Wall clock time and date at job start Tue Mar 31 2020 03:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99444 * 2 1 4 4 H 1.48494 * 109.47215 * 270.00073 * 3 2 1 5 5 H 1.48498 * 109.47161 * 30.00407 * 3 2 1 6 6 H 1.48506 * 109.46747 * 149.99939 * 3 2 1 7 7 C 1.37872 * 120.00459 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00152 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99971 * 359.97438 * 7 2 1 10 10 O 1.42100 * 106.40203 * 66.46418 * 9 7 2 11 11 O 1.42092 * 106.40312 * 293.53918 * 9 7 2 12 12 N 1.65603 * 107.21650 * 179.97438 * 9 7 2 13 13 C 1.47159 * 120.98027 * 94.62955 * 12 9 7 14 14 C 1.53300 * 108.38257 * 230.51339 * 13 12 9 15 15 O 1.42959 * 109.21924 * 307.69502 * 14 13 12 16 16 C 1.42963 * 114.16976 * 62.58624 * 15 14 13 17 17 C 1.47150 * 120.98585 * 274.60311 * 12 9 7 18 18 H 1.08993 * 109.68307 * 249.21081 * 17 12 9 19 19 C 1.50704 * 109.70971 * 9.74710 * 17 12 9 20 20 C 1.38227 * 119.99805 * 245.72581 * 19 17 12 21 21 C 1.38244 * 120.00158 * 179.74627 * 20 19 17 22 22 C 1.38237 * 119.99414 * 0.52995 * 21 20 19 23 23 C 1.38232 * 120.00084 * 359.74523 * 22 21 20 24 24 C 1.38236 * 120.00336 * 359.97438 * 23 22 21 25 25 H 0.96994 * 120.00414 * 0.02562 * 1 2 3 26 26 H 1.08992 * 109.68120 * 110.78412 * 13 12 9 27 27 H 1.09005 * 109.67907 * 350.23126 * 13 12 9 28 28 H 1.09004 * 109.51005 * 187.77199 * 14 13 12 29 29 H 1.09002 * 109.51294 * 67.62137 * 14 13 12 30 30 H 1.08995 * 109.51201 * 57.33378 * 16 15 14 31 31 H 1.09001 * 109.51327 * 177.49256 * 16 15 14 32 32 H 1.08002 * 120.00345 * 359.97438 * 20 19 17 33 33 H 1.08000 * 120.00369 * 180.29764 * 21 20 19 34 34 H 1.07994 * 120.00106 * 179.77139 * 22 21 20 35 35 H 1.08001 * 120.00326 * 180.02562 * 23 22 21 36 36 H 1.07999 * 120.00631 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 16 1.1237 -2.7199 -0.0005 10 8 0.4512 -2.7950 -1.2501 11 8 0.4521 -2.7956 1.2494 12 7 2.2487 -3.9353 -0.0019 13 6 2.6894 -4.5609 1.2550 14 6 4.2222 -4.5620 1.2829 15 8 4.7144 -5.1479 0.0754 16 6 4.3621 -4.4298 -1.1096 17 6 2.8366 -4.4219 -1.2601 18 1 2.4826 -5.4323 -1.4640 19 6 2.4429 -3.5081 -2.3919 20 6 1.6285 -3.9755 -3.4062 21 6 1.2630 -3.1358 -4.4418 22 6 1.7211 -1.8318 -4.4686 23 6 2.5403 -1.3660 -3.4572 24 6 2.9009 -2.2040 -2.4187 25 1 -0.4850 0.8400 -0.0004 26 1 2.3205 -5.5853 1.3042 27 1 2.3073 -3.9914 2.1022 28 1 4.5703 -5.1423 2.1374 29 1 4.5856 -3.5377 1.3652 30 1 4.7260 -3.4050 -1.0360 31 1 4.8110 -4.9150 -1.9763 32 1 1.2745 -4.9957 -3.3878 33 1 0.6227 -3.4996 -5.2318 34 1 1.4387 -1.1768 -5.2795 35 1 2.8979 -0.3472 -3.4779 36 1 3.5413 -1.8403 -1.6287 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192950981.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:13 Heat of formation + Delta-G solvation = -87.718950 kcal Electronic energy + Delta-G solvation = -23787.329277 eV Core-core repulsion = 20363.688689 eV Total energy + Delta-G solvation = -3423.640588 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.50851 -37.99798 -35.22568 -34.43630 -33.88859 -33.09764 -32.07212 -30.20572 -28.84915 -26.42637 -26.12700 -24.00978 -22.17627 -21.21941 -20.39410 -18.57348 -17.55787 -16.61570 -16.15500 -15.71095 -15.27074 -15.19255 -14.99152 -14.62846 -14.27217 -13.89024 -13.86737 -13.28168 -13.14671 -12.67005 -12.25054 -12.10383 -11.93308 -11.70600 -11.33856 -11.22245 -11.10566 -10.84980 -10.66286 -10.52961 -10.27618 -10.21780 -10.11065 -10.00051 -9.75593 -9.24713 -8.83335 -8.18463 -8.04501 -7.80879 -6.70181 -5.27335 1.97381 2.24467 2.31283 3.02106 3.10156 3.14796 4.00613 4.06469 4.32811 4.63011 4.71090 5.07255 5.19538 5.36743 5.42906 5.46657 5.56903 5.65960 5.67994 5.79249 5.88330 5.90198 5.97224 6.03584 6.18680 6.23516 6.35713 6.42709 6.67927 6.71923 6.79608 7.15692 7.24367 7.28060 7.30922 7.35259 7.54749 7.77872 7.92137 8.87402 10.23441 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.013291 B = 0.010099 C = 0.007645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.144991 B = 2771.970952 C = 3661.757368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.140 3.860 3 Si 0.909 3.091 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.263 1.263 7 C -1.011 5.011 8 H 0.100 0.900 9 S 2.710 3.290 10 O -0.979 6.979 11 O -1.011 7.011 12 N -1.012 6.012 13 C 0.091 3.909 14 C 0.047 3.953 15 O -0.384 6.384 16 C 0.055 3.945 17 C 0.174 3.826 18 H 0.077 0.923 19 C -0.102 4.102 20 C -0.067 4.067 21 C -0.126 4.126 22 C -0.113 4.113 23 C -0.112 4.112 24 C -0.079 4.079 25 H 0.289 0.711 26 H 0.065 0.935 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.107 -5.633 -4.083 10.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.078 4.078 3 Si 0.733 3.267 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.187 1.187 7 C -1.144 5.144 8 H 0.118 0.882 9 S 2.812 3.188 10 O -0.969 6.969 11 O -1.002 7.002 12 N -0.848 5.848 13 C -0.036 4.036 14 C -0.031 4.031 15 O -0.302 6.302 16 C -0.023 4.023 17 C 0.068 3.932 18 H 0.095 0.905 19 C -0.103 4.103 20 C -0.086 4.086 21 C -0.145 4.145 22 C -0.131 4.131 23 C -0.130 4.130 24 C -0.097 4.097 25 H 0.100 0.900 26 H 0.083 0.917 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.118 0.882 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.074 -5.883 -4.048 10.052 hybrid contribution 0.536 1.648 0.181 1.743 sum 7.610 -4.234 -3.867 9.529 Atomic orbital electron populations 1.69887 1.06715 1.30505 1.40055 1.24608 0.94288 1.00277 0.88667 0.86331 0.80327 0.80760 0.79232 1.19100 1.20082 1.18707 1.30622 1.05540 1.11834 1.66365 0.88219 1.00743 0.72213 0.73014 0.72826 1.93455 1.72287 1.86984 1.44146 1.93336 1.72752 1.87671 1.46394 1.58620 1.61982 1.54758 1.09407 1.21895 0.94899 0.99203 0.87562 1.22984 0.93868 0.98976 0.87319 1.87870 1.75579 1.52338 1.14402 1.23053 0.93915 0.97431 0.87898 1.20174 0.93643 0.96874 0.82527 0.90460 1.19463 1.00100 0.94736 0.96004 1.20576 0.95424 0.98936 0.93682 1.20793 1.00536 0.94301 0.98830 1.20949 0.98028 0.95578 0.98586 1.20816 0.98862 0.98703 0.94615 1.21159 0.99165 0.92223 0.97157 0.90039 0.91659 0.88246 0.88356 0.92398 0.92148 0.88247 0.87204 0.87167 0.87310 0.87080 0.85346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.14 13.19 55.43 0.73 -23.40 16 2 C 0.14 3.73 5.46 -17.82 -0.10 3.63 16 3 Si 0.91 19.87 29.54 -169.99 -5.02 14.85 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 6 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 7 C -1.01 -26.17 7.07 30.60 0.22 -25.95 16 8 H 0.10 2.35 6.44 -52.49 -0.34 2.02 16 9 S 2.71 70.44 4.34 -107.50 -0.47 69.98 16 10 O -0.98 -27.03 13.70 -57.17 -0.78 -27.82 16 11 O -1.01 -29.58 16.68 -57.17 -0.95 -30.53 16 12 N -1.01 -20.62 3.33 -107.25 -0.36 -20.98 16 13 C 0.09 1.56 6.59 -3.53 -0.02 1.54 16 14 C 0.05 0.68 6.99 37.31 0.26 0.94 16 15 O -0.38 -5.91 10.74 -35.23 -0.38 -6.29 16 16 C 0.06 0.83 6.15 37.31 0.23 1.06 16 17 C 0.17 3.09 3.28 -68.57 -0.22 2.87 16 18 H 0.08 1.27 7.90 -51.93 -0.41 0.86 16 19 C -0.10 -1.95 2.65 -104.62 -0.28 -2.22 16 20 C -0.07 -1.24 8.59 -39.58 -0.34 -1.58 16 21 C -0.13 -2.23 10.05 -39.58 -0.40 -2.62 16 22 C -0.11 -2.03 10.05 -39.58 -0.40 -2.42 16 23 C -0.11 -2.15 10.05 -39.58 -0.40 -2.54 16 24 C -0.08 -1.55 5.86 -39.58 -0.23 -1.79 16 25 H 0.29 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.10 1.79 7.12 -51.93 -0.37 1.42 16 28 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.92 6.78 -51.93 -0.35 0.56 16 31 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.11 1.76 7.96 -52.49 -0.42 1.34 16 33 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 35 H 0.11 1.96 8.06 -52.49 -0.42 1.54 16 36 H 0.13 2.50 4.91 -52.49 -0.26 2.24 16 LS Contribution 301.79 15.07 4.55 4.55 Total: -1.00 -33.80 301.79 -8.60 -42.40 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -4.24 Total: 6.34 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: -1.68 Total: -29.09 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.37 Total: -44.38 kcal Atomic # 8 Polarization: -62.53 SS G_CDS: -2.12 Total: -64.64 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Atomic # 16 Polarization: 70.44 SS G_CDS: -0.47 Total: 69.98 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.80 -8.60 -42.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192950981.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.317 kcal (2) G-P(sol) polarization free energy of solvation -33.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds