Wall clock time and date at job start Tue Mar 31 2020 03:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00010 * 2 1 4 4 H 1.48499 * 109.47132 * 180.02562 * 3 2 1 5 5 H 1.48490 * 109.46916 * 300.00005 * 3 2 1 6 6 H 1.48504 * 109.46942 * 60.00249 * 3 2 1 7 7 C 1.38819 * 120.00350 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99933 * 162.75254 * 7 2 1 9 9 N 1.36938 * 119.99690 * 343.03307 * 7 2 1 10 10 C 1.46930 * 120.63004 * 332.05473 * 9 7 2 11 11 C 1.53188 * 108.77087 * 233.58886 * 10 9 7 12 12 C 1.53042 * 109.31515 * 305.36098 * 11 10 9 13 13 H 1.09002 * 109.46108 * 301.35316 * 12 11 10 14 14 N 1.46496 * 109.46379 * 181.38870 * 12 11 10 15 15 C 1.34776 * 120.00107 * 85.00072 * 14 12 11 16 16 O 1.21624 * 119.99761 * 359.97438 * 15 14 12 17 17 C 1.47253 * 120.00440 * 180.02562 * 15 14 12 18 18 N 1.30551 * 125.54522 * 179.97438 * 17 15 14 19 19 C 1.30706 * 115.90683 * 180.02562 * 18 17 15 20 20 C 1.34232 * 115.78733 * 0.02562 * 19 18 17 21 21 S 1.71079 * 109.08678 * 359.72734 * 20 19 18 22 22 C 1.53040 * 109.53352 * 61.36900 * 12 11 10 23 23 H 1.08998 * 109.49978 * 58.59064 * 22 12 11 24 24 O 1.42909 * 109.49735 * 178.68731 * 22 12 11 25 25 C 1.46921 * 120.62899 * 151.77417 * 9 7 2 26 26 H 0.96993 * 120.00034 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.58296 * 353.37296 * 10 9 7 28 28 H 1.08994 * 109.58582 * 113.80022 * 10 9 7 29 29 H 1.08999 * 109.50029 * 65.31506 * 11 10 9 30 30 H 1.09007 * 109.49740 * 185.37964 * 11 10 9 31 31 H 0.96996 * 120.00004 * 265.00261 * 14 12 11 32 32 H 1.08006 * 122.10515 * 179.97438 * 19 18 17 33 33 H 1.07997 * 125.45637 * 179.97438 * 20 19 18 34 34 H 0.96693 * 114.00225 * 180.02562 * 24 22 12 35 35 H 1.09005 * 109.58489 * 246.19921 * 25 9 7 36 36 H 1.09002 * 109.59012 * 6.62771 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3965 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0538 -1.2232 -0.2768 9 7 1.3704 -2.3621 0.3471 10 6 0.2240 -2.3389 1.2660 11 6 0.4936 -3.3152 2.4152 12 6 0.8108 -4.6979 1.8409 13 1 -0.0276 -5.0402 1.2342 14 7 1.0366 -5.6421 2.9380 15 6 -0.0090 -6.2649 3.5171 16 8 -1.1401 -6.0426 3.1291 17 6 0.2178 -7.2135 4.6202 18 7 -0.7115 -7.8738 5.2566 19 6 -0.2975 -8.6683 6.2083 20 6 1.0298 -8.7001 6.4064 21 16 1.7872 -7.6463 5.2917 22 6 2.0682 -4.6151 0.9725 23 1 2.9014 -4.2493 1.5727 24 8 2.3812 -5.9125 0.4614 25 6 1.8131 -3.6528 -0.1975 26 1 -0.4850 0.8400 -0.0004 27 1 0.0953 -1.3324 1.6641 28 1 -0.6774 -2.6414 0.7332 29 1 1.3415 -2.9616 3.0017 30 1 -0.3883 -3.3792 3.0527 31 1 1.9386 -5.8190 3.2477 32 1 -0.9804 -9.2611 6.7988 33 1 1.5384 -9.2985 7.1478 34 1 3.1690 -5.9350 -0.0987 35 1 1.0385 -4.0603 -0.8472 36 1 2.7332 -3.5137 -0.7652 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090668985.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:01 Heat of formation + Delta-G solvation = -9.413608 kcal Electronic energy + Delta-G solvation = -21777.611891 eV Core-core repulsion = 18389.659629 eV Total energy + Delta-G solvation = -3387.952262 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.093 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.30519 -39.33460 -37.82763 -35.44754 -34.44816 -32.10651 -30.91552 -29.95739 -28.63643 -26.63928 -24.99441 -22.78696 -22.26347 -21.22650 -20.13831 -19.48102 -18.83271 -17.24661 -16.86086 -16.50687 -15.99307 -15.47747 -15.32546 -14.84902 -14.28113 -13.95043 -13.93872 -13.78782 -13.55592 -13.22900 -12.80878 -12.33720 -12.12708 -11.87060 -11.61477 -11.14489 -10.91586 -10.75898 -10.45331 -10.37845 -10.28886 -9.97670 -9.97276 -9.82896 -9.77582 -9.51020 -9.23625 -8.87954 -8.50130 -6.80363 -5.87308 -3.32013 0.02234 0.91911 1.34226 2.22736 2.86179 3.20629 3.32833 3.40628 3.42516 4.26106 4.36775 4.49205 4.77157 4.78780 5.05117 5.22936 5.29805 5.43315 5.48533 5.69550 5.71764 5.91283 6.03988 6.18065 6.43364 6.44931 6.62083 6.71498 6.74351 7.23039 7.26382 7.55295 7.59232 7.71054 7.87290 8.16452 8.34990 9.10450 9.72687 10.28349 11.21164 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.028333 B = 0.003557 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.020025 B = 7870.564831 C = 8082.746915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.006 3.994 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.261 4.261 8 H 0.068 0.932 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.148 4.148 12 C 0.164 3.836 13 H 0.093 0.907 14 N -0.704 5.704 15 C 0.590 3.410 16 O -0.498 6.498 17 C 0.008 3.992 18 N -0.404 5.404 19 C 0.028 3.972 20 C -0.269 4.269 21 S 0.178 5.822 22 C 0.079 3.921 23 H 0.059 0.941 24 O -0.571 6.571 25 C 0.121 3.879 26 H 0.256 0.744 27 H 0.095 0.905 28 H 0.026 0.974 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.395 0.605 32 H 0.180 0.820 33 H 0.184 0.816 34 H 0.375 0.625 35 H 0.031 0.969 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.941 -15.668 11.068 20.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.390 4.390 8 H 0.086 0.914 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.189 4.189 12 C 0.061 3.939 13 H 0.111 0.889 14 N -0.355 5.355 15 C 0.371 3.629 16 O -0.372 6.372 17 C -0.269 4.269 18 N -0.120 5.120 19 C -0.128 4.128 20 C -0.410 4.410 21 S 0.431 5.569 22 C 0.018 3.982 23 H 0.077 0.923 24 O -0.376 6.376 25 C -0.007 4.007 26 H 0.066 0.934 27 H 0.113 0.887 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.229 0.771 32 H 0.197 0.803 33 H 0.201 0.799 34 H 0.222 0.778 35 H 0.049 0.951 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.940 -15.122 10.701 19.454 hybrid contribution 0.767 0.218 0.588 0.991 sum 6.707 -14.904 11.290 19.864 Atomic orbital electron populations 1.70035 1.05304 1.25706 1.53102 1.25091 0.95301 0.98575 1.00413 0.86207 0.79299 0.83762 0.77366 1.20212 1.21645 1.21439 1.19201 0.92656 0.84555 1.42584 0.91427 1.44084 1.35773 1.01230 1.50127 1.20844 0.88719 0.98330 0.87616 1.22648 1.01281 0.94003 1.00955 1.21153 0.98104 0.88892 0.85749 0.88865 1.45924 1.08312 1.44514 1.36790 1.16693 0.85690 0.79718 0.80837 1.90874 1.22101 1.62438 1.61739 1.27773 0.91018 1.04560 1.03533 1.66652 1.34231 1.05406 1.05674 1.21893 0.93682 0.99911 0.97344 1.26762 0.99118 1.07719 1.07371 1.83904 1.12115 1.34978 1.25875 1.22888 0.95750 0.83301 0.96232 0.92345 1.86479 1.50573 1.30330 1.70209 1.21615 0.98943 0.87363 0.92743 0.93431 0.88707 0.95631 0.92093 0.91682 0.77135 0.80325 0.79860 0.77834 0.95134 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.47 11.18 55.49 0.62 -24.85 16 2 C 0.01 0.15 4.92 -17.43 -0.09 0.06 16 3 Si 0.90 20.96 29.59 -169.99 -5.03 15.93 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.26 -6.82 9.58 -15.06 -0.14 -6.96 16 8 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 9 N -0.59 -14.04 2.99 -172.05 -0.51 -14.55 16 10 C 0.17 4.01 5.30 -3.71 -0.02 3.99 16 11 C -0.15 -2.85 5.65 -26.61 -0.15 -3.00 16 12 C 0.16 2.89 2.12 -67.89 -0.14 2.75 16 13 H 0.09 1.88 7.57 -51.93 -0.39 1.49 16 14 N -0.70 -10.60 4.91 -54.90 -0.27 -10.87 16 15 C 0.59 9.91 7.77 -12.60 -0.10 9.81 16 16 O -0.50 -10.41 16.73 5.26 0.09 -10.32 16 17 C 0.01 0.11 7.46 -14.43 -0.11 0.00 16 18 N -0.40 -5.84 10.59 -11.50 -0.12 -5.96 16 19 C 0.03 0.29 11.24 -19.44 -0.22 0.07 16 20 C -0.27 -2.14 11.09 29.32 0.33 -1.82 16 21 S 0.18 1.63 22.31 -107.50 -2.40 -0.77 16 22 C 0.08 1.29 3.16 -26.39 -0.08 1.21 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 24 O -0.57 -8.10 13.16 -35.23 -0.46 -8.57 16 25 C 0.12 2.38 6.17 -3.49 -0.02 2.35 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.09 2.47 6.04 -51.93 -0.31 2.16 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.39 4.84 7.75 -40.82 -0.32 4.53 16 32 H 0.18 1.28 8.06 -52.48 -0.42 0.85 16 33 H 0.18 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.38 3.70 9.09 45.56 0.41 4.12 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 1.14 7.93 -51.93 -0.41 0.72 16 LS Contribution 318.66 15.07 4.80 4.80 Total: -1.00 -32.99 318.66 -7.56 -40.56 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -3.53 Total: 6.14 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -0.75 Total: 8.47 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: -0.29 Total: -56.24 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.38 Total: -18.89 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.40 Total: -0.77 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.99 -7.56 -40.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090668985.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.143 kcal (2) G-P(sol) polarization free energy of solvation -32.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds