Wall clock time and date at job start Tue Mar 31 2020 03:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32563 * 121.64895 * 2 1 4 4 S 1.77235 * 105.31920 * 180.19909 * 3 2 1 5 5 C 1.72203 * 94.84864 * 359.76236 * 4 3 2 6 6 O 1.21830 * 127.05745 * 180.02562 * 5 4 3 7 7 N 1.34251 * 105.88632 * 0.02562 * 5 4 3 8 8 C 1.46493 * 121.38108 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47578 * 90.02369 * 8 7 5 10 10 O 1.21281 * 119.99681 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00304 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00168 * 180.02562 * 11 9 8 13 13 C 1.53495 * 114.20561 * 155.00314 * 12 11 9 14 14 N 1.47064 * 87.98647 * 87.71568 * 13 12 11 15 15 C 1.36929 * 136.05710 * 207.07951 * 14 13 12 16 16 H 1.08003 * 120.00152 * 6.50021 * 15 14 13 17 17 C 1.38818 * 120.00175 * 186.49548 * 15 14 13 18 18 N 1.31615 * 119.99847 * 6.43003 * 17 15 14 19 19 Si 1.86802 * 119.99925 * 186.42380 * 17 15 14 20 20 H 1.48502 * 109.46990 * 265.01960 * 19 17 15 21 21 H 1.48491 * 109.47236 * 25.02406 * 19 17 15 22 22 H 1.48506 * 109.46777 * 145.02360 * 19 17 15 23 23 C 1.47067 * 87.88549 * 27.33957 * 14 13 12 24 24 H 1.09000 * 109.46860 * 270.24513 * 1 2 3 25 25 H 1.09004 * 109.47188 * 30.23857 * 1 2 3 26 26 H 1.09002 * 109.47461 * 150.24313 * 1 2 3 27 27 H 1.07997 * 127.34386 * 359.93737 * 3 2 1 28 28 H 1.09003 * 109.47182 * 330.01888 * 8 7 5 29 29 H 1.09002 * 109.46740 * 210.02319 * 8 7 5 30 30 H 0.97000 * 119.99413 * 359.97438 * 11 9 8 31 31 H 1.08998 * 113.27803 * 21.92842 * 12 11 9 32 32 H 1.08996 * 113.46596 * 332.93466 * 13 12 11 33 33 H 1.09006 * 113.46151 * 202.49657 * 13 12 11 34 34 H 0.97003 * 120.00226 * 179.97438 * 18 17 15 35 35 H 1.09005 * 113.46771 * 87.43754 * 23 14 13 36 36 H 1.09002 * 113.46911 * 217.87594 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1285 0.0000 4 16 3.9034 0.6302 -0.0059 5 6 3.5606 -1.0574 -0.0009 6 8 4.3673 -1.9704 -0.0018 7 7 2.2221 -1.1605 0.0043 8 6 1.5576 -2.4661 0.0091 9 6 1.3345 -2.9110 1.4315 10 8 1.6946 -2.2066 2.3508 11 7 0.7338 -4.0912 1.6821 12 6 0.5164 -4.5235 3.0649 13 6 -0.6485 -5.5074 3.2409 14 7 0.3001 -6.5982 2.9700 15 6 0.2248 -7.8657 2.4575 16 1 -0.7053 -8.2265 2.0437 17 6 1.3440 -8.6869 2.4695 18 7 2.4398 -8.2968 3.0853 19 14 1.2945 -10.3457 1.6119 20 1 0.9466 -11.4017 2.5963 21 1 0.2721 -10.3161 0.5355 22 1 2.6258 -10.6378 1.0223 23 6 1.3640 -5.7309 3.4981 24 1 -0.3633 0.0044 1.0277 25 1 -0.3634 0.8879 -0.5175 26 1 -0.3634 -0.8921 -0.5100 27 1 1.8154 2.1367 -0.0009 28 1 2.1842 -3.1946 -0.5055 29 1 0.5979 -2.3871 -0.5017 30 1 0.4448 -4.6540 0.9468 31 1 0.5177 -3.6999 3.7789 32 1 -1.4216 -5.4054 2.4794 33 1 -1.0526 -5.5250 4.2531 34 1 3.2218 -8.8707 3.0941 35 1 1.4904 -5.8074 4.5781 36 1 2.3053 -5.8194 2.9557 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031375150.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:24 Heat of formation + Delta-G solvation = 32.595409 kcal Electronic energy + Delta-G solvation = -21724.099941 eV Core-core repulsion = 18337.969327 eV Total energy + Delta-G solvation = -3386.130615 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.093 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.27591 -39.38609 -37.76157 -37.45135 -33.45333 -32.65245 -31.93018 -30.32378 -27.81388 -26.70990 -24.69219 -24.02112 -23.15003 -21.31584 -20.12939 -19.41667 -18.18084 -17.59283 -17.17402 -16.78699 -15.80928 -15.50681 -15.09071 -14.97858 -14.72867 -14.34268 -13.90574 -13.87994 -13.79157 -13.58985 -12.99188 -12.80996 -12.66134 -12.23375 -11.71623 -11.59258 -11.39174 -11.26752 -10.90717 -10.67092 -10.31051 -10.22383 -10.11976 -9.96773 -9.48294 -9.44103 -8.87832 -8.49945 -8.02580 -6.98758 -5.84713 -3.18001 0.87673 1.30425 1.68826 2.06707 2.58684 2.69456 3.34111 3.38695 3.42171 3.42429 4.27610 4.39038 4.53478 4.78278 4.83829 4.94710 5.12212 5.20368 5.22646 5.33829 5.39462 5.45220 5.47491 5.94037 6.04894 6.13084 6.28584 6.43189 6.58557 6.69663 7.12998 7.19193 7.26330 7.47585 7.79175 7.89556 8.39390 8.95130 9.62553 10.55071 11.33108 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.024338 B = 0.003637 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.208705 B = 7695.942960 C = 8197.410378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.114 3.886 3 C -0.244 4.244 4 S -0.001 6.001 5 C 0.487 3.513 6 O -0.466 6.466 7 N -0.515 5.515 8 C 0.079 3.921 9 C 0.499 3.501 10 O -0.536 6.536 11 N -0.683 5.683 12 C 0.083 3.917 13 C 0.109 3.891 14 N -0.608 5.608 15 C -0.228 4.228 16 H 0.082 0.918 17 C -0.003 4.003 18 N -0.915 5.915 19 Si 0.912 3.088 20 H -0.288 1.288 21 H -0.279 1.279 22 H -0.289 1.289 23 C 0.148 3.852 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.191 0.809 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.406 0.594 31 H 0.097 0.903 32 H 0.044 0.956 33 H 0.046 0.954 34 H 0.255 0.745 35 H 0.039 0.961 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.067 19.323 -8.819 22.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.003 3.997 3 C -0.382 4.382 4 S 0.241 5.759 5 C 0.169 3.831 6 O -0.344 6.344 7 N -0.236 5.236 8 C -0.051 4.051 9 C 0.282 3.718 10 O -0.413 6.413 11 N -0.333 5.333 12 C -0.023 4.023 13 C -0.018 4.018 14 N -0.334 5.334 15 C -0.355 4.355 16 H 0.100 0.900 17 C -0.201 4.201 18 N -0.560 5.560 19 Si 0.742 3.258 20 H -0.216 1.216 21 H -0.205 1.205 22 H -0.216 1.216 23 C 0.021 3.979 24 H 0.107 0.893 25 H 0.109 0.891 26 H 0.094 0.906 27 H 0.208 0.792 28 H 0.143 0.857 29 H 0.140 0.860 30 H 0.241 0.759 31 H 0.115 0.885 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.969 19.543 -8.261 21.585 hybrid contribution -1.256 -2.178 -0.455 2.555 sum -5.224 17.364 -8.716 20.119 Atomic orbital electron populations 1.20807 0.86750 1.04173 1.04346 1.19366 0.95745 0.84808 0.99749 1.24779 0.93184 1.01106 1.19118 1.85041 1.08563 1.01066 1.81201 1.21544 0.83566 0.95753 0.82214 1.91003 1.48505 1.42343 1.52541 1.45594 1.06311 1.06647 1.65028 1.21754 1.01223 0.85144 0.96935 1.20539 0.78399 0.82064 0.90781 1.90719 1.50234 1.54590 1.45778 1.45354 1.59330 1.19319 1.09324 1.22689 1.00364 0.96778 0.82454 1.22758 0.93109 0.87480 0.98416 1.45859 1.03469 1.12829 1.71276 1.18922 0.97074 0.87773 1.31701 0.90045 1.24858 0.96492 0.98362 1.00405 1.69853 1.03052 1.37525 1.45591 0.86122 0.77027 0.83629 0.79047 1.21561 1.20479 1.21557 1.22491 0.94450 0.84041 0.96879 0.89297 0.89096 0.90634 0.79212 0.85664 0.85968 0.75897 0.88530 0.93798 0.93698 0.93467 0.94284 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.63 9.70 36.00 0.35 -0.28 16 2 C 0.11 1.12 6.59 -82.51 -0.54 0.58 16 3 C -0.24 -2.20 11.25 28.82 0.32 -1.88 16 4 S 0.00 -0.02 22.97 -107.50 -2.47 -2.49 16 5 C 0.49 7.61 8.27 53.82 0.45 8.06 16 6 O -0.47 -9.00 17.55 5.07 0.09 -8.91 16 7 N -0.52 -6.62 2.09 -118.57 -0.25 -6.87 16 8 C 0.08 0.93 5.75 -5.20 -0.03 0.90 16 9 C 0.50 7.87 7.90 -10.99 -0.09 7.78 16 10 O -0.54 -10.45 16.02 5.56 0.09 -10.36 16 11 N -0.68 -11.03 5.40 -53.49 -0.29 -11.32 16 12 C 0.08 1.55 4.61 -67.68 -0.31 1.24 16 13 C 0.11 2.08 8.44 -8.51 -0.07 2.01 16 14 N -0.61 -14.88 3.76 -184.62 -0.69 -15.57 16 15 C -0.23 -6.14 10.73 -15.06 -0.16 -6.30 16 16 H 0.08 2.10 7.84 -52.48 -0.41 1.69 16 17 C 0.00 -0.10 5.50 -17.43 -0.10 -0.19 16 18 N -0.91 -27.26 11.81 55.49 0.66 -26.61 16 19 Si 0.91 21.72 29.56 -169.99 -5.02 16.70 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 C 0.15 3.50 7.06 -8.37 -0.06 3.44 16 24 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.09 0.33 8.10 -51.93 -0.42 -0.09 16 26 H 0.07 0.39 6.18 -51.93 -0.32 0.07 16 27 H 0.19 1.05 8.06 -52.49 -0.42 0.63 16 28 H 0.13 1.50 7.80 -51.93 -0.41 1.09 16 29 H 0.12 0.89 6.12 -51.93 -0.32 0.58 16 30 H 0.41 5.99 8.76 -40.82 -0.36 5.64 16 31 H 0.10 1.75 7.45 -51.93 -0.39 1.37 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.06 1.74 7.57 -51.93 -0.39 1.35 16 LS Contribution 325.04 15.07 4.90 4.90 Total: -1.00 -35.89 325.04 -7.50 -43.39 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -4.26 Total: 1.77 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: -0.24 Total: 15.36 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: -0.58 Total: -60.36 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: 0.18 Total: -19.27 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.47 Total: -2.49 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.89 -7.50 -43.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031375150.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.986 kcal (2) G-P(sol) polarization free energy of solvation -35.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds