32 32 H 0.97009 * 120.00648 * 0.02562 * 17 16 14 33 33 H 1.08000 * 124.37253 * 359.97438 * 21 20 18 34 34 H 1.08003 * 121.02985 * 180.19552 * 22 21 20 35 35 H 1.08999 * 109.88184 * 300.44569 * 25 9 7 36 36 H 1.09000 * 109.87675 * 61.44592 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 1.2125 6 1 1.8915 2.3964 -1.2125 7 6 2.0101 -1.2021 0.0005 8 1 3.0000 -1.2540 0.4293 9 7 1.4397 -2.3223 -0.5426 10 6 0.2378 -2.3469 -1.3960 11 6 0.3682 -3.6527 -2.2231 12 1 1.0380 -3.5161 -3.0722 13 8 -0.9137 -4.1141 -2.6544 14 6 0.9848 -4.6199 -1.1784 15 1 0.2095 -5.0425 -0.5393 16 6 1.7809 -5.7305 -1.8668 17 7 2.3478 -6.6245 -0.8542 18 6 3.0935 -7.6822 -1.2307 19 8 3.2953 -7.8948 -2.4111 20 6 3.6624 -8.5803 -0.2139 21 6 4.4404 -9.7074 -0.4122 22 6 4.7902 -10.2890 0.7845 23 7 4.3591 -9.7395 1.8757 24 16 3.5036 -8.4734 1.5464 25 6 1.9207 -3.7004 -0.3661 26 1 -0.4850 -0.8356 0.0856 27 1 -0.6627 -2.3720 -0.7823 28 1 0.2237 -1.4797 -2.0563 29 1 -1.3382 -3.5417 -3.3080 30 1 1.1208 -6.2969 -2.5238 31 1 2.5867 -5.2897 -2.4536 32 1 2.1866 -6.4553 0.0873 33 1 4.7369 -10.0808 -1.3813 34 1 5.4011 -11.1792 0.8133 35 1 2.9412 -3.7874 -0.7390 36 1 1.8874 -3.9723 0.6889 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958117156.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:07 Heat of formation + Delta-G solvation = -14.746261 kcal Electronic energy + Delta-G solvation = -21283.797068 eV Core-core repulsion = 17895.613564 eV Total energy + Delta-G solvation = -3388.183503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.093 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.11747 -39.22115 -38.38261 -35.42927 -34.94109 -32.59892 -31.79298 -29.76393 -27.92254 -26.57427 -25.19589 -23.71568 -22.04843 -20.75565 -20.30059 -19.86377 -18.76907 -17.66811 -17.40143 -16.86380 -15.97784 -15.68855 -15.26816 -14.83653 -14.62672 -14.29502 -13.87811 -13.70959 -13.60538 -13.55572 -13.10028 -12.53329 -12.27390 -12.05741 -11.67232 -11.22448 -11.08364 -10.98868 -10.76940 -10.59394 -10.38697 -10.10767 -10.04118 -10.02632 -9.79504 -9.40454 -9.24791 -9.12570 -8.50108 -7.06763 -6.17597 -3.22112 -0.00836 0.96601 1.55367 1.90843 2.86251 2.90499 3.47804 3.50475 3.63880 4.30754 4.42780 4.55036 4.65301 4.76480 4.85726 4.99926 5.19647 5.28962 5.33021 5.48697 5.51166 5.63796 5.72581 5.80617 5.97187 6.10924 6.14820 6.21395 6.41195 6.59679 6.76703 6.87214 7.24162 7.66047 7.91210 7.92100 8.39271 8.92231 9.72341 10.23659 11.15688 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.019882 B = 0.003502 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.003976 B = 7994.387082 C = 8852.537244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.025 4.025 3 Si 1.070 2.930 4 H -0.292 1.292 5 H -0.294 1.294 6 H -0.289 1.289 7 C -0.339 4.339 8 H 0.069 0.931 9 N -0.600 5.600 10 C 0.119 3.881 11 C 0.092 3.908 12 H 0.067 0.933 13 O -0.566 6.566 14 C -0.106 4.106 15 H 0.090 0.910 16 C 0.134 3.866 17 N -0.716 5.716 18 C 0.595 3.405 19 O -0.525 6.525 20 C -0.267 4.267 21 C -0.112 4.112 22 C 0.057 3.943 23 N -0.519 5.519 24 S 0.426 5.574 25 C 0.140 3.860 26 H 0.270 0.730 27 H 0.036 0.964 28 H 0.056 0.944 29 H 0.378 0.622 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.401 0.599 33 H 0.176 0.824 34 H 0.184 0.816 35 H 0.032 0.968 36 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.058 -17.406 -1.175 18.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.226 4.226 3 Si 0.899 3.101 4 H -0.218 1.218 5 H -0.221 1.221 6 H -0.216 1.216 7 C -0.466 4.466 8 H 0.087 0.913 9 N -0.329 5.329 10 C -0.007 4.007 11 C 0.031 3.969 12 H 0.085 0.915 13 O -0.370 6.370 14 C -0.126 4.126 15 H 0.108 0.892 16 C 0.011 3.989 17 N -0.367 5.367 18 C 0.379 3.621 19 O -0.402 6.402 20 C -0.401 4.401 21 C -0.147 4.147 22 C -0.135 4.135 23 N -0.349 5.349 24 S 0.580 5.420 25 C 0.014 3.986 26 H 0.082 0.918 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.226 0.774 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.235 0.765 33 H 0.193 0.807 34 H 0.201 0.799 35 H 0.050 0.950 36 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 4.696 -15.668 0.402 16.362 hybrid contribution 0.676 -1.976 -1.272 2.445 sum 5.373 -17.644 -0.870 18.465 Atomic orbital electron populations 1.70737 1.06632 1.30394 1.48351 1.25758 0.96456 1.01026 0.99393 0.83470 0.74357 0.75493 0.76752 1.21795 1.22103 1.21613 1.19818 0.99476 0.87543 1.39801 0.91274 1.44399 1.30899 1.01156 1.56423 1.22224 0.91132 0.94542 0.92815 1.23081 0.84022 0.94370 0.95388 0.91516 1.86409 1.33447 1.53159 1.64025 1.22422 0.97945 0.94588 0.97612 0.89203 1.21477 0.97246 0.90031 0.90099 1.45893 1.52288 1.27427 1.11095 1.16702 0.78411 0.80059 0.86905 1.90827 1.59574 1.72757 1.17074 1.26920 1.08654 1.03061 1.01426 1.22132 0.97573 0.94029 1.00991 1.22303 1.02487 1.02860 0.85887 1.72226 1.17588 1.12515 1.32607 1.81836 1.42069 1.22283 0.95825 1.21404 0.95338 0.85405 0.96437 0.91819 0.94609 0.92529 0.77445 0.90569 0.90724 0.76451 0.80696 0.79921 0.95006 0.95491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.14 12.82 55.49 0.71 -26.43 16 2 C -0.02 -0.70 5.09 -17.43 -0.09 -0.78 16 3 Si 1.07 24.89 30.00 -169.99 -5.10 19.80 16 4 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.34 -9.31 10.05 -15.06 -0.15 -9.46 16 8 H 0.07 1.89 7.96 -52.49 -0.42 1.47 16 9 N -0.60 -14.60 3.33 -169.94 -0.57 -15.17 16 10 C 0.12 2.64 4.96 -2.41 -0.01 2.63 16 11 C 0.09 1.58 3.89 -24.47 -0.10 1.48 16 12 H 0.07 1.10 8.05 -51.93 -0.42 0.68 16 13 O -0.57 -8.78 13.47 -35.23 -0.47 -9.26 16 14 C -0.11 -1.71 2.74 -88.79 -0.24 -1.95 16 15 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 16 C 0.13 1.89 5.01 -4.05 -0.02 1.87 16 17 N -0.72 -8.99 5.40 -61.50 -0.33 -9.32 16 18 C 0.60 7.96 7.80 -12.66 -0.10 7.86 16 19 O -0.53 -8.65 16.96 5.26 0.09 -8.56 16 20 C -0.27 -2.92 6.76 -35.93 -0.24 -3.16 16 21 C -0.11 -1.03 10.40 -39.77 -0.41 -1.44 16 22 C 0.06 0.48 11.15 -18.75 -0.21 0.27 16 23 N -0.52 -5.40 11.29 21.64 0.24 -5.16 16 24 S 0.43 4.07 22.81 -107.50 -2.45 1.62 16 25 C 0.14 2.70 6.52 -3.07 -0.02 2.68 16 26 H 0.27 7.96 5.83 -40.82 -0.24 7.72 16 27 H 0.04 0.87 6.84 -51.93 -0.36 0.51 16 28 H 0.06 1.36 7.73 -51.93 -0.40 0.96 16 29 H 0.38 4.39 9.12 45.56 0.42 4.80 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 1.10 8.06 -51.93 -0.42 0.69 16 32 H 0.40 4.35 7.71 -40.82 -0.31 4.04 16 33 H 0.18 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.18 0.95 8.06 -52.48 -0.42 0.52 16 35 H 0.03 0.61 7.77 -51.93 -0.40 0.21 16 36 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 321.37 15.07 4.84 4.84 Total: -1.00 -33.99 321.37 -8.09 -42.08 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -3.46 Total: 5.56 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -1.60 Total: 0.00 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 0.06 Total: -56.08 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.39 Total: -17.82 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.10 Total: 19.80 kcal Atomic # 16 Polarization: 4.07 SS G_CDS: -2.45 Total: 1.62 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.99 -8.09 -42.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958117156.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.336 kcal (2) G-P(sol) polarization free energy of solvation -33.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds