Wall clock time and date at job start Tue Mar 31 2020 03:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00109 * 2 1 4 4 H 1.48501 * 109.47398 * 265.21289 * 3 2 1 5 5 H 1.48505 * 109.47087 * 25.21315 * 3 2 1 6 6 H 1.48497 * 109.47418 * 145.20903 * 3 2 1 7 7 C 1.38819 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99487 * 332.96131 * 7 2 1 9 9 N 1.36933 * 120.00112 * 152.96759 * 7 2 1 10 10 C 1.47018 * 125.64784 * 349.71233 * 9 7 2 11 11 C 1.54326 * 107.27077 * 181.02679 * 10 9 7 12 12 H 1.09002 * 110.71842 * 140.55791 * 11 10 9 13 13 O 1.42904 * 110.72002 * 263.65203 * 11 10 9 14 14 C 1.55157 * 102.94369 * 22.19167 * 11 10 9 15 15 H 1.09008 * 110.99798 * 82.60596 * 14 11 10 16 16 C 1.52992 * 111.00817 * 206.42316 * 14 11 10 17 17 N 1.46498 * 109.47405 * 184.99906 * 16 14 11 18 18 C 1.34773 * 120.00288 * 180.02562 * 17 16 14 19 19 O 1.21629 * 119.99908 * 0.02562 * 18 17 16 20 20 C 1.47245 * 120.00496 * 180.02562 * 18 17 16 21 21 N 1.30560 * 125.54862 * 180.02562 * 20 18 17 22 22 C 1.30705 * 115.90984 * 179.97438 * 21 20 18 23 23 C 1.34233 * 115.78294 * 359.97438 * 22 21 20 24 24 S 1.71071 * 109.09223 * 359.72632 * 23 22 21 25 25 C 1.47423 * 125.64945 * 169.41225 * 9 7 2 26 26 H 0.97003 * 120.00055 * 185.05492 * 1 2 3 27 27 H 1.09007 * 109.88511 * 300.44289 * 10 9 7 28 28 H 1.09001 * 109.88234 * 61.45604 * 10 9 7 29 29 H 0.96704 * 113.99795 * 298.54437 * 13 11 10 30 30 H 1.09000 * 109.47324 * 305.00370 * 16 14 11 31 31 H 1.08999 * 109.46874 * 64.99738 * 16 14 11 32 32 H 0.96994 * 119.99768 * 0.02562 * 17 16 14 33 33 H 1.08000 * 122.10431 * 180.02562 * 22 21 20 34 34 H 1.08000 * 125.45387 * 180.02562 * 23 22 21 35 35 H 1.09001 * 110.36532 * 274.74464 * 25 9 7 36 36 H 1.08998 * 110.36633 * 37.06085 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5989 1.9880 -1.3952 5 1 1.4007 2.6798 0.5964 6 1 3.4934 1.4716 0.7988 7 6 2.0103 -1.2022 -0.0005 8 1 1.5588 -2.0865 0.4243 9 7 3.2674 -1.2667 -0.5395 10 6 3.9144 -0.2119 -1.3335 11 6 5.3056 -0.7372 -1.7460 12 1 5.5407 -0.4441 -2.7692 13 8 6.3106 -0.2691 -0.8444 14 6 5.1415 -2.2764 -1.6399 15 1 4.6771 -2.6826 -2.5386 16 6 6.4857 -2.9539 -1.3666 17 7 6.3136 -4.4085 -1.3914 18 6 7.3705 -5.2160 -1.1741 19 8 8.4673 -4.7371 -0.9571 20 6 7.1976 -6.6781 -1.1995 21 7 8.1424 -7.5576 -1.0039 22 6 7.7780 -8.8112 -1.0686 23 6 6.4790 -9.0290 -1.3275 24 16 5.6808 -7.5246 -1.4895 25 6 4.1986 -2.4027 -0.4146 26 1 -0.4850 -0.8368 0.0740 27 1 3.3200 0.0006 -2.2221 28 1 4.0199 0.6919 -0.7333 29 1 6.3982 0.6937 -0.8185 30 1 7.2032 -2.6598 -2.1327 31 1 6.8542 -2.6482 -0.3874 32 1 5.4389 -4.7904 -1.5641 33 1 8.4778 -9.6207 -0.9222 34 1 6.0116 -9.9987 -1.4143 35 1 4.7662 -2.3277 0.5130 36 1 3.6535 -3.3459 -0.4514 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958518926.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:46 Heat of formation + Delta-G solvation = 1.369369 kcal Electronic energy + Delta-G solvation = -21437.261891 eV Core-core repulsion = 18049.777214 eV Total energy + Delta-G solvation = -3387.484677 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.093 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.39908 -39.37397 -38.51620 -35.23790 -34.86242 -32.43588 -31.16098 -30.18482 -28.18547 -26.99921 -25.38246 -23.39009 -21.85490 -20.98364 -20.28747 -19.72336 -19.03790 -17.88136 -17.18755 -16.69223 -16.05930 -15.75707 -15.48934 -15.21975 -14.49372 -14.43382 -14.15529 -13.83016 -13.70873 -13.48794 -13.18838 -12.81799 -12.40064 -12.00329 -11.93414 -11.28370 -11.11623 -10.89085 -10.71900 -10.67895 -10.31020 -10.06562 -9.98308 -9.91213 -9.44992 -9.37952 -9.22331 -9.12508 -8.49909 -7.17615 -6.38902 -3.24384 -0.08914 0.82146 1.25207 2.09125 2.65955 3.01957 3.33038 3.46876 3.63583 4.14654 4.34604 4.53577 4.62083 4.70844 4.72630 4.95713 5.02658 5.06036 5.11210 5.38965 5.53179 5.62424 5.66995 5.73455 6.02619 6.05547 6.19266 6.28824 6.41686 6.49468 6.70738 7.05798 7.35649 7.62269 7.85515 7.92045 8.27594 8.97227 9.52605 10.18881 11.09534 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.025103 B = 0.003626 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.139927 B = 7720.928804 C = 8633.256906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.020 4.020 3 Si 1.068 2.932 4 H -0.295 1.295 5 H -0.299 1.299 6 H -0.291 1.291 7 C -0.332 4.332 8 H 0.078 0.922 9 N -0.605 5.605 10 C 0.087 3.913 11 C 0.102 3.898 12 H 0.068 0.932 13 O -0.558 6.558 14 C -0.111 4.111 15 H 0.096 0.904 16 C 0.142 3.858 17 N -0.716 5.716 18 C 0.592 3.408 19 O -0.500 6.500 20 C -0.002 4.002 21 N -0.402 5.402 22 C 0.027 3.973 23 C -0.265 4.265 24 S 0.188 5.812 25 C 0.141 3.859 26 H 0.263 0.737 27 H 0.048 0.952 28 H 0.035 0.965 29 H 0.378 0.622 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.399 0.601 33 H 0.181 0.819 34 H 0.186 0.814 35 H 0.031 0.969 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.105 -14.099 -6.288 19.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.221 4.221 3 Si 0.902 3.098 4 H -0.223 1.223 5 H -0.227 1.227 6 H -0.219 1.219 7 C -0.459 4.459 8 H 0.095 0.905 9 N -0.332 5.332 10 C -0.039 4.039 11 C 0.042 3.958 12 H 0.086 0.914 13 O -0.364 6.364 14 C -0.130 4.130 15 H 0.114 0.886 16 C 0.019 3.981 17 N -0.369 5.369 18 C 0.373 3.627 19 O -0.373 6.373 20 C -0.279 4.279 21 N -0.118 5.118 22 C -0.130 4.130 23 C -0.406 4.406 24 S 0.441 5.559 25 C 0.015 3.985 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.226 0.774 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.234 0.766 33 H 0.198 0.802 34 H 0.203 0.797 35 H 0.048 0.952 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 12.184 -12.197 -6.125 18.295 hybrid contribution 0.175 -2.217 0.093 2.226 sum 12.359 -14.414 -6.031 19.922 Atomic orbital electron populations 1.70924 1.05830 1.30037 1.48967 1.25801 0.96352 1.00838 0.99114 0.83739 0.73977 0.76032 0.76067 1.22265 1.22695 1.21921 1.20030 0.88890 0.97263 1.39687 0.90454 1.44742 1.14166 1.14067 1.60272 1.22434 0.92341 0.93295 0.95781 1.22699 0.87690 0.93388 0.91987 0.91398 1.86444 1.57316 1.26920 1.65753 1.22767 0.95216 0.93888 1.01178 0.88586 1.21276 0.97016 0.75968 1.03801 1.45891 1.10689 1.07948 1.72367 1.16656 0.85020 0.82757 0.78239 1.90868 1.24768 1.74733 1.46971 1.27635 0.91861 0.98854 1.09514 1.66640 1.32836 1.00774 1.11537 1.21889 0.94620 0.93387 1.03084 1.26818 0.99147 1.04616 1.09983 1.84046 1.13196 0.97156 1.61487 1.21685 0.90531 0.92254 0.94016 0.92653 0.93446 0.94777 0.77405 0.90835 0.89594 0.76602 0.80239 0.79718 0.95153 0.93834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.14 13.70 55.49 0.76 -27.38 16 2 C -0.02 -0.58 5.43 -17.43 -0.09 -0.68 16 3 Si 1.07 26.16 24.66 -169.99 -4.19 21.96 16 4 H -0.29 -6.67 6.76 56.52 0.38 -6.29 16 5 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.29 -6.86 6.71 56.52 0.38 -6.48 16 7 C -0.33 -9.26 10.43 -15.06 -0.16 -9.41 16 8 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 9 N -0.60 -14.28 3.29 -169.94 -0.56 -14.83 16 10 C 0.09 1.78 4.71 -3.06 -0.01 1.77 16 11 C 0.10 1.60 4.08 -24.89 -0.10 1.49 16 12 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 13 O -0.56 -8.46 12.27 -35.23 -0.43 -8.89 16 14 C -0.11 -1.65 2.99 -88.36 -0.26 -1.92 16 15 H 0.10 1.28 8.14 -51.92 -0.42 0.86 16 16 C 0.14 1.97 4.60 -4.05 -0.02 1.95 16 17 N -0.72 -8.96 5.50 -61.45 -0.34 -9.30 16 18 C 0.59 8.56 7.81 -12.60 -0.10 8.46 16 19 O -0.50 -9.11 17.07 5.25 0.09 -9.02 16 20 C 0.00 -0.03 7.46 -14.43 -0.11 -0.14 16 21 N -0.40 -5.26 10.59 -11.51 -0.12 -5.38 16 22 C 0.03 0.25 11.24 -19.44 -0.22 0.03 16 23 C -0.26 -1.93 11.09 29.32 0.33 -1.60 16 24 S 0.19 1.59 22.31 -107.50 -2.40 -0.81 16 25 C 0.14 2.68 6.65 -2.41 -0.02 2.67 16 26 H 0.26 7.97 8.73 -40.82 -0.36 7.61 16 27 H 0.05 1.00 7.82 -51.92 -0.41 0.59 16 28 H 0.04 0.74 3.67 -51.93 -0.19 0.55 16 29 H 0.38 4.32 9.10 45.56 0.41 4.74 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.09 1.37 7.55 -51.93 -0.39 0.98 16 32 H 0.40 4.17 7.62 -40.82 -0.31 3.86 16 33 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.19 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.03 0.62 7.91 -51.93 -0.41 0.21 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 315.59 15.07 4.76 4.76 Total: -1.00 -35.82 315.59 -6.65 -42.47 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -3.45 Total: 3.80 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -0.77 Total: 2.63 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: -0.26 Total: -56.90 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.34 Total: -17.91 kcal Atomic # 14 Polarization: 26.16 SS G_CDS: -4.19 Total: 21.96 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.40 Total: -0.81 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -35.82 -6.65 -42.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958518926.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.836 kcal (2) G-P(sol) polarization free energy of solvation -35.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds