Wall clock time and date at job start Tue Mar 31 2020 03:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32563 * 121.64895 * 2 1 4 4 S 1.77235 * 105.31920 * 180.19909 * 3 2 1 5 5 C 1.72203 * 94.84864 * 359.76236 * 4 3 2 6 6 O 1.21830 * 127.05745 * 180.02562 * 5 4 3 7 7 N 1.34251 * 105.88632 * 0.02562 * 5 4 3 8 8 C 1.46493 * 121.38108 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47578 * 90.02369 * 8 7 5 10 10 O 1.21281 * 119.99681 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00304 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00168 * 180.02562 * 11 9 8 13 13 C 1.53495 * 114.20561 * 155.00314 * 12 11 9 14 14 N 1.47064 * 87.98647 * 87.71568 * 13 12 11 15 15 C 1.36929 * 136.05710 * 207.07951 * 14 13 12 16 16 H 1.08003 * 120.00152 * 6.50021 * 15 14 13 17 17 C 1.38818 * 120.00175 * 186.49548 * 15 14 13 18 18 N 1.31615 * 119.99847 * 6.43003 * 17 15 14 19 19 Si 1.86802 * 119.99925 * 186.42380 * 17 15 14 20 20 H 1.48502 * 109.46990 * 265.01960 * 19 17 15 21 21 H 1.48491 * 109.47236 * 25.02406 * 19 17 15 22 22 H 1.48506 * 109.46777 * 145.02360 * 19 17 15 23 23 C 1.47067 * 87.88549 * 27.33957 * 14 13 12 24 24 H 1.09000 * 109.46860 * 270.24513 * 1 2 3 25 25 H 1.09004 * 109.47188 * 30.23857 * 1 2 3 26 26 H 1.09002 * 109.47461 * 150.24313 * 1 2 3 27 27 H 1.07997 * 127.34386 * 359.93737 * 3 2 1 28 28 H 1.09003 * 109.47182 * 330.01888 * 8 7 5 29 29 H 1.09002 * 109.46740 * 210.02319 * 8 7 5 30 30 H 0.97000 * 119.99413 * 359.97438 * 11 9 8 31 31 H 1.08998 * 113.27803 * 21.92842 * 12 11 9 32 32 H 1.08996 * 113.46596 * 332.93466 * 13 12 11 33 33 H 1.09006 * 113.46151 * 202.49657 * 13 12 11 34 34 H 0.97003 * 120.00226 * 179.97438 * 18 17 15 35 35 H 1.09005 * 113.46771 * 87.43754 * 23 14 13 36 36 H 1.09002 * 113.46911 * 217.87594 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1285 0.0000 4 16 3.9034 0.6302 -0.0059 5 6 3.5606 -1.0574 -0.0009 6 8 4.3673 -1.9704 -0.0018 7 7 2.2221 -1.1605 0.0043 8 6 1.5576 -2.4661 0.0091 9 6 1.3345 -2.9110 1.4315 10 8 1.6946 -2.2066 2.3508 11 7 0.7338 -4.0912 1.6821 12 6 0.5164 -4.5235 3.0649 13 6 -0.6485 -5.5074 3.2409 14 7 0.3001 -6.5982 2.9700 15 6 0.2248 -7.8657 2.4575 16 1 -0.7053 -8.2265 2.0437 17 6 1.3440 -8.6869 2.4695 18 7 2.4398 -8.2968 3.0853 19 14 1.2945 -10.3457 1.6119 20 1 0.9466 -11.4017 2.5963 21 1 0.2721 -10.3161 0.5355 22 1 2.6258 -10.6378 1.0223 23 6 1.3640 -5.7309 3.4981 24 1 -0.3633 0.0044 1.0277 25 1 -0.3634 0.8879 -0.5175 26 1 -0.3634 -0.8921 -0.5100 27 1 1.8154 2.1367 -0.0009 28 1 2.1842 -3.1946 -0.5055 29 1 0.5979 -2.3871 -0.5017 30 1 0.4448 -4.6540 0.9468 31 1 0.5177 -3.6999 3.7789 32 1 -1.4216 -5.4054 2.4794 33 1 -1.0526 -5.5250 4.2531 34 1 3.2218 -8.8707 3.0941 35 1 1.4904 -5.8074 4.5781 36 1 2.3053 -5.8194 2.9557 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031375150.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:24 Heat of formation + Delta-G solvation = 5.584820 kcal Electronic energy + Delta-G solvation = -21725.271208 eV Core-core repulsion = 18337.969327 eV Total energy + Delta-G solvation = -3387.301882 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.093 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.29750 -40.82332 -39.25823 -38.62298 -35.04457 -33.96095 -33.35983 -31.21907 -29.57880 -27.67068 -26.43034 -25.35312 -24.62753 -22.51767 -21.22800 -21.05168 -19.07490 -18.86550 -18.67018 -18.22096 -17.10620 -16.94060 -16.67975 -16.23466 -16.01275 -15.65274 -15.33474 -15.05128 -14.68009 -14.59242 -14.44225 -14.31243 -13.68811 -13.37226 -13.24373 -12.91330 -12.80695 -12.55941 -12.44089 -12.14771 -12.09153 -11.82855 -11.38940 -11.31438 -11.26859 -10.93321 -10.51181 -10.00688 -8.99752 -8.94882 -7.94683 -5.28338 -0.14648 0.40681 0.86040 1.07300 1.42823 1.45234 1.46631 1.56225 1.65894 2.20437 2.45419 3.28104 3.42146 3.49374 3.65614 3.71392 3.82622 4.04153 4.26918 4.45314 4.51049 4.58198 4.69822 4.78433 4.79116 4.87494 4.96255 5.03769 5.17642 5.30581 5.44025 5.62358 5.69742 5.84968 6.19909 6.50247 6.84760 7.11570 7.57440 8.56077 9.23974 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.024338 B = 0.003637 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.208705 B = 7695.942960 C = 8197.410378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.095 3.905 3 C -0.225 4.225 4 S -0.002 6.002 5 C 0.461 3.539 6 O -0.527 6.527 7 N -0.516 5.516 8 C 0.082 3.918 9 C 0.500 3.500 10 O -0.575 6.575 11 N -0.680 5.680 12 C 0.112 3.888 13 C 0.120 3.880 14 N -0.632 5.632 15 C -0.225 4.225 16 H 0.097 0.903 17 C -0.070 4.070 18 N -0.958 5.958 19 Si 0.979 3.021 20 H -0.290 1.290 21 H -0.257 1.257 22 H -0.301 1.301 23 C 0.140 3.860 24 H 0.083 0.917 25 H 0.123 0.877 26 H 0.089 0.911 27 H 0.232 0.768 28 H 0.121 0.879 29 H 0.176 0.824 30 H 0.415 0.585 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.246 0.754 35 H 0.022 0.978 36 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.374 21.120 -10.413 25.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.013 4.013 3 C -0.361 4.361 4 S 0.241 5.759 5 C 0.144 3.856 6 O -0.410 6.410 7 N -0.236 5.236 8 C -0.046 4.046 9 C 0.286 3.714 10 O -0.454 6.454 11 N -0.330 5.330 12 C 0.004 3.996 13 C -0.005 4.005 14 N -0.358 5.358 15 C -0.353 4.353 16 H 0.114 0.886 17 C -0.262 4.262 18 N -0.607 5.607 19 Si 0.807 3.193 20 H -0.217 1.217 21 H -0.181 1.181 22 H -0.228 1.228 23 C 0.012 3.988 24 H 0.102 0.898 25 H 0.142 0.858 26 H 0.107 0.893 27 H 0.249 0.751 28 H 0.139 0.861 29 H 0.193 0.807 30 H 0.251 0.749 31 H 0.124 0.876 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.039 0.961 36 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -7.373 21.398 -9.885 24.697 hybrid contribution -0.278 -2.575 0.079 2.591 sum -7.651 18.823 -9.806 22.561 Atomic orbital electron populations 1.20963 0.83549 1.06525 1.04644 1.20072 0.97614 0.83775 0.99884 1.25420 0.90417 1.02774 1.17527 1.85013 1.11729 0.98739 1.80392 1.22084 0.84355 0.96587 0.82526 1.90954 1.50200 1.44478 1.55409 1.45729 1.05735 1.07984 1.64142 1.21882 1.03603 0.84911 0.94207 1.21205 0.76857 0.81234 0.92127 1.90700 1.51547 1.55703 1.47485 1.45301 1.59490 1.19690 1.08520 1.22293 0.97980 0.95295 0.83988 1.22855 0.93053 0.84639 0.99998 1.46124 1.05525 1.12925 1.71261 1.19416 0.97188 0.88480 1.30225 0.88585 1.25722 0.96379 1.02212 1.01936 1.70069 1.03709 1.38767 1.48133 0.85051 0.76731 0.79184 0.78294 1.21681 1.18133 1.22845 1.22476 0.93490 0.87362 0.95424 0.89809 0.85833 0.89271 0.75107 0.86121 0.80658 0.74873 0.87609 0.90679 0.92231 0.94554 0.96066 0.96080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 9.70 71.23 0.69 -0.07 16 2 C 0.10 1.58 6.59 40.71 0.27 1.85 16 3 C -0.22 -3.31 11.25 66.67 0.75 -2.56 16 4 S 0.00 -0.04 22.97 -56.49 -1.30 -1.34 16 5 C 0.46 14.65 8.27 129.87 1.07 15.72 16 6 O -0.53 -21.60 17.55 -4.77 -0.08 -21.68 16 7 N -0.52 -12.59 2.09 -647.50 -1.35 -13.94 16 8 C 0.08 1.80 5.75 85.63 0.49 2.30 16 9 C 0.50 15.26 7.90 87.66 0.69 15.95 16 10 O -0.57 -22.21 16.02 -3.03 -0.05 -22.26 16 11 N -0.68 -21.04 5.40 -441.53 -2.39 -23.42 16 12 C 0.11 4.05 4.61 45.55 0.21 4.26 16 13 C 0.12 4.28 8.44 83.18 0.70 4.99 16 14 N -0.63 -30.68 3.76 -738.02 -2.78 -33.46 16 15 C -0.23 -12.02 10.73 84.04 0.90 -11.12 16 16 H 0.10 4.74 7.84 -2.91 -0.02 4.71 16 17 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 18 N -0.96 -59.37 11.81 21.65 0.26 -59.11 16 19 Si 0.98 45.10 29.56 68.60 2.03 47.13 16 20 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 21 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 22 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 23 C 0.14 6.82 7.06 83.27 0.59 7.41 16 24 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.12 0.19 8.10 -2.38 -0.02 0.17 16 26 H 0.09 0.46 6.18 -2.39 -0.01 0.44 16 27 H 0.23 1.36 8.06 -2.91 -0.02 1.33 16 28 H 0.12 2.84 7.80 -2.39 -0.02 2.82 16 29 H 0.18 1.85 6.12 -2.39 -0.01 1.84 16 30 H 0.41 11.45 8.76 -92.71 -0.81 10.63 16 31 H 0.11 3.72 7.45 -2.39 -0.02 3.70 16 32 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 34 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 35 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.02 1.18 7.57 -2.39 -0.02 1.17 16 Total: -1.00 -83.40 325.04 1.48 -81.92 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.31 Total: 10.90 kcal Atomic # 6 Polarization: 28.43 SS G_CDS: 6.84 Total: 35.27 kcal Atomic # 7 Polarization: -123.68 SS G_CDS: -6.26 Total: -129.94 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -0.13 Total: -43.94 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -1.30 Total: -1.34 kcal Total: -83.40 1.48 -81.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031375150.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.503 kcal (2) G-P(sol) polarization free energy of solvation -83.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds