Wall clock time and date at job start Tue Mar 31 2020 03:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 120.00219 * 2 1 4 4 H 1.48501 * 109.47124 * 269.99751 * 3 2 1 5 5 H 1.48501 * 109.47202 * 29.99645 * 3 2 1 6 6 H 1.48500 * 109.47127 * 149.99573 * 3 2 1 7 7 C 1.38947 * 119.99725 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00390 * 180.02562 * 7 2 1 9 9 N 1.37105 * 120.00259 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00048 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99694 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99805 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47219 * 179.97438 * 12 10 9 14 14 C 1.46900 * 110.99988 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.46905 * 179.97438 * 14 13 12 16 16 N 1.46504 * 109.47226 * 179.97438 * 15 14 13 17 17 C 1.34774 * 119.99745 * 179.97438 * 16 15 14 18 18 O 1.21702 * 120.00519 * 359.97438 * 17 16 15 19 19 C 1.46584 * 119.99515 * 180.02562 * 17 16 15 20 20 C 1.36652 * 125.45799 * 180.02562 * 19 17 16 21 21 C 1.37475 * 113.29531 * 179.97438 * 20 19 17 22 22 C 1.33814 * 115.10326 * 0.02562 * 21 20 19 23 23 S 1.70613 * 110.95401 * 359.97438 * 22 21 20 24 24 H 0.97008 * 119.99984 * 0.02562 * 1 2 3 25 25 H 0.96995 * 119.99473 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.47218 * 59.99251 * 12 10 9 27 27 H 1.08997 * 109.47065 * 299.99950 * 12 10 9 28 28 H 1.00905 * 110.99662 * 303.95079 * 13 12 10 29 29 H 1.08994 * 109.47199 * 59.99711 * 14 13 12 30 30 H 1.09000 * 109.46983 * 299.99842 * 14 13 12 31 31 H 1.09007 * 109.47095 * 59.99670 * 15 14 13 32 32 H 1.09000 * 109.47192 * 299.99739 * 15 14 13 33 33 H 0.97002 * 119.99564 * 0.02562 * 16 15 14 34 34 H 1.07998 * 123.35183 * 0.27017 * 20 19 17 35 35 H 1.07999 * 122.44590 * 180.02562 * 21 20 19 36 36 H 1.07999 * 124.52176 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5456 1.4401 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0016 11 8 3.2100 -3.5579 0.0021 12 6 1.2436 -4.8630 0.0022 13 7 2.1981 -5.9796 0.0027 14 6 1.4977 -7.2709 0.0026 15 6 2.5226 -8.4069 0.0025 16 7 1.8242 -9.6947 0.0031 17 6 2.5290 -10.8435 0.0026 18 8 3.7456 -10.8111 0.0012 19 6 1.8302 -12.1320 0.0026 20 6 2.4307 -13.3595 0.0026 21 6 1.5353 -14.4027 0.0032 22 6 0.2461 -14.0444 0.0031 23 16 0.0849 -12.3459 0.0030 24 1 -0.4850 0.8401 -0.0004 25 1 0.3533 -2.3906 0.0005 26 1 0.6171 -4.9212 -0.8880 27 1 0.6166 -4.9201 0.8919 28 1 2.8330 -5.9129 -0.7788 29 1 0.8731 -7.3454 -0.8875 30 1 0.8726 -7.3451 0.8924 31 1 3.1476 -8.3325 0.8925 32 1 3.1474 -8.3324 -0.8875 33 1 0.8545 -9.7205 0.0031 34 1 3.5019 -13.4964 0.0069 35 1 1.8496 -15.4360 0.0037 36 1 -0.5819 -14.7378 0.0039 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122890969.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:14 Heat of formation + Delta-G solvation = -64.747191 kcal Electronic energy + Delta-G solvation = -19833.747516 eV Core-core repulsion = 16443.395809 eV Total energy + Delta-G solvation = -3390.351707 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.093 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.90243 -40.15324 -38.51642 -37.44643 -36.01077 -35.29155 -33.27120 -31.55657 -30.06929 -27.76253 -26.15089 -25.20695 -23.25215 -22.41049 -21.10857 -20.33165 -19.91274 -19.60241 -17.81254 -17.34662 -17.23997 -16.81014 -16.60627 -16.32373 -16.15957 -15.75101 -15.37523 -14.94113 -14.87569 -14.39062 -14.12565 -13.77583 -13.69271 -13.52304 -13.34936 -13.18565 -12.93975 -12.61972 -12.45757 -12.41055 -12.12135 -11.96070 -11.50911 -11.33737 -10.37747 -10.36348 -10.01528 -9.84447 -9.52044 -9.39662 -8.46819 -5.95353 -0.51241 0.48296 0.92206 1.38226 1.39884 1.42331 1.54923 1.88483 2.05276 2.11682 2.30398 3.00557 3.20578 3.53849 3.71570 3.90238 4.08326 4.15180 4.31700 4.35227 4.44042 4.50238 4.54589 4.61153 4.85098 4.89676 5.03144 5.19399 5.22776 5.35576 5.41308 5.83292 6.06430 6.30982 6.33255 6.60249 7.01274 7.12829 7.56274 8.11972 8.70429 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.050786 B = 0.001980 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.197039 B =14141.416639 C =14664.841655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.275 1.275 7 C -0.335 4.335 8 H 0.077 0.923 9 N -0.572 5.572 10 C 0.435 3.565 11 O -0.625 6.625 12 C 0.068 3.932 13 N -0.685 5.685 14 C 0.058 3.942 15 C 0.127 3.873 16 N -0.711 5.711 17 C 0.586 3.414 18 O -0.577 6.577 19 C -0.306 4.306 20 C -0.061 4.061 21 C -0.161 4.161 22 C -0.218 4.218 23 S 0.244 5.756 24 H 0.278 0.722 25 H 0.398 0.602 26 H 0.074 0.926 27 H 0.110 0.890 28 H 0.346 0.654 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.412 0.588 34 H 0.145 0.855 35 H 0.168 0.832 36 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.338 -28.220 -0.997 29.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.200 1.200 7 C -0.464 4.464 8 H 0.096 0.904 9 N -0.209 5.209 10 C 0.222 3.778 11 O -0.512 6.512 12 C -0.064 4.064 13 N -0.318 5.318 14 C -0.071 4.071 15 C 0.003 3.997 16 N -0.363 5.363 17 C 0.374 3.626 18 O -0.458 6.458 19 C -0.426 4.426 20 C -0.096 4.096 21 C -0.191 4.191 22 C -0.356 4.356 23 S 0.511 5.489 24 H 0.087 0.913 25 H 0.232 0.768 26 H 0.092 0.908 27 H 0.128 0.872 28 H 0.165 0.835 29 H 0.077 0.923 30 H 0.113 0.887 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.249 0.751 34 H 0.162 0.838 35 H 0.185 0.815 36 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -8.015 -27.002 -0.310 28.168 hybrid contribution 0.699 -0.091 -0.867 1.117 sum -7.315 -27.093 -1.176 28.088 Atomic orbital electron populations 1.69664 1.06735 1.29307 1.50242 1.26024 0.96580 1.02363 0.96275 0.84934 0.77857 0.76938 0.78643 1.19609 1.19467 1.19960 1.19660 0.92697 0.84102 1.49989 0.90449 1.41916 1.09379 1.04645 1.64992 1.20935 0.88268 0.86304 0.82247 1.90505 1.16036 1.87989 1.56679 1.21533 0.93734 0.87455 1.03713 1.59901 1.19371 1.00752 1.51817 1.22074 0.95182 0.86815 1.03071 1.21137 0.95078 0.81091 1.02378 1.45596 1.10685 1.05013 1.74989 1.17331 0.86319 0.83437 0.75536 1.90826 1.14967 1.87817 1.52197 1.24560 0.99813 0.96698 1.21501 1.21028 1.02097 0.90413 0.96042 1.20243 0.91697 1.01521 1.05665 1.25814 1.02459 1.00931 1.06372 1.82824 0.98973 1.00692 1.66437 0.91266 0.76819 0.90803 0.87191 0.83485 0.92308 0.88673 0.91864 0.92032 0.75113 0.83778 0.81463 0.78217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.12 13.05 21.66 0.28 -48.84 16 2 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 3 Si 0.99 42.97 29.55 68.60 2.03 44.99 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 7 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 8 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 9 N -0.57 -29.07 5.29 -306.98 -1.62 -30.69 16 10 C 0.43 20.50 7.82 87.65 0.69 21.19 16 11 O -0.63 -34.97 15.78 -3.06 -0.05 -35.01 16 12 C 0.07 2.19 6.17 85.55 0.53 2.72 16 13 N -0.69 -20.78 6.13 -517.95 -3.17 -23.95 16 14 C 0.06 1.18 5.80 86.30 0.50 1.68 16 15 C 0.13 2.91 5.93 86.38 0.51 3.43 16 16 N -0.71 -13.78 5.55 -467.16 -2.59 -16.37 16 17 C 0.59 14.37 7.78 86.42 0.67 15.05 16 18 O -0.58 -19.32 16.84 -4.36 -0.07 -19.39 16 19 C -0.31 -5.64 6.45 24.08 0.16 -5.48 16 20 C -0.06 -1.03 10.01 21.72 0.22 -0.82 16 21 C -0.16 -1.73 10.15 21.08 0.21 -1.52 16 22 C -0.22 -1.74 10.92 66.81 0.73 -1.01 16 23 S 0.24 2.45 22.16 -56.49 -1.25 1.20 16 24 H 0.28 13.89 8.31 -92.70 -0.77 13.12 16 25 H 0.40 18.95 7.90 -92.71 -0.73 18.22 16 26 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 27 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 28 H 0.35 11.23 8.43 -89.69 -0.76 10.47 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 30 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.41 5.31 7.59 -92.71 -0.70 4.61 16 34 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 35 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 36 H 0.20 0.34 8.06 -2.91 -0.02 0.31 16 Total: -1.00 -75.69 334.29 -2.01 -77.70 By element: Atomic # 1 Polarization: 34.61 SS G_CDS: -1.05 Total: 33.57 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: 5.50 Total: 16.80 kcal Atomic # 7 Polarization: -112.75 SS G_CDS: -7.11 Total: -119.86 kcal Atomic # 8 Polarization: -54.28 SS G_CDS: -0.12 Total: -54.41 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -1.25 Total: 1.20 kcal Total: -75.69 -2.01 -77.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122890969.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.951 kcal (2) G-P(sol) polarization free energy of solvation -75.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds