Wall clock time and date at job start Tue Mar 31 2020 03:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35906 * 116.99853 * 2 1 4 4 C 1.38444 * 119.76815 * 359.95494 * 3 2 1 5 5 C 1.38136 * 119.76629 * 179.97438 * 4 3 2 6 6 C 1.38028 * 119.77445 * 0.19659 * 5 4 3 7 7 C 1.38837 * 120.62675 * 0.04410 * 6 5 4 8 8 C 1.37615 * 119.87993 * 359.58765 * 7 6 5 9 9 C 1.50599 * 122.89393 * 180.61032 * 8 7 6 10 10 C 1.52787 * 110.82260 * 340.27722 * 9 8 7 11 11 N 1.47136 * 107.94844 * 47.40394 * 10 9 8 12 12 S 1.65598 * 121.36577 * 115.64230 * 11 10 9 13 13 O 1.42094 * 106.40496 * 23.57001 * 12 11 10 14 14 O 1.42102 * 106.39836 * 156.48745 * 12 11 10 15 15 C 1.76202 * 107.22115 * 270.02593 * 12 11 10 16 16 H 1.08001 * 119.99970 * 0.02562 * 15 12 11 17 17 C 1.37875 * 119.99814 * 180.02562 * 15 12 11 18 18 N 1.31523 * 119.99689 * 180.02562 * 17 15 12 19 19 Si 1.86793 * 120.00294 * 0.02562 * 17 15 12 20 20 H 1.48501 * 109.47178 * 90.00111 * 19 17 15 21 21 H 1.48500 * 109.47124 * 210.00087 * 19 17 15 22 22 H 1.48502 * 109.47466 * 330.00134 * 19 17 15 23 23 C 1.46685 * 117.28011 * 295.67327 * 11 10 9 24 24 H 1.09004 * 109.47229 * 299.99824 * 1 2 3 25 25 H 1.09000 * 109.47429 * 59.99438 * 1 2 3 26 26 H 1.08999 * 109.47026 * 180.02562 * 1 2 3 27 27 H 1.08003 * 120.11998 * 359.95149 * 4 3 2 28 28 H 1.07999 * 120.11211 * 180.17741 * 5 4 3 29 29 H 1.07997 * 119.68418 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.20072 * 100.60911 * 9 8 7 31 31 H 1.09002 * 109.19759 * 219.94558 * 9 8 7 32 32 H 1.09000 * 109.77747 * 166.97282 * 10 9 8 33 33 H 1.09010 * 109.77608 * 287.77410 * 10 9 8 34 34 H 0.96996 * 120.00057 * 180.02562 * 18 17 15 35 35 H 1.08996 * 109.43290 * 284.28469 * 23 11 10 36 36 H 1.09000 * 109.43308 * 164.41328 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2872 2.3690 -0.0009 5 6 1.9143 3.5997 -0.0004 6 6 3.2930 3.6666 -0.0030 7 6 4.0573 2.5075 -0.0072 8 6 3.4386 1.2783 0.0000 9 6 4.2004 -0.0208 0.0096 10 6 5.6355 0.1876 -0.4716 11 7 6.1856 1.3552 0.2349 12 16 7.4604 1.2075 1.2814 13 8 8.1561 0.0279 0.9025 14 8 8.0766 2.4863 1.3460 15 6 6.7893 0.8973 2.8808 16 1 5.7193 0.8381 3.0152 17 6 7.6300 0.7301 3.9606 18 7 7.1290 0.4980 5.1544 19 14 9.4806 0.8332 3.7283 20 1 9.9255 2.2376 3.9154 21 1 10.1540 -0.0364 4.7261 22 1 9.8336 0.3804 2.3588 23 6 5.5581 2.6553 -0.0250 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.2088 2.3103 -0.0025 28 1 1.3279 4.5067 0.0018 29 1 3.7818 4.6296 -0.0022 30 1 4.2168 -0.4192 1.0240 31 1 3.7019 -0.7335 -0.6475 32 1 6.2327 -0.6952 -0.2437 33 1 5.6413 0.3704 -1.5462 34 1 7.7205 0.3808 5.9141 35 1 5.8749 3.0222 -1.0012 36 1 5.8619 3.3649 0.7446 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192967494.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:52 Heat of formation + Delta-G solvation = -111.193401 kcal Electronic energy + Delta-G solvation = -22503.818065 eV Core-core repulsion = 19079.159548 eV Total energy + Delta-G solvation = -3424.658516 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.41747 -39.19015 -37.79548 -37.09158 -36.53257 -35.19676 -33.40617 -32.00973 -29.93231 -28.56167 -28.12037 -25.97908 -24.67596 -22.81281 -21.55656 -20.27498 -19.33332 -18.85403 -18.50542 -17.38872 -17.13053 -16.85169 -16.66968 -16.42839 -15.83622 -15.53110 -15.17205 -15.00545 -14.75708 -14.69140 -14.42939 -13.83680 -13.58749 -13.49139 -13.22745 -13.12102 -12.92116 -12.73604 -12.70368 -12.60253 -12.34867 -12.16206 -11.86649 -11.75109 -11.49388 -11.34347 -11.18192 -9.95746 -9.55634 -9.01117 -8.97008 -7.53165 0.04782 0.36974 0.50713 1.03648 1.13372 1.20225 1.88079 2.33420 2.40738 2.44937 2.78235 3.33869 3.63698 3.75002 3.93967 4.05109 4.14029 4.22109 4.29043 4.40799 4.41899 4.43471 4.52297 4.62761 4.64148 4.71319 4.75715 4.80970 4.97534 5.12474 5.25871 5.37994 5.40406 5.54034 5.65364 5.77995 5.88573 6.01436 6.50793 6.52557 8.21273 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.022351 B = 0.005277 C = 0.005079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.435810 B = 5304.658902 C = 5511.238584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.112 3.888 4 C -0.213 4.213 5 C -0.081 4.081 6 C -0.159 4.159 7 C -0.069 4.069 8 C -0.119 4.119 9 C -0.085 4.085 10 C 0.119 3.881 11 N -1.002 6.002 12 S 2.700 3.300 13 O -1.021 7.021 14 O -1.023 7.023 15 C -1.036 5.036 16 H 0.097 0.903 17 C 0.107 3.893 18 N -0.855 5.855 19 Si 0.826 3.174 20 H -0.237 1.237 21 H -0.218 1.218 22 H -0.228 1.228 23 C 0.160 3.840 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.116 0.884 27 H 0.154 0.846 28 H 0.158 0.842 29 H 0.146 0.854 30 H 0.055 0.945 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.291 0.709 35 H 0.107 0.893 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.509 3.237 -12.288 18.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.067 3.933 4 C -0.231 4.231 5 C -0.099 4.099 6 C -0.178 4.178 7 C -0.070 4.070 8 C -0.120 4.120 9 C -0.124 4.124 10 C -0.005 4.005 11 N -0.839 5.839 12 S 2.801 3.199 13 O -1.011 7.011 14 O -1.013 7.013 15 C -1.168 5.168 16 H 0.115 0.885 17 C -0.110 4.110 18 N -0.486 5.486 19 Si 0.642 3.358 20 H -0.160 1.160 21 H -0.140 1.140 22 H -0.150 1.150 23 C 0.035 3.965 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.134 0.866 27 H 0.171 0.829 28 H 0.176 0.824 29 H 0.163 0.837 30 H 0.074 0.926 31 H 0.120 0.880 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.125 0.875 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.498 3.056 -12.333 17.822 hybrid contribution -0.157 -0.148 1.118 1.138 sum -12.655 2.908 -11.215 17.158 Atomic orbital electron populations 1.23329 0.76557 1.05403 1.02216 1.86039 1.23342 1.26877 1.88624 1.19136 0.91475 0.85281 0.97456 1.21452 1.01064 0.91901 1.08684 1.21194 0.94086 0.98048 0.96552 1.21258 0.94601 0.97900 1.04030 1.19814 0.95450 0.92921 0.98850 1.18949 0.91074 0.95385 1.06586 1.20590 0.94888 0.94883 1.02020 1.21555 0.93671 0.87594 0.97721 1.57441 1.52041 1.14531 1.59912 1.00540 0.72363 0.72510 0.74472 1.93417 1.72506 1.50368 1.84842 1.93366 1.75721 1.43821 1.88381 1.31046 1.05437 1.64637 1.15669 0.88492 1.25223 1.02764 0.88723 0.94241 1.70030 1.38839 1.39238 1.00460 0.87482 0.81283 0.82731 0.84268 1.15974 1.14019 1.15011 1.20369 0.88598 0.83963 1.03545 0.92172 0.91134 0.86613 0.82884 0.82449 0.83668 0.92628 0.87958 0.89231 0.88086 0.89856 0.87510 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.80 113.37 1.11 1.41 16 2 O -0.33 -8.75 9.47 -92.49 -0.88 -9.63 16 3 C 0.11 3.18 6.65 22.61 0.15 3.33 16 4 C -0.21 -4.81 9.02 22.29 0.20 -4.61 16 5 C -0.08 -1.74 10.05 22.20 0.22 -1.51 16 6 C -0.16 -4.05 9.62 22.36 0.22 -3.84 16 7 C -0.07 -2.17 5.82 -19.83 -0.12 -2.29 16 8 C -0.12 -3.89 5.78 -19.76 -0.11 -4.01 16 9 C -0.09 -2.85 5.50 29.75 0.16 -2.68 16 10 C 0.12 4.09 6.45 86.19 0.56 4.65 16 11 N -1.00 -40.50 3.26 -518.06 -1.69 -42.19 16 12 S 2.70 138.40 4.22 -56.49 -0.24 138.16 16 13 O -1.02 -55.09 14.71 -128.00 -1.88 -56.97 16 14 O -1.02 -54.63 15.75 -128.00 -2.02 -56.65 16 15 C -1.04 -60.60 10.29 67.73 0.70 -59.91 16 16 H 0.10 5.97 8.06 -2.91 -0.02 5.95 16 17 C 0.11 6.32 5.47 84.65 0.46 6.78 16 18 N -0.86 -50.94 13.96 21.45 0.30 -50.64 16 19 Si 0.83 41.82 26.54 68.60 1.82 43.64 16 20 H -0.24 -11.53 7.11 99.48 0.71 -10.83 16 21 H -0.22 -9.70 7.11 99.48 0.71 -9.00 16 22 H -0.23 -11.79 5.61 99.48 0.56 -11.23 16 23 C 0.16 5.46 6.09 85.64 0.52 5.98 16 24 H 0.06 0.86 7.65 -2.39 -0.02 0.84 16 25 H 0.07 0.84 7.64 -2.39 -0.02 0.83 16 26 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.15 2.45 6.26 -2.91 -0.02 2.44 16 28 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 29 H 0.15 2.99 8.05 -2.91 -0.02 2.97 16 30 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.10 2.89 7.66 -2.39 -0.02 2.87 16 32 H 0.09 3.21 7.03 -2.39 -0.02 3.20 16 33 H 0.10 2.76 8.14 -2.38 -0.02 2.74 16 34 H 0.29 15.54 8.31 -92.71 -0.77 14.77 16 35 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 36 H 0.09 3.27 7.42 -2.39 -0.02 3.25 16 Total: -1.00 -74.04 306.97 0.44 -73.60 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.95 Total: 17.37 kcal Atomic # 6 Polarization: -60.77 SS G_CDS: 4.07 Total: -56.70 kcal Atomic # 7 Polarization: -91.44 SS G_CDS: -1.39 Total: -92.83 kcal Atomic # 8 Polarization: -118.47 SS G_CDS: -4.77 Total: -123.24 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 1.82 Total: 43.64 kcal Atomic # 16 Polarization: 138.40 SS G_CDS: -0.24 Total: 138.16 kcal Total: -74.04 0.44 -73.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192967494.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.594 kcal (2) G-P(sol) polarization free energy of solvation -74.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds