Wall clock time and date at job start Tue Mar 31 2020 03:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00104 * 2 1 4 4 H 1.48501 * 109.47365 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47283 * 300.00293 * 3 2 1 6 6 H 1.48505 * 109.46794 * 60.00062 * 3 2 1 7 7 C 1.38813 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99546 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00214 * 0.02562 * 7 2 1 10 10 C 1.47019 * 125.64805 * 359.97147 * 9 7 2 11 11 C 1.54329 * 107.27370 * 178.99595 * 10 9 7 12 12 H 1.09001 * 110.71722 * 96.16582 * 11 10 9 13 13 O 1.42892 * 110.87660 * 219.37444 * 11 10 9 14 14 C 1.55160 * 102.94035 * 337.81075 * 11 10 9 15 15 H 1.09006 * 111.00327 * 277.38778 * 14 11 10 16 16 N 1.46497 * 111.00195 * 153.57376 * 14 11 10 17 17 C 1.34780 * 119.99566 * 158.18145 * 16 14 11 18 18 O 1.21280 * 120.00423 * 359.97438 * 17 16 14 19 19 C 1.50701 * 119.99795 * 180.02562 * 17 16 14 20 20 C 1.50703 * 109.47064 * 179.97438 * 19 17 16 21 21 C 1.33637 * 122.75144 * 124.73159 * 20 19 17 22 22 S 1.76196 * 107.92600 * 179.97438 * 21 20 19 23 23 C 1.70981 * 90.28145 * 0.27490 * 22 21 20 24 24 N 1.29018 * 110.16692 * 359.84078 * 23 22 21 25 25 C 1.47465 * 125.62996 * 179.97438 * 9 7 2 26 26 H 0.96994 * 120.00209 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.88346 * 59.58253 * 10 9 7 28 28 H 1.09003 * 110.01411 * 298.48656 * 10 9 7 29 29 H 0.96704 * 113.99795 * 293.61554 * 13 11 10 30 30 H 0.96995 * 120.00423 * 338.17451 * 16 14 11 31 31 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 32 32 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 33 33 H 1.08005 * 126.03332 * 0.04010 * 21 20 19 34 34 H 1.08000 * 124.91684 * 179.83908 * 23 22 21 35 35 H 1.09004 * 110.34904 * 85.23178 * 25 9 7 36 36 H 1.09003 * 110.40305 * 322.89366 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1375 -2.5327 0.0006 11 6 -0.4485 -4.0442 -0.0252 12 1 -0.6317 -4.4174 0.9823 13 8 -1.5635 -4.3201 -0.8752 14 6 0.8520 -4.6566 -0.6094 15 1 0.8567 -4.5980 -1.6979 16 7 1.0290 -6.0396 -0.1599 17 6 1.8116 -6.8817 -0.8634 18 8 2.3688 -6.4948 -1.8687 19 6 1.9934 -8.3046 -0.4013 20 6 2.9071 -9.0298 -1.3555 21 6 4.0203 -9.6530 -0.9576 22 16 4.7820 -10.3628 -2.3791 23 6 3.5321 -9.7440 -3.3682 24 7 2.6773 -9.0958 -2.6514 25 6 1.9341 -3.7313 0.0005 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5575 -2.0528 -0.8833 28 1 -0.5568 -2.0834 0.9008 29 1 -2.4012 -3.9587 -0.5548 30 1 0.5832 -6.3491 0.6439 31 1 2.4318 -8.3094 0.5966 32 1 1.0252 -8.8047 -0.3752 33 1 4.3875 -9.7122 0.0564 34 1 3.4676 -9.8764 -4.4381 35 1 2.1679 -4.0415 1.0190 36 1 2.8331 -3.7413 -0.6158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077787174.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:05 Heat of formation + Delta-G solvation = -2.843481 kcal Electronic energy + Delta-G solvation = -21430.983822 eV Core-core repulsion = 18043.316462 eV Total energy + Delta-G solvation = -3387.667360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.093 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.32351 -39.14994 -37.67160 -35.04755 -33.95621 -32.40631 -31.56400 -28.94297 -27.98235 -26.80051 -25.06137 -24.25901 -21.11935 -20.47999 -20.10418 -19.59619 -18.26677 -17.17691 -16.99653 -16.45276 -16.00716 -15.62797 -14.91541 -14.65657 -14.42206 -14.04657 -13.81218 -13.42223 -13.25268 -13.01521 -12.70355 -12.65085 -12.22487 -12.01073 -11.58213 -11.41468 -11.23831 -10.87073 -10.82040 -10.12639 -9.88211 -9.83337 -9.78821 -9.70476 -9.54634 -9.29652 -8.96863 -8.77410 -8.60374 -6.90232 -5.75508 -3.09895 0.58483 1.25523 1.57031 2.65117 2.89927 3.38962 3.43660 3.46411 3.48944 4.04312 4.45049 4.64889 4.72098 4.91489 5.05112 5.09250 5.24221 5.24940 5.45249 5.50596 5.60280 5.69285 5.84046 5.94251 6.12020 6.16713 6.56341 6.64835 6.93511 7.33761 7.48131 7.64519 7.72258 7.78434 8.13783 8.18438 8.50859 9.16115 9.76122 10.39357 11.36343 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.024798 B = 0.003196 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.839841 B = 8759.152029 C = 9478.279926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.915 3.085 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.228 4.228 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.154 3.846 11 C 0.069 3.931 12 H 0.057 0.943 13 O -0.563 6.563 14 C 0.141 3.859 15 H 0.102 0.898 16 N -0.718 5.718 17 C 0.516 3.484 18 O -0.520 6.520 19 C -0.068 4.068 20 C 0.087 3.913 21 C -0.253 4.253 22 S 0.103 5.897 23 C 0.027 3.973 24 N -0.442 5.442 25 C 0.131 3.869 26 H 0.252 0.748 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.376 0.624 30 H 0.396 0.604 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.178 0.822 34 H 0.198 0.802 35 H 0.023 0.977 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.369 -21.863 1.154 22.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.745 3.255 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.356 4.356 8 H 0.099 0.901 9 N -0.328 5.328 10 C 0.028 3.972 11 C 0.009 3.991 12 H 0.075 0.925 13 O -0.368 6.368 14 C 0.035 3.965 15 H 0.120 0.880 16 N -0.369 5.369 17 C 0.300 3.700 18 O -0.394 6.394 19 C -0.110 4.110 20 C -0.046 4.046 21 C -0.392 4.392 22 S 0.355 5.645 23 C -0.272 4.272 24 N -0.154 5.154 25 C 0.003 3.997 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.223 0.777 30 H 0.230 0.770 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.195 0.805 34 H 0.215 0.785 35 H 0.041 0.959 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.636 -22.004 -0.436 22.491 hybrid contribution -0.772 1.529 1.312 2.157 sum 3.865 -20.475 0.876 20.855 Atomic orbital electron populations 1.69934 1.04924 1.25073 1.57215 1.24819 0.95789 0.97780 1.02050 0.85992 0.78761 0.83469 0.77237 1.20424 1.21650 1.21725 1.19144 0.90586 0.82095 1.43740 0.90112 1.44262 1.01218 0.99928 1.87402 1.21810 0.85394 0.87857 1.02146 1.23450 0.85582 0.98502 0.91605 0.92524 1.86479 1.18691 1.79804 1.51780 1.22210 0.94291 0.79092 1.00886 0.87954 1.45881 1.49998 1.11864 1.29196 1.20191 0.79203 0.86680 0.83913 1.90750 1.46752 1.77367 1.24572 1.20250 1.00275 0.92837 0.97686 1.19662 0.95363 0.99323 0.90212 1.26783 1.00395 1.08359 1.03685 1.83946 1.29208 1.51732 0.99620 1.28411 0.94006 0.99871 1.04901 1.66030 1.29438 1.15103 1.04859 1.21850 0.94938 0.85715 0.97196 0.93717 0.92157 0.93321 0.77735 0.77031 0.87264 0.87212 0.80482 0.78489 0.95922 0.93261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.99 10.31 55.49 0.57 -26.42 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.23 -6.45 10.28 -15.06 -0.15 -6.60 16 8 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 9 N -0.60 -15.60 3.40 -170.05 -0.58 -16.18 16 10 C 0.15 3.68 5.15 -3.06 -0.02 3.67 16 11 C 0.07 1.28 3.96 -24.89 -0.10 1.18 16 12 H 0.06 0.91 8.00 -51.93 -0.42 0.50 16 13 O -0.56 -9.92 13.40 -35.23 -0.47 -10.39 16 14 C 0.14 2.71 3.09 -65.79 -0.20 2.51 16 15 H 0.10 2.32 7.63 -51.93 -0.40 1.93 16 16 N -0.72 -10.66 5.21 -51.74 -0.27 -10.93 16 17 C 0.52 8.04 7.80 -10.98 -0.09 7.95 16 18 O -0.52 -10.67 15.13 5.56 0.08 -10.58 16 19 C -0.07 -0.72 6.19 -29.03 -0.18 -0.90 16 20 C 0.09 1.08 5.64 -84.22 -0.47 0.60 16 21 C -0.25 -2.48 11.07 29.12 0.32 -2.16 16 22 S 0.10 0.90 23.22 -107.50 -2.50 -1.60 16 23 C 0.03 0.29 12.23 51.58 0.63 0.92 16 24 N -0.44 -6.25 9.68 -11.90 -0.12 -6.37 16 25 C 0.13 2.84 6.93 -2.52 -0.02 2.82 16 26 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.06 1.64 7.30 -51.93 -0.38 1.26 16 28 H 0.05 1.25 7.50 -51.93 -0.39 0.86 16 29 H 0.38 5.00 9.12 45.56 0.42 5.42 16 30 H 0.40 4.43 8.54 -40.82 -0.35 4.08 16 31 H 0.11 0.79 8.03 -51.93 -0.42 0.37 16 32 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.18 1.22 8.06 -52.48 -0.42 0.79 16 34 H 0.20 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 321.85 15.07 4.85 4.85 Total: -1.00 -36.66 321.85 -7.41 -44.07 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -3.59 Total: 6.61 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -0.37 Total: 9.67 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: -0.39 Total: -59.89 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.39 Total: -20.97 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.50 Total: -1.60 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -36.66 -7.41 -44.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077787174.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.231 kcal (2) G-P(sol) polarization free energy of solvation -36.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds