Wall clock time and date at job start Tue Mar 31 2020 03:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00679 * 2 1 4 4 H 1.48494 * 109.47083 * 240.00434 * 3 2 1 5 5 H 1.48502 * 109.46517 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47226 * 120.00272 * 3 2 1 7 7 C 1.37882 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00234 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00052 * 359.97438 * 7 2 1 10 10 O 1.42101 * 106.40303 * 66.45698 * 9 7 2 11 11 O 1.42100 * 106.40170 * 293.53949 * 9 7 2 12 12 N 1.65595 * 107.22091 * 180.02562 * 9 7 2 13 13 C 1.46508 * 119.99955 * 64.99810 * 12 9 7 14 14 C 1.53002 * 109.46643 * 165.00124 * 13 12 9 15 15 H 1.08999 * 109.72980 * 55.58241 * 14 13 12 16 16 C 1.53404 * 109.69947 * 294.99572 * 14 13 12 17 17 O 1.42831 * 108.41099 * 175.57584 * 16 14 13 18 18 C 1.35921 * 117.80648 * 49.16688 * 17 16 14 19 19 C 1.39152 * 118.47486 * 163.02837 * 18 17 16 20 20 C 1.37966 * 120.21350 * 179.57121 * 19 18 17 21 21 C 1.38289 * 119.95917 * 0.03604 * 20 19 18 22 22 C 1.38111 * 119.98371 * 0.07167 * 21 20 19 23 23 C 1.38371 * 121.82751 * 342.78877 * 18 17 16 24 24 C 1.50764 * 121.40312 * 0.51318 * 23 18 17 25 25 H 0.97004 * 119.99690 * 359.97438 * 1 2 3 26 26 H 0.96996 * 120.00000 * 244.99902 * 12 9 7 27 27 H 1.08997 * 109.46738 * 45.00133 * 13 12 9 28 28 H 1.09004 * 109.46890 * 284.99911 * 13 12 9 29 29 H 1.09002 * 109.68600 * 295.31955 * 16 14 13 30 30 H 1.08999 * 109.68135 * 55.83785 * 16 14 13 31 31 H 1.07998 * 119.88947 * 359.59209 * 19 18 17 32 32 H 1.08001 * 120.02081 * 180.02562 * 20 19 18 33 33 H 1.08002 * 120.01048 * 180.02562 * 21 20 19 34 34 H 1.07999 * 119.83951 * 180.02562 * 22 21 20 35 35 H 1.09011 * 109.43170 * 222.08764 * 24 23 18 36 36 H 1.08997 * 109.44062 * 102.22075 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 16 1.1234 -2.7200 -0.0005 10 8 0.4507 -2.7950 -1.2500 11 8 0.4517 -2.7955 1.2494 12 7 2.2480 -3.9355 -0.0005 13 6 3.1391 -4.1090 1.1494 14 6 3.8043 -5.4849 1.0759 15 1 4.3180 -5.5947 0.1209 16 6 2.7414 -6.5815 1.2207 17 8 3.3748 -7.8496 1.0450 18 6 4.5106 -8.0942 1.7504 19 6 4.9410 -9.4112 1.8791 20 6 6.0939 -9.6994 2.5799 21 6 6.8248 -8.6774 3.1574 22 6 6.3994 -7.3693 3.0336 23 6 5.2422 -7.0739 2.3321 24 6 4.8081 -5.6343 2.2219 25 1 -0.4850 0.8401 0.0004 26 1 2.3168 -4.5326 -0.7618 27 1 2.5620 -4.0331 2.0709 28 1 3.9053 -3.3337 1.1355 29 1 2.2928 -6.5294 2.2127 30 1 1.9705 -6.4479 0.4618 31 1 4.3708 -10.2102 1.4287 32 1 6.4253 -10.7227 2.6775 33 1 7.7277 -8.9021 3.7058 34 1 6.9722 -6.5729 3.4852 35 1 5.6780 -5.0072 2.0263 36 1 4.3407 -5.3238 3.1564 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193000598.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:47 Heat of formation + Delta-G solvation = -117.384639 kcal Electronic energy + Delta-G solvation = -21568.788381 eV Core-core repulsion = 18143.861393 eV Total energy + Delta-G solvation = -3424.926989 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.78014 -37.71148 -36.09997 -35.18940 -33.98253 -33.26855 -33.00099 -30.44487 -30.30312 -26.17865 -25.84459 -25.43639 -22.83582 -21.97524 -19.97955 -18.95957 -17.90106 -17.46508 -16.65776 -16.19229 -16.02711 -15.37856 -14.96611 -14.77408 -14.75662 -14.16095 -13.97133 -13.71337 -13.41861 -13.27561 -13.09348 -12.75124 -12.29827 -12.01301 -11.74043 -11.47476 -11.32470 -11.22237 -11.02772 -10.77518 -10.64394 -10.48552 -10.31939 -10.25125 -10.22040 -9.26177 -9.07710 -8.92432 -8.54654 -8.24243 -6.72444 -5.34861 1.17644 1.30705 2.29897 3.06643 3.11427 3.16670 3.25722 3.63191 4.03534 4.44156 4.54640 4.58872 4.62770 4.74128 4.86177 4.94100 5.06743 5.15811 5.32073 5.36854 5.49572 5.57299 5.60266 5.70051 5.82028 5.85615 5.91924 6.06140 6.15930 6.17317 6.34054 6.38573 6.46781 6.65667 6.77121 7.29589 7.39207 7.82839 7.93877 8.86517 10.21823 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.030819 B = 0.003556 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.302542 B = 7872.283498 C = 8528.026825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.133 3.867 3 Si 0.921 3.079 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.264 1.264 7 C -1.022 5.022 8 H 0.101 0.899 9 S 2.716 3.284 10 O -1.006 7.006 11 O -1.006 7.006 12 N -1.140 6.140 13 C 0.135 3.865 14 C -0.132 4.132 15 H 0.091 0.909 16 C 0.063 3.937 17 O -0.316 6.316 18 C 0.133 3.867 19 C -0.152 4.152 20 C -0.092 4.092 21 C -0.157 4.157 22 C -0.085 4.085 23 C -0.155 4.155 24 C -0.075 4.075 25 H 0.292 0.708 26 H 0.402 0.598 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.114 0.886 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.086 0.914 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.795 -13.785 5.469 19.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.189 1.189 7 C -1.155 5.155 8 H 0.120 0.880 9 S 2.815 3.185 10 O -0.996 6.996 11 O -0.996 6.996 12 N -0.895 5.895 13 C 0.008 3.992 14 C -0.152 4.152 15 H 0.109 0.891 16 C -0.011 4.011 17 O -0.230 6.230 18 C 0.088 3.912 19 C -0.171 4.171 20 C -0.110 4.110 21 C -0.175 4.175 22 C -0.103 4.103 23 C -0.156 4.156 24 C -0.113 4.113 25 H 0.102 0.898 26 H 0.233 0.767 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.132 0.868 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.105 0.895 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.535 -13.829 5.511 18.833 hybrid contribution 1.136 1.193 -0.255 1.667 sum 12.672 -12.635 5.256 18.651 Atomic orbital electron populations 1.69885 1.06788 1.30866 1.39933 1.24744 0.94463 1.00828 0.88499 0.86200 0.79886 0.79718 0.79751 1.18878 1.20117 1.18863 1.30520 1.06042 1.11922 1.67060 0.88033 1.00388 0.72040 0.73219 0.72832 1.93381 1.73018 1.87604 1.45608 1.93358 1.72829 1.87505 1.45931 1.56054 1.55765 1.51323 1.26311 1.20994 0.93577 0.94751 0.89874 1.22067 0.96823 0.95980 1.00342 0.89107 1.23152 0.94455 0.79924 1.03617 1.86035 1.36871 1.37262 1.62797 1.18805 0.86810 0.93123 0.92467 1.20610 0.98972 0.94062 1.03415 1.20899 0.94143 0.99298 0.96657 1.20995 1.00975 0.92820 1.02717 1.20920 0.95101 0.96835 0.97447 1.19885 0.97411 0.95178 1.03126 1.20532 0.99454 0.92200 0.99087 0.89803 0.76686 0.90254 0.91398 0.91190 0.86796 0.85382 0.85671 0.86071 0.85802 0.89507 0.89707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.61 13.19 55.43 0.73 -23.88 16 2 C 0.13 3.65 5.46 -17.82 -0.10 3.55 16 3 Si 0.92 20.26 29.54 -169.99 -5.02 15.24 16 4 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 7 C -1.02 -27.43 9.72 30.60 0.30 -27.13 16 8 H 0.10 2.47 7.81 -52.49 -0.41 2.06 16 9 S 2.72 69.46 5.02 -107.50 -0.54 68.92 16 10 O -1.01 -28.85 18.02 -57.17 -1.03 -29.88 16 11 O -1.01 -28.37 17.49 -57.17 -1.00 -29.37 16 12 N -1.14 -21.02 5.49 -10.61 -0.06 -21.08 16 13 C 0.14 2.09 5.61 -4.04 -0.02 2.06 16 14 C -0.13 -1.66 2.45 -90.37 -0.22 -1.88 16 15 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 16 C 0.06 0.83 6.25 37.37 0.23 1.06 16 17 O -0.32 -4.33 10.28 -19.49 -0.20 -4.53 16 18 C 0.13 1.70 6.47 -39.19 -0.25 1.45 16 19 C -0.15 -1.69 9.94 -39.34 -0.39 -2.08 16 20 C -0.09 -0.86 10.04 -39.66 -0.40 -1.26 16 21 C -0.16 -1.44 10.04 -39.61 -0.40 -1.84 16 22 C -0.08 -0.85 9.67 -39.53 -0.38 -1.23 16 23 C -0.16 -1.81 5.75 -104.44 -0.60 -2.41 16 24 C -0.08 -0.83 5.19 -27.81 -0.14 -0.97 16 25 H 0.29 7.65 8.31 -40.82 -0.34 7.31 16 26 H 0.40 6.41 8.40 -34.46 -0.29 6.12 16 27 H 0.08 1.27 7.75 -51.93 -0.40 0.87 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.11 1.47 7.49 -51.93 -0.39 1.08 16 31 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.09 0.84 8.14 -51.92 -0.42 0.41 16 36 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 LS Contribution 319.57 15.07 4.82 4.82 Total: -1.00 -34.90 319.57 -9.11 -44.01 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -4.43 Total: 6.43 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: -2.38 Total: -30.68 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.67 Total: -44.96 kcal Atomic # 8 Polarization: -61.55 SS G_CDS: -2.23 Total: -63.78 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 69.46 SS G_CDS: -0.54 Total: 68.92 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.90 -9.11 -44.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193000598.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.379 kcal (2) G-P(sol) polarization free energy of solvation -34.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds