Wall clock time and date at job start Tue Mar 31 2020 03:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00202 * 2 1 4 4 H 1.48495 * 109.47205 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46696 * 299.99485 * 3 2 1 6 6 H 1.48500 * 109.47209 * 59.99275 * 3 2 1 7 7 C 1.38814 * 119.99592 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99397 * 163.07305 * 7 2 1 9 9 N 1.36936 * 120.00573 * 343.07460 * 7 2 1 10 10 C 1.46926 * 120.62932 * 151.82216 * 9 7 2 11 11 C 1.53193 * 108.76163 * 126.40653 * 10 9 7 12 12 C 1.53050 * 109.31153 * 54.65528 * 11 10 9 13 13 H 1.09003 * 109.45845 * 58.62663 * 12 11 10 14 14 N 1.46499 * 109.45892 * 178.60079 * 12 11 10 15 15 C 1.34778 * 119.99877 * 275.02795 * 14 12 11 16 16 O 1.21619 * 120.00123 * 359.97438 * 15 14 12 17 17 C 1.47259 * 120.00017 * 180.02562 * 15 14 12 18 18 N 1.30559 * 125.54127 * 0.03935 * 17 15 14 19 19 C 1.30703 * 115.90693 * 179.97438 * 18 17 15 20 20 C 1.34226 * 115.78417 * 359.97438 * 19 18 17 21 21 S 1.71078 * 109.09212 * 0.02562 * 20 19 18 22 22 C 1.53036 * 109.52530 * 298.61539 * 12 11 10 23 23 H 1.09005 * 109.49875 * 301.38722 * 22 12 11 24 24 O 1.42903 * 109.49759 * 181.32206 * 22 12 11 25 25 C 1.46926 * 120.62907 * 331.85052 * 9 7 2 26 26 H 0.96995 * 120.00063 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.58845 * 246.19901 * 10 9 7 28 28 H 1.08993 * 109.59076 * 6.48989 * 10 9 7 29 29 H 1.08997 * 109.51063 * 294.70288 * 11 10 9 30 30 H 1.08998 * 109.49149 * 174.59703 * 11 10 9 31 31 H 0.96999 * 120.00230 * 95.03023 * 14 12 11 32 32 H 1.08005 * 122.10691 * 180.02562 * 19 18 17 33 33 H 1.08002 * 125.45702 * 179.97438 * 20 19 18 34 34 H 0.96702 * 114.00197 * 179.97438 * 24 22 12 35 35 H 1.08996 * 109.58983 * 113.79504 * 25 9 7 36 36 H 1.09002 * 109.70045 * 353.43609 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2226 -0.2718 9 7 1.3700 -2.3623 0.3463 10 6 1.8138 -3.6529 -0.1978 11 6 2.0675 -4.6170 0.9654 12 6 0.8118 -4.7006 1.8365 13 1 -0.0283 -5.0408 1.2309 14 7 1.0394 -5.6473 2.9311 15 6 0.8355 -6.9652 2.7357 16 8 0.4621 -7.3684 1.6507 17 6 1.0637 -7.9167 3.8361 18 7 1.4613 -7.6039 5.0397 19 6 1.6029 -8.6019 5.8718 20 6 1.3200 -9.8178 5.3786 21 16 0.8437 -9.6614 3.7429 22 6 0.4973 -3.3189 2.4144 23 1 1.3468 -2.9675 3.0002 24 8 -0.6572 -3.4039 3.2523 25 6 0.2259 -2.3399 1.2679 26 1 -0.4850 0.8400 -0.0004 27 1 1.0402 -4.0606 -0.8484 28 1 2.7331 -3.5132 -0.7663 29 1 2.9021 -4.2530 1.5644 30 1 2.3045 -5.6059 0.5731 31 1 1.3368 -5.3257 3.7966 32 1 1.9262 -8.4572 6.8921 33 1 1.3837 -10.7464 5.9264 34 1 -0.9147 -2.5627 3.6537 35 1 -0.6771 -2.6405 0.7368 36 1 0.0967 -1.3346 1.6688 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090668987.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:02 Heat of formation + Delta-G solvation = -37.961951 kcal Electronic energy + Delta-G solvation = -21794.536143 eV Core-core repulsion = 18405.345932 eV Total energy + Delta-G solvation = -3389.190211 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.093 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.40070 -40.37685 -39.30419 -36.90579 -35.90052 -34.01980 -32.02391 -30.91121 -30.45229 -27.74180 -26.62388 -24.29644 -23.63248 -22.75591 -21.33845 -20.79049 -19.60408 -18.81689 -18.13733 -17.97800 -17.37833 -16.69952 -16.48297 -16.20651 -15.61636 -15.46181 -15.21321 -14.95718 -14.83762 -14.50324 -14.24355 -13.87370 -13.56155 -13.36882 -13.06469 -12.69012 -12.54388 -12.46971 -12.11753 -12.00104 -11.89345 -11.67858 -11.33516 -11.00075 -10.88200 -10.72241 -10.61388 -10.23818 -9.89612 -8.76249 -7.90666 -5.38122 -0.80967 0.10131 0.72812 1.31054 1.47953 1.50717 1.61134 2.05694 2.13334 2.49906 3.02222 3.12650 3.28481 3.61947 3.85223 4.00251 4.03343 4.29109 4.30222 4.39653 4.40048 4.43699 4.65896 4.84701 4.90509 5.03830 5.08376 5.15092 5.31628 5.33891 5.55801 5.64493 6.25059 6.33856 6.54644 6.80588 6.98788 7.10101 7.77326 8.30542 9.16283 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.035917 B = 0.003364 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.391671 B = 8320.874350 C = 8503.206291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.047 4.047 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.266 4.266 8 H 0.073 0.927 9 N -0.605 5.605 10 C 0.143 3.857 11 C -0.124 4.124 12 C 0.168 3.832 13 H 0.065 0.935 14 N -0.681 5.681 15 C 0.593 3.407 16 O -0.566 6.566 17 C -0.059 4.059 18 N -0.436 5.436 19 C 0.009 3.991 20 C -0.252 4.252 21 S 0.266 5.734 22 C 0.092 3.908 23 H 0.064 0.936 24 O -0.574 6.574 25 C 0.159 3.841 26 H 0.252 0.748 27 H 0.013 0.987 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.415 0.585 32 H 0.207 0.793 33 H 0.225 0.775 34 H 0.393 0.607 35 H -0.002 1.002 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.791 -18.316 13.608 23.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.243 4.243 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.395 4.395 8 H 0.091 0.909 9 N -0.329 5.329 10 C 0.017 3.983 11 C -0.164 4.164 12 C 0.064 3.936 13 H 0.083 0.917 14 N -0.330 5.330 15 C 0.376 3.624 16 O -0.446 6.446 17 C -0.332 4.332 18 N -0.156 5.156 19 C -0.147 4.147 20 C -0.392 4.392 21 S 0.519 5.481 22 C 0.031 3.969 23 H 0.082 0.918 24 O -0.381 6.381 25 C 0.031 3.969 26 H 0.061 0.939 27 H 0.031 0.969 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.252 0.748 32 H 0.223 0.777 33 H 0.241 0.759 34 H 0.242 0.758 35 H 0.017 0.983 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.235 -19.200 11.952 22.846 hybrid contribution 0.359 2.008 1.151 2.342 sum 3.594 -17.192 13.103 21.913 Atomic orbital electron populations 1.70185 1.06697 1.26026 1.55052 1.25843 0.96044 1.01603 1.00826 0.85179 0.78686 0.79612 0.76764 1.18960 1.22190 1.21411 1.19585 0.93082 0.85528 1.41350 0.90937 1.44261 1.35697 1.02604 1.50383 1.21037 0.98129 0.85498 0.93660 1.22238 0.96645 0.99970 0.97558 1.20840 0.98150 0.86937 0.87720 0.91694 1.45685 1.66301 1.05065 1.15989 1.17074 0.77277 0.82350 0.85665 1.90825 1.48846 1.78803 1.26079 1.27328 1.11941 0.97835 0.96052 1.66793 1.11664 1.36456 1.00639 1.22234 1.03787 0.86343 1.02362 1.27437 1.06310 1.05501 0.99990 1.84038 1.55700 1.01272 1.07095 1.22572 0.87964 0.94334 0.92041 0.91763 1.86401 1.47768 1.38248 1.65692 1.21201 0.88503 0.97892 0.89255 0.93914 0.96887 0.91246 0.90801 0.90697 0.74817 0.77661 0.75852 0.75800 0.98350 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.89 11.19 21.65 0.24 -53.65 16 2 C -0.05 -2.58 4.92 84.86 0.42 -2.16 16 3 Si 0.97 43.51 29.59 68.60 2.03 45.54 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.27 -14.20 9.58 84.03 0.81 -13.40 16 8 H 0.07 3.75 7.89 -2.91 -0.02 3.73 16 9 N -0.60 -29.95 2.99 -699.12 -2.09 -32.05 16 10 C 0.14 6.04 6.52 86.36 0.56 6.60 16 11 C -0.12 -4.44 5.65 30.68 0.17 -4.27 16 12 C 0.17 6.22 2.12 45.02 0.10 6.31 16 13 H 0.06 2.77 7.58 -2.39 -0.02 2.75 16 14 N -0.68 -21.93 4.91 -445.82 -2.19 -24.12 16 15 C 0.59 19.51 7.77 86.61 0.67 20.19 16 16 O -0.57 -21.82 16.60 -4.09 -0.07 -21.89 16 17 C -0.06 -1.55 7.46 87.26 0.65 -0.90 16 18 N -0.44 -10.25 10.24 -190.31 -1.95 -12.20 16 19 C 0.01 0.14 11.24 83.94 0.94 1.09 16 20 C -0.25 -2.96 11.09 66.90 0.74 -2.21 16 21 S 0.27 4.84 23.03 -56.49 -1.30 3.54 16 22 C 0.09 3.48 3.14 30.67 0.10 3.57 16 23 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 24 O -0.57 -19.87 13.16 -148.98 -1.96 -21.83 16 25 C 0.16 7.52 4.93 86.36 0.43 7.95 16 26 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 27 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.07 2.79 7.93 -2.39 -0.02 2.77 16 29 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.07 2.55 8.14 -2.39 -0.02 2.54 16 31 H 0.42 12.11 8.26 -92.71 -0.77 11.35 16 32 H 0.21 1.85 8.06 -2.91 -0.02 1.83 16 33 H 0.22 0.70 8.06 -2.91 -0.02 0.68 16 34 H 0.39 10.75 9.08 -74.06 -0.67 10.08 16 35 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 36 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 Total: -1.00 -69.27 319.40 -2.01 -71.28 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -0.31 Total: 22.61 kcal Atomic # 6 Polarization: 17.18 SS G_CDS: 5.59 Total: 22.76 kcal Atomic # 7 Polarization: -116.02 SS G_CDS: -5.99 Total: -122.01 kcal Atomic # 8 Polarization: -41.69 SS G_CDS: -2.03 Total: -43.72 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: 4.84 SS G_CDS: -1.30 Total: 3.54 kcal Total: -69.27 -2.01 -71.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090668987.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.322 kcal (2) G-P(sol) polarization free energy of solvation -69.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds