Wall clock time and date at job start Tue Mar 31 2020 03:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99365 * 2 1 4 4 H 1.48507 * 109.46977 * 269.99621 * 3 2 1 5 5 H 1.48494 * 109.47285 * 29.99745 * 3 2 1 6 6 H 1.48496 * 109.46907 * 150.00221 * 3 2 1 7 7 C 1.37876 * 120.00515 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99896 * 359.97438 * 7 2 1 9 9 S 1.76200 * 119.99953 * 180.02562 * 7 2 1 10 10 O 1.42104 * 106.39936 * 66.46298 * 9 7 2 11 11 O 1.42092 * 106.40236 * 293.54062 * 9 7 2 12 12 N 1.65595 * 107.21540 * 179.97438 * 9 7 2 13 13 C 1.46502 * 120.00087 * 65.00467 * 12 9 7 14 14 H 1.09002 * 110.28750 * 24.29387 * 13 12 9 15 15 C 1.54259 * 110.32097 * 262.17077 * 13 12 9 16 16 C 1.54380 * 105.05727 * 240.99980 * 15 13 12 17 17 N 1.48559 * 104.59665 * 23.85363 * 16 15 13 18 18 C 1.39000 * 110.99826 * 200.96035 * 17 16 15 19 19 C 1.39142 * 119.71030 * 59.60301 * 18 17 16 20 20 C 1.38297 * 119.09891 * 179.75196 * 19 18 17 21 21 C 1.38884 * 118.50369 * 0.50933 * 20 19 18 22 22 C 1.38019 * 119.33384 * 359.72943 * 21 20 19 23 23 N 1.31979 * 120.85420 * 0.02562 * 22 21 20 24 24 C 1.48561 * 104.21990 * 320.51451 * 17 16 15 25 25 H 0.96995 * 120.00866 * 0.02562 * 1 2 3 26 26 H 0.97004 * 120.00108 * 244.99954 * 12 9 7 27 27 H 1.08994 * 110.32531 * 359.89300 * 15 13 12 28 28 H 1.08992 * 110.32465 * 122.10538 * 15 13 12 29 29 H 1.09005 * 110.41464 * 142.63601 * 16 15 13 30 30 H 1.08997 * 110.41291 * 265.07229 * 16 15 13 31 31 H 1.08002 * 120.44859 * 359.97438 * 19 18 17 32 32 H 1.08000 * 120.74478 * 180.26498 * 20 19 18 33 33 H 1.08004 * 120.33073 * 179.71089 * 21 20 19 34 34 H 1.07996 * 119.57290 * 180.02562 * 22 21 20 35 35 H 1.08990 * 110.41371 * 280.70218 * 24 17 16 36 36 H 1.09004 * 110.40913 * 158.26121 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4002 5 1 1.4463 2.6527 0.6999 6 1 3.5465 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 16 3.7666 -1.1938 0.0012 10 8 4.1673 -0.6491 1.2511 11 8 4.1683 -0.6496 -1.2484 12 7 4.2569 -2.7755 0.0025 13 6 3.9621 -3.6347 -1.1470 14 1 3.8235 -3.0313 -2.0441 15 6 2.7037 -4.4836 -0.8725 16 6 3.1853 -5.9487 -0.9422 17 7 4.6397 -5.8792 -0.6479 18 6 5.2982 -7.0082 -1.1210 19 6 5.2567 -7.3128 -2.4781 20 6 5.9206 -8.4363 -2.9358 21 6 6.5976 -9.2268 -2.0162 22 6 6.5931 -8.8681 -0.6834 23 7 5.9549 -7.7873 -0.2755 24 6 5.0981 -4.6583 -1.3595 25 1 -0.4851 0.8399 -0.0004 26 1 4.7393 -3.1332 0.7643 27 1 2.3065 -4.2625 0.1180 28 1 1.9475 -4.2970 -1.6349 29 1 2.6742 -6.5530 -0.1927 30 1 3.0182 -6.3568 -1.9391 31 1 4.7163 -6.6784 -3.1651 32 1 5.9095 -8.6953 -3.9843 33 1 7.1221 -10.1134 -2.3407 34 1 7.1186 -9.4797 0.0349 35 1 5.2304 -4.8643 -2.4215 36 1 6.0273 -4.2908 -0.9239 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193000817.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:44 Heat of formation + Delta-G solvation = -47.145490 kcal Electronic energy + Delta-G solvation = -21872.939059 eV Core-core repulsion = 18483.350619 eV Total energy + Delta-G solvation = -3389.588439 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.093 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.67815 -39.59045 -37.64364 -36.46261 -35.61487 -35.14193 -33.41534 -32.20152 -29.92585 -28.85389 -28.46757 -24.73802 -24.05745 -22.10066 -21.92861 -21.02640 -19.52881 -18.78370 -18.36264 -17.49823 -17.39408 -17.01469 -16.75133 -15.94167 -15.67317 -15.57290 -15.37768 -14.96253 -14.72238 -14.46812 -14.15376 -13.85654 -13.45719 -13.39401 -13.34901 -13.08575 -12.79784 -12.68677 -12.63717 -12.54566 -12.29329 -11.90356 -11.70103 -11.30102 -11.15268 -10.82709 -10.74954 -10.29210 -9.85463 -9.45195 -8.92227 -7.46614 0.07069 0.18564 0.37963 1.07396 1.16150 1.24343 1.91915 2.45907 2.53615 2.58909 2.78415 3.35033 3.46000 3.80484 3.83590 3.94524 4.05575 4.14209 4.18254 4.23838 4.28223 4.38311 4.43247 4.50663 4.67155 4.76130 4.83138 4.91219 5.12135 5.17493 5.25643 5.27775 5.43616 5.59166 5.68667 6.10049 6.15047 6.31318 6.59291 7.18454 8.24645 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.038076 B = 0.003777 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.194781 B = 7412.133347 C = 7638.514507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.112 3.888 3 Si 0.820 3.180 4 H -0.238 1.238 5 H -0.224 1.224 6 H -0.233 1.233 7 C -1.031 5.031 8 H 0.117 0.883 9 S 2.695 3.305 10 O -1.034 7.034 11 O -1.029 7.029 12 N -1.100 6.100 13 C 0.148 3.852 14 H 0.103 0.897 15 C -0.143 4.143 16 C 0.053 3.947 17 N -0.490 5.490 18 C 0.276 3.724 19 C -0.207 4.207 20 C -0.065 4.065 21 C -0.172 4.172 22 C 0.094 3.906 23 N -0.508 5.508 24 C 0.045 3.955 25 H 0.290 0.710 26 H 0.419 0.581 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.148 0.852 32 H 0.166 0.834 33 H 0.170 0.830 34 H 0.179 0.821 35 H 0.086 0.914 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.956 -18.501 -7.979 22.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.105 4.105 3 Si 0.638 3.362 4 H -0.161 1.161 5 H -0.146 1.146 6 H -0.155 1.155 7 C -1.164 5.164 8 H 0.135 0.865 9 S 2.796 3.204 10 O -1.024 7.024 11 O -1.019 7.019 12 N -0.859 5.859 13 C 0.039 3.961 14 H 0.121 0.879 15 C -0.183 4.183 16 C -0.073 4.073 17 N -0.214 5.214 18 C 0.046 3.954 19 C -0.230 4.230 20 C -0.091 4.091 21 C -0.192 4.192 22 C -0.063 4.063 23 N -0.218 5.218 24 C -0.084 4.084 25 H 0.100 0.900 26 H 0.254 0.746 27 H 0.090 0.910 28 H 0.110 0.890 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.165 0.835 32 H 0.183 0.817 33 H 0.187 0.813 34 H 0.195 0.805 35 H 0.104 0.896 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.376 -17.345 -6.658 21.280 hybrid contribution -0.732 0.179 -0.974 1.232 sum 9.644 -17.166 -7.632 21.117 Atomic orbital electron populations 1.70001 1.07303 1.30285 1.40646 1.25079 0.95522 1.01141 0.88726 0.87560 0.82825 0.83310 0.82512 1.16144 1.14624 1.15526 1.30978 1.17583 1.01973 1.65913 0.86521 1.00555 0.76023 0.71579 0.72291 1.93437 1.85412 1.77556 1.46013 1.93372 1.84817 1.77480 1.46202 1.55098 1.73357 1.29473 1.27955 1.21557 0.94524 0.91629 0.88357 0.87937 1.22940 0.97682 0.93811 1.03880 1.23181 0.85762 0.97000 1.01398 1.62150 1.04058 1.00347 1.54796 1.19958 0.94590 0.92062 0.88762 1.22741 1.03057 1.00554 0.96658 1.21923 0.92941 0.92321 1.01895 1.22548 1.00679 1.02082 0.93845 1.23195 0.94915 0.92070 0.96108 1.67265 1.08348 1.05737 1.40479 1.23495 0.98183 0.88206 0.98467 0.89977 0.74597 0.90973 0.89004 0.89857 0.90898 0.83475 0.81691 0.81294 0.80452 0.89624 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.63 13.96 21.45 0.30 -48.33 16 2 C 0.11 6.36 5.47 84.65 0.46 6.82 16 3 Si 0.82 40.99 26.54 68.60 1.82 42.81 16 4 H -0.24 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.22 -9.96 7.11 99.48 0.71 -9.25 16 6 H -0.23 -12.07 5.61 99.48 0.56 -11.51 16 7 C -1.03 -56.55 10.26 67.73 0.69 -55.86 16 8 H 0.12 6.40 7.33 -2.91 -0.02 6.38 16 9 S 2.70 132.45 4.22 -56.49 -0.24 132.21 16 10 O -1.03 -55.82 16.02 -128.00 -2.05 -57.87 16 11 O -1.03 -53.29 16.21 -128.00 -2.07 -55.36 16 12 N -1.10 -41.44 5.39 -165.66 -0.89 -42.34 16 13 C 0.15 4.67 3.72 45.89 0.17 4.84 16 14 H 0.10 3.30 7.56 -2.39 -0.02 3.28 16 15 C -0.14 -4.22 6.41 31.49 0.20 -4.02 16 16 C 0.05 1.30 6.35 86.45 0.55 1.85 16 17 N -0.49 -13.24 5.47 -687.91 -3.76 -17.00 16 18 C 0.28 6.80 5.91 133.07 0.79 7.59 16 19 C -0.21 -3.75 8.04 22.50 0.18 -3.57 16 20 C -0.06 -0.84 10.17 22.44 0.23 -0.61 16 21 C -0.17 -2.11 10.10 22.37 0.23 -1.88 16 22 C 0.09 1.66 11.17 84.62 0.95 2.61 16 23 N -0.51 -13.18 10.40 -193.26 -2.01 -15.19 16 24 C 0.04 1.17 5.99 86.45 0.52 1.68 16 25 H 0.29 14.97 8.31 -92.71 -0.77 14.20 16 26 H 0.42 14.39 8.86 -96.74 -0.86 13.54 16 27 H 0.07 2.43 7.61 -2.39 -0.02 2.41 16 28 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 30 H 0.07 1.43 6.72 -2.39 -0.02 1.42 16 31 H 0.15 2.19 6.73 -2.91 -0.02 2.17 16 32 H 0.17 1.05 8.06 -2.91 -0.02 1.02 16 33 H 0.17 0.85 8.06 -2.91 -0.02 0.82 16 34 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 35 H 0.09 1.78 6.47 -2.39 -0.02 1.76 16 36 H 0.09 2.41 8.06 -2.38 -0.02 2.39 16 Total: -1.00 -73.27 309.70 -3.84 -77.11 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 0.11 Total: 24.50 kcal Atomic # 6 Polarization: -45.51 SS G_CDS: 4.96 Total: -40.54 kcal Atomic # 7 Polarization: -116.49 SS G_CDS: -6.37 Total: -122.86 kcal Atomic # 8 Polarization: -109.11 SS G_CDS: -4.12 Total: -113.23 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 1.82 Total: 42.81 kcal Atomic # 16 Polarization: 132.45 SS G_CDS: -0.24 Total: 132.21 kcal Total: -73.27 -3.84 -77.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193000817.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.967 kcal (2) G-P(sol) polarization free energy of solvation -73.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds