Wall clock time and date at job start Tue Mar 31 2020 03:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38242 * 119.99655 * 2 1 4 4 C 1.38228 * 119.99713 * 179.76711 * 3 2 1 5 5 C 1.38234 * 120.00027 * 0.48365 * 4 3 2 6 6 C 1.50703 * 120.00215 * 179.76711 * 5 4 3 7 7 N 1.46497 * 113.00304 * 200.35824 * 6 5 4 8 8 S 1.65604 * 120.00035 * 175.35019 * 7 6 5 9 9 O 1.42098 * 106.39873 * 181.38988 * 8 7 6 10 10 O 1.42097 * 106.40424 * 314.30866 * 8 7 6 11 11 C 1.76204 * 107.21406 * 67.85014 * 8 7 6 12 12 H 1.08000 * 120.00336 * 5.53606 * 11 8 7 13 13 C 1.37880 * 119.99382 * 185.53614 * 11 8 7 14 14 N 1.31511 * 120.00242 * 359.97438 * 13 11 8 15 15 Si 1.86801 * 119.99391 * 180.02562 * 13 11 8 16 16 H 1.48496 * 109.47605 * 59.99974 * 15 13 11 17 17 H 1.48500 * 109.47033 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47078 * 299.99431 * 15 13 11 19 19 C 1.54032 * 113.81621 * 68.52966 * 6 5 4 20 20 O 1.44441 * 85.42859 * 223.23954 * 19 6 5 21 21 C 1.44178 * 93.37884 * 24.09064 * 20 19 6 22 22 C 1.38233 * 120.00055 * 359.79409 * 5 4 3 23 23 C 1.38231 * 120.00261 * 359.95205 * 22 5 4 24 24 H 1.09002 * 109.47153 * 269.72376 * 1 2 3 25 25 H 1.08997 * 109.47658 * 29.72400 * 1 2 3 26 26 H 1.08999 * 109.47084 * 149.72756 * 1 2 3 27 27 H 1.08004 * 119.99684 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.00260 * 180.25544 * 4 3 2 29 29 H 0.97001 * 119.99910 * 355.35045 * 7 6 5 30 30 H 0.97002 * 119.99692 * 180.02562 * 14 13 11 31 31 H 1.09005 * 113.86455 * 337.34427 * 19 6 5 32 32 H 1.08996 * 113.86335 * 109.04780 * 19 6 5 33 33 H 1.09008 * 113.86301 * 221.77081 * 21 20 19 34 34 H 1.09000 * 113.86706 * 90.06322 * 21 20 19 35 35 H 1.08008 * 120.00081 * 179.97438 * 22 5 4 36 36 H 1.08000 * 120.00643 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0049 5 6 4.2716 0.0002 -0.0004 6 6 5.7787 0.0002 -0.0004 7 7 6.3512 -1.2620 -0.4750 8 16 7.9905 -1.4117 -0.6555 9 8 8.2212 -2.7220 -1.1545 10 8 8.4295 -0.2370 -1.3238 11 6 8.6994 -1.3612 0.9569 12 1 8.0604 -1.3392 1.8273 13 6 10.0699 -1.3499 1.1072 14 7 10.8480 -1.3773 0.0473 15 14 10.8215 -1.2972 2.8166 16 1 10.3860 -2.4904 3.5859 17 1 12.3023 -1.2922 2.7063 18 1 10.3737 -0.0664 3.5164 19 6 6.4007 0.5102 1.3132 20 8 7.3138 1.2383 0.4632 21 6 6.4006 1.2495 -0.6525 22 6 3.5805 -1.1970 -0.0062 23 6 2.1982 -1.1971 -0.0057 24 1 -0.3633 -0.0050 1.0277 25 1 -0.3634 0.8924 -0.5095 26 1 -0.3633 -0.8875 -0.5181 27 1 1.6580 2.1325 -0.0004 28 1 4.1204 2.1326 0.0090 29 1 5.7700 -2.0101 -0.6836 30 1 11.8122 -1.3697 0.1532 31 1 5.7371 1.1486 1.8966 32 1 6.8763 -0.2697 1.9079 33 1 6.8764 1.0546 -1.6137 34 1 5.7371 2.1141 -0.6707 35 1 4.1206 -2.1323 -0.0107 36 1 1.6582 -2.1324 -0.0107 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192993939.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:19 Heat of formation + Delta-G solvation = -87.409072 kcal Electronic energy + Delta-G solvation = -22679.351789 eV Core-core repulsion = 19255.724638 eV Total energy + Delta-G solvation = -3423.627151 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.02909 -39.77028 -37.29185 -36.08169 -35.49465 -35.04711 -33.29071 -31.83074 -29.49158 -28.54857 -27.20193 -26.80238 -23.66518 -22.68256 -21.11975 -20.70640 -19.43484 -18.96058 -17.55426 -17.20322 -16.76830 -16.71648 -16.12627 -15.94228 -15.87776 -15.73398 -15.44638 -14.66554 -14.54526 -14.35206 -14.06394 -13.92854 -13.55589 -13.04581 -12.98642 -12.88674 -12.62116 -12.57520 -12.51509 -12.42585 -12.29963 -11.93363 -11.82498 -11.23397 -11.15793 -10.89623 -10.50530 -10.42738 -9.82479 -9.39037 -8.68801 -7.36007 0.27110 0.39992 0.50651 1.34569 1.37985 1.48640 2.22908 2.61463 2.67678 2.73496 2.93272 3.43837 3.56878 3.80628 3.95487 4.05295 4.11789 4.16166 4.35952 4.38955 4.56384 4.57580 4.70093 4.82720 4.86202 4.91219 4.97683 5.05143 5.08755 5.20923 5.31513 5.37775 5.41414 5.50609 5.67812 5.72188 5.96328 6.10984 6.24973 6.86120 8.28193 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.026635 B = 0.004946 C = 0.004801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.987661 B = 5660.335413 C = 5831.293581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.090 4.090 3 C -0.117 4.117 4 C -0.112 4.112 5 C -0.096 4.096 6 C 0.168 3.832 7 N -1.102 6.102 8 S 2.717 3.283 9 O -1.054 7.054 10 O -1.015 7.015 11 C -1.019 5.019 12 H 0.122 0.878 13 C 0.075 3.925 14 N -0.896 5.896 15 Si 0.983 3.017 16 H -0.250 1.250 17 H -0.268 1.268 18 H -0.252 1.252 19 C 0.004 3.996 20 O -0.381 6.381 21 C 0.012 3.988 22 C -0.122 4.122 23 C -0.123 4.123 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.150 0.850 28 H 0.140 0.860 29 H 0.415 0.585 30 H 0.295 0.705 31 H 0.120 0.880 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.456 4.980 4.086 21.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.090 4.090 3 C -0.135 4.135 4 C -0.130 4.130 5 C -0.098 4.098 6 C 0.078 3.922 7 N -0.859 5.859 8 S 2.819 3.181 9 O -1.044 7.044 10 O -1.004 7.004 11 C -1.153 5.153 12 H 0.140 0.860 13 C -0.137 4.137 14 N -0.527 5.527 15 Si 0.802 3.198 16 H -0.174 1.174 17 H -0.192 1.192 18 H -0.176 1.176 19 C -0.074 4.074 20 O -0.300 6.300 21 C -0.066 4.066 22 C -0.140 4.140 23 C -0.141 4.141 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.168 0.832 28 H 0.158 0.842 29 H 0.250 0.750 30 H 0.105 0.895 31 H 0.137 0.863 32 H 0.118 0.882 33 H 0.108 0.892 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -19.464 5.104 3.181 20.372 hybrid contribution 0.654 -0.624 0.850 1.241 sum -18.810 4.480 4.031 19.752 Atomic orbital electron populations 1.20841 0.89038 1.03756 1.03203 1.20346 0.97683 0.92841 0.98162 1.21314 0.93243 0.98873 1.00090 1.21202 0.95010 0.97140 0.99627 1.19586 0.91748 0.95215 1.03227 1.21643 0.91615 0.84508 0.94484 1.55395 1.26700 1.20053 1.83709 1.00034 0.70145 0.71356 0.76572 1.93317 1.84395 1.43471 1.83216 1.93304 1.79910 1.50392 1.76828 1.30851 1.01965 1.65800 1.16698 0.85997 1.25868 0.96478 0.87661 1.03694 1.69995 1.07572 1.42107 1.33063 0.85261 0.77443 0.80545 0.76525 1.17356 1.19186 1.17617 1.25240 0.91385 0.96182 0.94567 1.89977 1.35654 1.78830 1.25498 1.25115 0.90887 0.96932 0.93707 1.21125 0.95189 0.97563 1.00123 1.21265 0.93163 0.99050 1.00585 0.90178 0.90344 0.90842 0.83202 0.84221 0.74957 0.89503 0.86251 0.88154 0.89156 0.86060 0.86114 0.84107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.01 71.24 0.71 -0.49 16 2 C -0.09 -1.56 5.88 -19.86 -0.12 -1.67 16 3 C -0.12 -2.06 9.70 22.27 0.22 -1.84 16 4 C -0.11 -2.42 9.08 22.27 0.20 -2.22 16 5 C -0.10 -2.61 5.26 -19.87 -0.10 -2.72 16 6 C 0.17 5.88 1.77 3.56 0.01 5.89 16 7 N -1.10 -44.99 5.81 -183.42 -1.07 -46.05 16 8 S 2.72 149.06 4.60 -56.49 -0.26 148.80 16 9 O -1.05 -64.57 18.02 -128.00 -2.31 -66.87 16 10 O -1.01 -60.77 13.62 -119.78 -1.63 -62.40 16 11 C -1.02 -56.43 7.83 67.74 0.53 -55.90 16 12 H 0.12 6.02 5.47 -2.91 -0.02 6.00 16 13 C 0.08 4.27 5.46 84.66 0.46 4.73 16 14 N -0.90 -54.72 13.08 21.45 0.28 -54.44 16 15 Si 0.98 42.44 29.54 68.60 2.03 44.47 16 16 H -0.25 -10.04 7.11 99.48 0.71 -9.34 16 17 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 18 H -0.25 -10.34 7.11 99.48 0.71 -9.63 16 19 C 0.00 0.15 7.67 72.29 0.55 0.70 16 20 O -0.38 -16.90 10.19 -129.21 -1.32 -18.22 16 21 C 0.01 0.43 7.43 72.30 0.54 0.97 16 22 C -0.12 -3.05 9.26 22.27 0.21 -2.84 16 23 C -0.12 -2.44 9.70 22.27 0.22 -2.23 16 24 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.08 0.67 8.08 -2.39 -0.02 0.65 16 26 H 0.07 0.70 8.09 -2.39 -0.02 0.68 16 27 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 28 H 0.14 2.60 6.16 -2.91 -0.02 2.58 16 29 H 0.41 14.67 6.64 -96.74 -0.64 14.03 16 30 H 0.30 16.37 8.31 -92.71 -0.77 15.60 16 31 H 0.12 3.23 8.03 -2.38 -0.02 3.21 16 32 H 0.10 3.84 5.04 -2.39 -0.01 3.83 16 33 H 0.09 3.92 6.21 -2.38 -0.01 3.90 16 34 H 0.12 3.33 5.92 -2.39 -0.01 3.31 16 35 H 0.12 3.01 6.33 -2.91 -0.02 3.00 16 36 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -79.85 303.76 -0.36 -80.20 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: 0.49 Total: 32.13 kcal Atomic # 6 Polarization: -61.03 SS G_CDS: 3.42 Total: -57.61 kcal Atomic # 7 Polarization: -99.71 SS G_CDS: -0.79 Total: -100.50 kcal Atomic # 8 Polarization: -142.24 SS G_CDS: -5.25 Total: -147.49 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 16 Polarization: 149.06 SS G_CDS: -0.26 Total: 148.80 kcal Total: -79.85 -0.36 -80.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192993939.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.204 kcal (2) G-P(sol) polarization free energy of solvation -79.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds