Wall clock time and date at job start Tue Mar 31 2020 03:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00375 * 2 1 4 4 H 1.48500 * 109.47120 * 274.32271 * 3 2 1 5 5 H 1.48500 * 109.46849 * 34.32297 * 3 2 1 6 6 H 1.48496 * 109.47119 * 154.32303 * 3 2 1 7 7 C 1.37881 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99896 * 6.96206 * 7 2 1 9 9 S 1.76201 * 120.00224 * 186.96534 * 7 2 1 10 10 O 1.42110 * 106.40231 * 64.83443 * 9 7 2 11 11 O 1.42099 * 106.40045 * 291.91841 * 9 7 2 12 12 N 1.65600 * 107.22001 * 178.37627 * 9 7 2 13 13 C 1.46504 * 119.99425 * 60.90203 * 12 9 7 14 14 C 1.52995 * 115.55637 * 30.02557 * 13 12 9 15 15 C 1.50693 * 109.47168 * 199.64067 * 14 13 12 16 16 C 1.38266 * 119.94298 * 272.21102 * 15 14 13 17 17 C 1.38149 * 120.05618 * 179.73056 * 16 15 14 18 18 C 1.38739 * 119.94164 * 0.54073 * 17 16 15 19 19 O 1.35896 * 120.05043 * 179.75207 * 18 17 16 20 20 C 1.38728 * 119.88668 * 359.72847 * 18 17 16 21 21 C 1.38144 * 119.94693 * 0.02562 * 20 18 17 22 22 C 1.53003 * 117.49496 * 175.69963 * 13 12 9 23 23 C 1.52994 * 60.03573 * 107.47288 * 22 13 12 24 24 H 0.97001 * 119.99603 * 0.02562 * 1 2 3 25 25 H 0.96991 * 119.99907 * 240.89522 * 12 9 7 26 26 H 1.09006 * 109.46766 * 319.63730 * 14 13 12 27 27 H 1.08996 * 109.47154 * 79.63893 * 14 13 12 28 28 H 1.07999 * 119.97222 * 359.97438 * 16 15 14 29 29 H 1.08002 * 120.03157 * 180.27297 * 17 16 15 30 30 H 0.96705 * 114.00093 * 274.94164 * 19 18 17 31 31 H 1.08004 * 120.02680 * 179.97438 * 20 18 17 32 32 H 1.08002 * 119.97377 * 180.02562 * 21 20 18 33 33 H 1.09000 * 117.49573 * 214.97887 * 22 13 12 34 34 H 1.09005 * 117.49979 * 359.96811 * 22 13 12 35 35 H 1.09001 * 117.50119 * 107.49525 * 23 22 13 36 36 H 1.09005 * 117.50332 * 252.52530 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4054 2.0991 -1.3961 5 1 1.4954 2.6245 0.7895 6 1 3.5895 1.4154 0.6066 7 6 2.0045 -1.1941 0.0005 8 1 1.4705 -2.1259 -0.1124 9 16 3.7568 -1.1998 0.1856 10 8 4.0245 -0.6967 1.4874 11 8 4.2870 -0.6170 -0.9970 12 7 4.2446 -2.7823 0.1864 13 6 3.9907 -3.6275 -0.9830 14 6 3.9589 -2.9002 -2.3287 15 6 3.2353 -3.7494 -3.3416 16 6 3.9322 -4.6894 -4.0781 17 6 3.2702 -5.4730 -5.0034 18 6 1.9069 -5.3084 -5.2013 19 8 1.2544 -6.0746 -6.1145 20 6 1.2110 -4.3607 -4.4650 21 6 1.8767 -3.5831 -3.5373 22 6 4.5536 -5.0501 -0.9619 23 6 3.0495 -4.8210 -0.8012 24 1 -0.4849 0.8401 -0.0004 25 1 4.6984 -3.1495 0.9610 26 1 3.4396 -1.9485 -2.2151 27 1 4.9787 -2.7195 -2.6682 28 1 4.9943 -4.8139 -3.9271 29 1 3.8142 -6.2102 -5.5754 30 1 1.2936 -5.7298 -7.0172 31 1 0.1497 -4.2304 -4.6175 32 1 1.3353 -2.8455 -2.9636 33 1 4.9010 -5.4678 -1.9069 34 1 5.1133 -5.3569 -0.0783 35 1 2.4072 -5.0881 -1.6405 36 1 2.6195 -4.9767 0.1882 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193005548.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:06 Heat of formation + Delta-G solvation = -94.951967 kcal Electronic energy + Delta-G solvation = -22434.706381 eV Core-core repulsion = 19010.752146 eV Total energy + Delta-G solvation = -3423.954235 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.06601 -39.38589 -37.67882 -37.31255 -36.50391 -35.17860 -33.09154 -32.06475 -31.88637 -28.56069 -27.59046 -23.96664 -23.13066 -22.83700 -21.45569 -20.63960 -19.39265 -19.26474 -18.59228 -17.67765 -16.98739 -16.63459 -16.59843 -16.16252 -15.99491 -15.56568 -15.43185 -14.99104 -14.63911 -14.35719 -13.87200 -13.83256 -13.44954 -13.36935 -13.14100 -12.90349 -12.74805 -12.69615 -12.60227 -12.35106 -12.14239 -12.04178 -11.85868 -11.37651 -11.31986 -11.11365 -10.99330 -9.87608 -9.80194 -9.34516 -8.94888 -7.48253 0.13039 0.30062 0.45094 1.05424 1.12234 1.18585 1.87269 2.41226 2.48567 2.72723 2.89664 3.28502 3.36587 3.73012 3.82710 3.96201 4.05878 4.10549 4.13117 4.22337 4.44055 4.52456 4.59041 4.81004 4.88930 4.96152 5.07802 5.15747 5.22303 5.29578 5.31784 5.39663 5.46534 5.51089 5.77377 5.96362 6.06929 6.27732 6.56083 6.91546 8.22577 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.019429 B = 0.005723 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.811577 B = 4891.027550 C = 5684.822477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.112 3.888 3 Si 0.841 3.159 4 H -0.235 1.235 5 H -0.229 1.229 6 H -0.248 1.248 7 C -1.026 5.026 8 H 0.108 0.892 9 S 2.697 3.303 10 O -1.037 7.037 11 O -1.019 7.019 12 N -1.079 6.079 13 C 0.100 3.900 14 C -0.075 4.075 15 C -0.083 4.083 16 C -0.095 4.095 17 C -0.141 4.141 18 C 0.098 3.902 19 O -0.508 6.508 20 C -0.152 4.152 21 C -0.110 4.110 22 C -0.143 4.143 23 C -0.197 4.197 24 H 0.290 0.710 25 H 0.421 0.579 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.154 0.846 29 H 0.155 0.845 30 H 0.409 0.591 31 H 0.129 0.871 32 H 0.106 0.894 33 H 0.125 0.875 34 H 0.116 0.884 35 H 0.100 0.900 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.035 -11.677 -10.218 17.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.105 4.105 3 Si 0.659 3.341 4 H -0.159 1.159 5 H -0.152 1.152 6 H -0.172 1.172 7 C -1.159 5.159 8 H 0.126 0.874 9 S 2.797 3.203 10 O -1.027 7.027 11 O -1.008 7.008 12 N -0.836 5.836 13 C 0.010 3.990 14 C -0.113 4.113 15 C -0.083 4.083 16 C -0.112 4.112 17 C -0.160 4.160 18 C 0.053 3.947 19 O -0.321 6.321 20 C -0.170 4.170 21 C -0.128 4.128 22 C -0.182 4.182 23 C -0.236 4.236 24 H 0.100 0.900 25 H 0.256 0.744 26 H 0.097 0.903 27 H 0.115 0.885 28 H 0.172 0.828 29 H 0.173 0.827 30 H 0.268 0.732 31 H 0.147 0.853 32 H 0.124 0.876 33 H 0.143 0.857 34 H 0.134 0.866 35 H 0.118 0.882 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.215 -11.094 -9.791 16.462 hybrid contribution -0.798 0.883 0.271 1.220 sum 6.417 -10.211 -9.519 15.364 Atomic orbital electron populations 1.70026 1.07352 1.30267 1.40310 1.25089 0.95502 1.01109 0.88778 0.87271 0.81461 0.83051 0.82276 1.15855 1.15173 1.17186 1.30816 1.17920 1.01825 1.65371 0.87399 1.00566 0.76072 0.71323 0.72301 1.93415 1.87839 1.78811 1.42681 1.93382 1.81389 1.76443 1.49619 1.54526 1.74694 1.29920 1.24426 1.20373 1.06947 0.86455 0.85203 1.20607 1.02362 0.98126 0.90245 1.19677 0.93571 0.97599 0.97491 1.21186 1.01066 0.94116 0.94877 1.21635 0.93267 1.00788 1.00264 1.18520 0.90743 0.91706 0.93686 1.84765 1.75852 1.49978 1.21551 1.21446 1.00935 0.96165 0.98483 1.21082 0.94688 0.99253 0.97818 1.23521 0.95279 0.93967 1.05399 1.23610 0.94370 1.02227 1.03409 0.89956 0.74366 0.90286 0.88484 0.82827 0.82714 0.73212 0.85346 0.87588 0.85689 0.86614 0.88159 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.61 13.96 21.45 0.30 -48.31 16 2 C 0.11 6.37 5.47 84.66 0.46 6.83 16 3 Si 0.84 41.89 26.54 68.60 1.82 43.71 16 4 H -0.24 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.23 -10.24 7.11 99.48 0.71 -9.53 16 6 H -0.25 -12.86 5.69 99.48 0.57 -12.30 16 7 C -1.03 -56.87 9.78 67.74 0.66 -56.21 16 8 H 0.11 6.17 8.06 -2.91 -0.02 6.14 16 9 S 2.70 132.98 3.68 -56.49 -0.21 132.77 16 10 O -1.04 -56.06 16.41 -128.00 -2.10 -58.16 16 11 O -1.02 -51.74 13.61 -128.00 -1.74 -53.48 16 12 N -1.08 -40.53 6.07 -152.10 -0.92 -41.46 16 13 C 0.10 3.30 3.06 3.63 0.01 3.31 16 14 C -0.08 -2.62 4.58 29.84 0.14 -2.48 16 15 C -0.08 -2.46 3.35 -19.85 -0.07 -2.53 16 16 C -0.09 -2.09 8.32 22.26 0.19 -1.91 16 17 C -0.14 -2.84 9.99 22.37 0.22 -2.61 16 18 C 0.10 2.28 6.70 22.51 0.15 2.43 16 19 O -0.51 -9.91 13.50 -92.38 -1.25 -11.16 16 20 C -0.15 -4.23 9.99 22.36 0.22 -4.01 16 21 C -0.11 -3.59 8.68 22.25 0.19 -3.40 16 22 C -0.14 -3.34 9.79 30.59 0.30 -3.04 16 23 C -0.20 -5.91 9.64 30.62 0.30 -5.61 16 24 H 0.29 15.00 8.31 -92.71 -0.77 14.23 16 25 H 0.42 13.20 8.91 -96.76 -0.86 12.33 16 26 H 0.08 3.41 5.02 -2.38 -0.01 3.40 16 27 H 0.10 3.03 8.10 -2.39 -0.02 3.01 16 28 H 0.15 2.51 7.53 -2.91 -0.02 2.49 16 29 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 30 H 0.41 3.81 9.06 -74.05 -0.67 3.14 16 31 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 32 H 0.11 4.09 8.06 -2.91 -0.02 4.06 16 33 H 0.13 2.32 6.22 -2.39 -0.01 2.30 16 34 H 0.12 2.24 8.14 -2.38 -0.02 2.22 16 35 H 0.10 3.06 5.87 -2.39 -0.01 3.05 16 36 H 0.09 2.81 8.14 -2.38 -0.02 2.79 16 Total: -1.00 -71.01 310.55 -1.86 -72.87 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: -0.54 Total: 32.45 kcal Atomic # 6 Polarization: -72.00 SS G_CDS: 2.78 Total: -69.23 kcal Atomic # 7 Polarization: -89.15 SS G_CDS: -0.62 Total: -89.77 kcal Atomic # 8 Polarization: -117.71 SS G_CDS: -5.09 Total: -122.80 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.82 Total: 43.71 kcal Atomic # 16 Polarization: 132.98 SS G_CDS: -0.21 Total: 132.77 kcal Total: -71.01 -1.86 -72.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193005548.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.082 kcal (2) G-P(sol) polarization free energy of solvation -71.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds