Wall clock time and date at job start Tue Mar 31 2020 03:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 120.00219 * 2 1 4 4 H 1.48501 * 109.47124 * 269.99751 * 3 2 1 5 5 H 1.48501 * 109.47202 * 29.99645 * 3 2 1 6 6 H 1.48500 * 109.47127 * 149.99573 * 3 2 1 7 7 C 1.38947 * 119.99725 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00390 * 180.02562 * 7 2 1 9 9 N 1.37105 * 120.00259 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00048 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99694 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99805 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47219 * 179.97438 * 12 10 9 14 14 C 1.46900 * 110.99988 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.46905 * 179.97438 * 14 13 12 16 16 N 1.46504 * 109.47226 * 179.97438 * 15 14 13 17 17 C 1.34774 * 119.99745 * 179.97438 * 16 15 14 18 18 O 1.21702 * 120.00519 * 359.97438 * 17 16 15 19 19 C 1.46584 * 119.99515 * 180.02562 * 17 16 15 20 20 C 1.36652 * 125.45799 * 180.02562 * 19 17 16 21 21 C 1.37475 * 113.29531 * 179.97438 * 20 19 17 22 22 C 1.33814 * 115.10326 * 0.02562 * 21 20 19 23 23 S 1.70613 * 110.95401 * 359.97438 * 22 21 20 24 24 H 0.97008 * 119.99984 * 0.02562 * 1 2 3 25 25 H 0.96995 * 119.99473 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.47218 * 59.99251 * 12 10 9 27 27 H 1.08997 * 109.47065 * 299.99950 * 12 10 9 28 28 H 1.00905 * 110.99662 * 303.95079 * 13 12 10 29 29 H 1.08994 * 109.47199 * 59.99711 * 14 13 12 30 30 H 1.09000 * 109.46983 * 299.99842 * 14 13 12 31 31 H 1.09007 * 109.47095 * 59.99670 * 15 14 13 32 32 H 1.09000 * 109.47192 * 299.99739 * 15 14 13 33 33 H 0.97002 * 119.99564 * 0.02562 * 16 15 14 34 34 H 1.07998 * 123.35183 * 0.27017 * 20 19 17 35 35 H 1.07999 * 122.44590 * 180.02562 * 21 20 19 36 36 H 1.07999 * 124.52176 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5456 1.4401 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2100 -3.5579 0.0021 12 6 1.2436 -4.8630 0.0022 13 7 2.1981 -5.9796 0.0027 14 6 1.4977 -7.2709 0.0026 15 6 2.5226 -8.4069 0.0025 16 7 1.8242 -9.6947 0.0031 17 6 2.5290 -10.8435 0.0026 18 8 3.7456 -10.8111 0.0012 19 6 1.8302 -12.1320 0.0026 20 6 2.4307 -13.3595 0.0026 21 6 1.5353 -14.4027 0.0032 22 6 0.2461 -14.0444 0.0031 23 16 0.0849 -12.3459 0.0030 24 1 -0.4850 0.8401 -0.0004 25 1 0.3533 -2.3906 0.0005 26 1 0.6171 -4.9212 -0.8880 27 1 0.6166 -4.9201 0.8919 28 1 2.8330 -5.9129 -0.7788 29 1 0.8731 -7.3454 -0.8875 30 1 0.8726 -7.3451 0.8924 31 1 3.1476 -8.3325 0.8925 32 1 3.1474 -8.3324 -0.8875 33 1 0.8545 -9.7205 0.0031 34 1 3.5019 -13.4964 0.0069 35 1 1.8496 -15.4360 0.0037 36 1 -0.5819 -14.7378 0.0039 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122890969.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:14 Heat of formation + Delta-G solvation = -37.489977 kcal Electronic energy + Delta-G solvation = -19832.565554 eV Core-core repulsion = 16443.395809 eV Total energy + Delta-G solvation = -3389.169745 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.00411 -38.35613 -37.89246 -36.28386 -34.42144 -33.76472 -31.26238 -30.71105 -29.09693 -26.30903 -25.09980 -23.84932 -22.29006 -21.57761 -19.72281 -19.27899 -18.87697 -17.90751 -16.53128 -16.35805 -16.08745 -15.84481 -15.44643 -15.24373 -14.55958 -14.24384 -14.05919 -13.84927 -13.48350 -13.28126 -13.19213 -13.12520 -12.68032 -12.42246 -11.94493 -11.54166 -11.50267 -11.45294 -11.41218 -11.03853 -10.39628 -10.37245 -10.22458 -9.52030 -9.47598 -9.21169 -9.03708 -8.51894 -8.14790 -7.97538 -6.42760 -3.83560 0.09463 1.02940 1.43130 2.00150 2.76192 2.92108 3.17695 3.26536 3.32880 3.88868 4.10675 4.33919 4.45725 4.56188 4.84551 4.87403 4.96005 5.05114 5.16074 5.24963 5.35722 5.51835 5.70027 5.71684 5.80304 5.87208 5.89485 5.92827 6.08721 6.23812 7.05468 7.15659 7.54516 7.54973 7.86573 8.05111 8.59840 9.16863 9.52697 10.04025 10.74929 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.050786 B = 0.001980 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.197039 B =14141.416639 C =14664.841655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.582 6.582 12 C 0.052 3.948 13 N -0.665 5.665 14 C 0.048 3.952 15 C 0.121 3.879 16 N -0.724 5.724 17 C 0.590 3.410 18 O -0.525 6.525 19 C -0.265 4.265 20 C -0.056 4.056 21 C -0.150 4.150 22 C -0.230 4.230 23 S 0.200 5.800 24 H 0.271 0.729 25 H 0.392 0.608 26 H 0.045 0.955 27 H 0.088 0.912 28 H 0.353 0.647 29 H 0.034 0.966 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.397 0.603 34 H 0.155 0.845 35 H 0.146 0.854 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.827 -27.019 -0.892 27.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.466 6.466 12 C -0.080 4.080 13 N -0.298 5.298 14 C -0.082 4.082 15 C -0.003 4.003 16 N -0.376 5.376 17 C 0.375 3.625 18 O -0.403 6.403 19 C -0.386 4.386 20 C -0.090 4.090 21 C -0.181 4.181 22 C -0.368 4.368 23 S 0.467 5.533 24 H 0.081 0.919 25 H 0.225 0.775 26 H 0.063 0.937 27 H 0.106 0.894 28 H 0.172 0.828 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.231 0.769 34 H 0.172 0.828 35 H 0.164 0.836 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -5.422 -25.788 -0.206 26.353 hybrid contribution -0.026 -0.348 -0.902 0.967 sum -5.448 -26.136 -1.108 26.721 Atomic orbital electron populations 1.69612 1.05942 1.28174 1.50599 1.25268 0.95654 0.99759 0.97295 0.85843 0.79265 0.80731 0.78374 1.20423 1.20920 1.19373 1.19716 0.93409 0.82202 1.47568 0.87872 1.41857 1.09199 1.04588 1.64339 1.19770 0.88396 0.84691 0.84640 1.90535 1.13721 1.87015 1.55316 1.21673 0.94216 0.90779 1.01373 1.59939 1.18846 0.99383 1.51644 1.22085 0.95532 0.89414 1.01140 1.21347 0.94989 0.80115 1.03833 1.45776 1.10023 1.05985 1.75809 1.16906 0.86726 0.82250 0.76594 1.90864 1.12755 1.86986 1.49655 1.24686 0.97402 0.97854 1.18618 1.20847 1.01897 0.89751 0.96456 1.20080 0.91749 1.01046 1.05209 1.25344 1.01848 1.00687 1.08897 1.83037 1.02368 1.00310 1.67586 0.91869 0.77451 0.93672 0.89416 0.82753 0.94822 0.90352 0.89771 0.90948 0.76894 0.82768 0.83605 0.81303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.42 13.05 55.50 0.72 -23.69 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.19 5.29 -10.96 -0.06 -14.25 16 10 C 0.44 10.32 7.82 -10.99 -0.09 10.23 16 11 O -0.58 -15.85 15.78 5.55 0.09 -15.76 16 12 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 13 N -0.66 -10.43 6.13 -115.06 -0.70 -11.14 16 14 C 0.05 0.55 5.80 -3.82 -0.02 0.53 16 15 C 0.12 1.39 5.93 -4.04 -0.02 1.36 16 16 N -0.72 -7.25 5.55 -61.64 -0.34 -7.59 16 17 C 0.59 7.08 7.78 -12.90 -0.10 6.98 16 18 O -0.52 -8.30 16.84 5.19 0.09 -8.21 16 19 C -0.27 -2.51 6.45 -36.79 -0.24 -2.75 16 20 C -0.06 -0.48 10.01 -40.43 -0.40 -0.89 16 21 C -0.15 -0.96 10.15 -41.41 -0.42 -1.38 16 22 C -0.23 -1.30 10.92 29.18 0.32 -0.98 16 23 S 0.20 1.26 22.16 -107.50 -2.38 -1.12 16 24 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 25 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 28 H 0.35 5.73 8.43 -39.29 -0.33 5.40 16 29 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.40 2.94 7.59 -40.82 -0.31 2.63 16 34 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 36 H 0.17 0.54 8.06 -52.49 -0.42 0.11 16 LS Contribution 334.29 15.07 5.04 5.04 Total: -1.00 -33.84 334.29 -8.10 -41.94 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -4.28 Total: 12.79 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -1.25 Total: 5.97 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.38 Total: -56.67 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: 0.17 Total: -23.97 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.38 Total: -1.12 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.84 -8.10 -41.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122890969.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.454 kcal (2) G-P(sol) polarization free energy of solvation -33.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds