Wall clock time and date at job start Tue Mar 31 2020 03:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00109 * 2 1 4 4 H 1.48501 * 109.47398 * 265.21289 * 3 2 1 5 5 H 1.48505 * 109.47087 * 25.21315 * 3 2 1 6 6 H 1.48497 * 109.47418 * 145.20903 * 3 2 1 7 7 C 1.38819 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99487 * 332.96131 * 7 2 1 9 9 N 1.36933 * 120.00112 * 152.96759 * 7 2 1 10 10 C 1.47018 * 125.64784 * 349.71233 * 9 7 2 11 11 C 1.54326 * 107.27077 * 181.02679 * 10 9 7 12 12 H 1.09002 * 110.71842 * 140.55791 * 11 10 9 13 13 O 1.42904 * 110.72002 * 263.65203 * 11 10 9 14 14 C 1.55157 * 102.94369 * 22.19167 * 11 10 9 15 15 H 1.09008 * 110.99798 * 82.60596 * 14 11 10 16 16 C 1.52992 * 111.00817 * 206.42316 * 14 11 10 17 17 N 1.46498 * 109.47405 * 184.99906 * 16 14 11 18 18 C 1.34773 * 120.00288 * 180.02562 * 17 16 14 19 19 O 1.21629 * 119.99908 * 0.02562 * 18 17 16 20 20 C 1.47245 * 120.00496 * 180.02562 * 18 17 16 21 21 N 1.30560 * 125.54862 * 180.02562 * 20 18 17 22 22 C 1.30705 * 115.90984 * 179.97438 * 21 20 18 23 23 C 1.34233 * 115.78294 * 359.97438 * 22 21 20 24 24 S 1.71071 * 109.09223 * 359.72632 * 23 22 21 25 25 C 1.47423 * 125.64945 * 169.41225 * 9 7 2 26 26 H 0.97003 * 120.00055 * 185.05492 * 1 2 3 27 27 H 1.09007 * 109.88511 * 300.44289 * 10 9 7 28 28 H 1.09001 * 109.88234 * 61.45604 * 10 9 7 29 29 H 0.96704 * 113.99795 * 298.54437 * 13 11 10 30 30 H 1.09000 * 109.47324 * 305.00370 * 16 14 11 31 31 H 1.08999 * 109.46874 * 64.99738 * 16 14 11 32 32 H 0.96994 * 119.99768 * 0.02562 * 17 16 14 33 33 H 1.08000 * 122.10431 * 180.02562 * 22 21 20 34 34 H 1.08000 * 125.45387 * 180.02562 * 23 22 21 35 35 H 1.09001 * 110.36532 * 274.74464 * 25 9 7 36 36 H 1.08998 * 110.36633 * 37.06085 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5989 1.9880 -1.3952 5 1 1.4007 2.6798 0.5964 6 1 3.4934 1.4716 0.7988 7 6 2.0103 -1.2022 -0.0005 8 1 1.5588 -2.0865 0.4243 9 7 3.2674 -1.2667 -0.5395 10 6 3.9144 -0.2119 -1.3335 11 6 5.3056 -0.7372 -1.7460 12 1 5.5407 -0.4441 -2.7692 13 8 6.3106 -0.2691 -0.8444 14 6 5.1415 -2.2764 -1.6399 15 1 4.6771 -2.6826 -2.5386 16 6 6.4857 -2.9539 -1.3666 17 7 6.3136 -4.4085 -1.3914 18 6 7.3705 -5.2160 -1.1741 19 8 8.4673 -4.7371 -0.9571 20 6 7.1976 -6.6781 -1.1995 21 7 8.1424 -7.5576 -1.0039 22 6 7.7780 -8.8112 -1.0686 23 6 6.4790 -9.0290 -1.3275 24 16 5.6808 -7.5246 -1.4895 25 6 4.1986 -2.4027 -0.4146 26 1 -0.4850 -0.8368 0.0740 27 1 3.3200 0.0006 -2.2221 28 1 4.0199 0.6919 -0.7333 29 1 6.3982 0.6937 -0.8185 30 1 7.2032 -2.6598 -2.1327 31 1 6.8542 -2.6482 -0.3874 32 1 5.4389 -4.7904 -1.5641 33 1 8.4778 -9.6207 -0.9222 34 1 6.0116 -9.9987 -1.4143 35 1 4.7662 -2.3277 0.5130 36 1 3.6535 -3.3459 -0.4514 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958518926.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:46 Heat of formation + Delta-G solvation = -30.182642 kcal Electronic energy + Delta-G solvation = -21438.630089 eV Core-core repulsion = 18049.777214 eV Total energy + Delta-G solvation = -3388.852875 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.093 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.34373 -40.45125 -39.74890 -36.53657 -36.26786 -34.26847 -32.34784 -31.33290 -29.68399 -28.13097 -26.71252 -24.83454 -22.92737 -22.53076 -21.56987 -20.70791 -19.98542 -19.63591 -18.42084 -17.81419 -17.09903 -17.09043 -16.73175 -16.10409 -15.99637 -15.69203 -15.30758 -15.18792 -15.05742 -14.58758 -14.40823 -14.32279 -13.99230 -13.44854 -12.95700 -12.82315 -12.59737 -12.38423 -12.21156 -11.84216 -11.73538 -11.58916 -11.25101 -10.84664 -10.79054 -10.78328 -10.56391 -10.37058 -9.95243 -9.17753 -8.63582 -5.41944 -0.85691 0.08255 0.57464 1.26288 1.37214 1.52878 1.68021 1.71541 2.08973 2.51151 3.00817 3.18677 3.30765 3.36947 3.68710 3.75116 3.83355 3.88118 4.25571 4.27991 4.32818 4.35671 4.52828 4.64157 4.75029 4.83725 4.91128 5.00125 5.04239 5.15008 5.30305 5.57381 6.10673 6.13181 6.57290 6.82562 6.86789 6.91010 7.47384 8.12582 8.85351 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.025103 B = 0.003626 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.139927 B = 7720.928804 C = 8633.256906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.078 4.078 3 Si 1.110 2.890 4 H -0.263 1.263 5 H -0.310 1.310 6 H -0.280 1.280 7 C -0.321 4.321 8 H 0.047 0.953 9 N -0.626 5.626 10 C 0.074 3.926 11 C 0.114 3.886 12 H 0.111 0.889 13 O -0.569 6.569 14 C -0.095 4.095 15 H 0.121 0.879 16 C 0.153 3.847 17 N -0.706 5.706 18 C 0.593 3.407 19 O -0.550 6.550 20 C -0.052 4.052 21 N -0.437 5.437 22 C 0.007 3.993 23 C -0.240 4.240 24 S 0.242 5.758 25 C 0.136 3.864 26 H 0.249 0.751 27 H 0.044 0.956 28 H 0.030 0.970 29 H 0.395 0.605 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.410 0.590 33 H 0.205 0.795 34 H 0.225 0.775 35 H 0.016 0.984 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.233 -15.200 -7.949 21.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.272 4.272 3 Si 0.938 3.062 4 H -0.188 1.188 5 H -0.239 1.239 6 H -0.207 1.207 7 C -0.450 4.450 8 H 0.065 0.935 9 N -0.353 5.353 10 C -0.050 4.050 11 C 0.054 3.946 12 H 0.128 0.872 13 O -0.377 6.377 14 C -0.114 4.114 15 H 0.138 0.862 16 C 0.030 3.970 17 N -0.358 5.358 18 C 0.376 3.624 19 O -0.428 6.428 20 C -0.325 4.325 21 N -0.155 5.155 22 C -0.150 4.150 23 C -0.381 4.381 24 S 0.494 5.506 25 C 0.011 3.989 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.246 0.754 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.247 0.753 33 H 0.222 0.778 34 H 0.242 0.758 35 H 0.034 0.966 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.329 -13.309 -7.811 20.392 hybrid contribution -0.245 -2.102 0.659 2.217 sum 13.084 -15.411 -7.151 21.444 Atomic orbital electron populations 1.71033 1.07044 1.29257 1.52364 1.27020 0.96366 1.04303 0.99496 0.83195 0.72980 0.72108 0.77893 1.18830 1.23899 1.20657 1.19951 0.90803 0.96047 1.38152 0.93520 1.44844 1.13660 1.16408 1.60438 1.22697 0.94950 0.92495 0.94896 1.22709 0.84985 0.93073 0.93875 0.87153 1.86435 1.56599 1.28737 1.65979 1.22688 0.94547 0.94297 0.99871 0.86152 1.21057 0.96421 0.76559 1.02943 1.45749 1.10945 1.07422 1.71720 1.16975 0.84443 0.83923 0.77064 1.90823 1.26523 1.76003 1.49414 1.27200 0.94220 0.97965 1.13129 1.66608 1.34513 1.02368 1.11984 1.22297 0.96107 0.92723 1.03826 1.27373 0.98345 1.05821 1.06533 1.83838 1.10272 0.96853 1.59593 1.21815 0.90488 0.90981 0.95586 0.94139 0.93786 0.95303 0.75422 0.89718 0.91825 0.75317 0.77846 0.75803 0.96572 0.93441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.13 13.70 21.65 0.30 -59.84 16 2 C -0.08 -4.53 5.43 84.86 0.46 -4.07 16 3 Si 1.11 52.56 24.66 68.60 1.69 54.25 16 4 H -0.26 -10.96 6.76 99.48 0.67 -10.29 16 5 H -0.31 -15.14 7.11 99.48 0.71 -14.43 16 6 H -0.28 -12.50 6.71 99.48 0.67 -11.84 16 7 C -0.32 -18.21 10.43 84.04 0.88 -17.33 16 8 H 0.05 2.85 8.06 -2.91 -0.02 2.83 16 9 N -0.63 -29.07 3.29 -691.55 -2.27 -31.35 16 10 C 0.07 2.86 4.71 86.73 0.41 3.27 16 11 C 0.11 3.14 4.08 31.78 0.13 3.27 16 12 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 13 O -0.57 -15.55 12.27 -148.98 -1.83 -17.38 16 14 C -0.09 -2.57 2.99 -9.33 -0.03 -2.60 16 15 H 0.12 2.74 8.14 -2.38 -0.02 2.72 16 16 C 0.15 3.99 4.60 86.38 0.40 4.39 16 17 N -0.71 -16.85 5.50 -466.56 -2.57 -19.41 16 18 C 0.59 17.10 7.81 86.61 0.68 17.78 16 19 O -0.55 -20.54 17.07 -4.12 -0.07 -20.61 16 20 C -0.05 -1.26 7.46 87.25 0.65 -0.61 16 21 N -0.44 -11.19 10.59 -190.31 -2.02 -13.21 16 22 C 0.01 0.11 11.24 83.95 0.94 1.05 16 23 C -0.24 -2.63 11.09 66.91 0.74 -1.89 16 24 S 0.24 3.47 22.31 -56.49 -1.26 2.21 16 25 C 0.14 5.05 6.65 86.93 0.58 5.63 16 26 H 0.25 15.76 8.73 -92.71 -0.81 14.95 16 27 H 0.04 1.74 7.82 -2.38 -0.02 1.72 16 28 H 0.03 1.18 3.67 -2.39 -0.01 1.17 16 29 H 0.40 7.71 9.10 -74.05 -0.67 7.04 16 30 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 31 H 0.06 1.99 7.55 -2.39 -0.02 1.97 16 32 H 0.41 7.84 7.62 -92.71 -0.71 7.13 16 33 H 0.20 2.04 8.06 -2.91 -0.02 2.01 16 34 H 0.23 0.59 8.06 -2.91 -0.02 0.57 16 35 H 0.02 0.66 7.91 -2.39 -0.02 0.64 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -81.74 315.59 -2.54 -84.28 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -0.36 Total: 12.15 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 5.84 Total: 8.90 kcal Atomic # 7 Polarization: -117.25 SS G_CDS: -6.56 Total: -123.81 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -1.90 Total: -37.99 kcal Atomic # 14 Polarization: 52.56 SS G_CDS: 1.69 Total: 54.25 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -1.26 Total: 2.21 kcal Total: -81.74 -2.54 -84.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958518926.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.099 kcal (2) G-P(sol) polarization free energy of solvation -81.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds