Wall clock time and date at job start Tue Mar 31 2020 03:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34223 * 116.99710 * 2 1 4 4 O 1.20823 * 120.00652 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99805 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.47205 * 179.97438 * 5 3 2 7 7 C 1.36844 * 119.99838 * 269.02120 * 6 5 3 8 8 H 1.08005 * 119.99701 * 128.44697 * 7 6 5 9 9 C 1.39047 * 120.00172 * 308.44313 * 7 6 5 10 10 N 1.31363 * 120.00341 * 351.61117 * 9 7 6 11 11 Si 1.86803 * 119.99822 * 171.61539 * 9 7 6 12 12 H 1.48499 * 109.46922 * 90.00064 * 11 9 7 13 13 H 1.48503 * 109.46840 * 209.99838 * 11 9 7 14 14 H 1.48496 * 109.47308 * 329.99954 * 11 9 7 15 15 C 1.34780 * 119.99902 * 89.02215 * 6 5 3 16 16 O 1.21668 * 119.99986 * 3.67219 * 15 6 5 17 17 C 1.47071 * 120.00197 * 183.39774 * 15 6 5 18 18 C 1.37110 * 126.65564 * 173.09288 * 17 15 6 19 19 C 1.40932 * 105.45667 * 179.97438 * 18 17 15 20 20 C 1.47638 * 126.26776 * 179.97438 * 19 18 17 21 21 O 1.21486 * 120.00155 * 359.97438 * 20 19 18 22 22 O 1.34717 * 120.00028 * 180.02562 * 20 19 18 23 23 N 1.31997 * 107.46061 * 359.97438 * 19 18 17 24 24 N 1.28456 * 110.51399 * 359.71396 * 23 19 18 25 25 H 0.96997 * 125.06292 * 180.27657 * 24 23 19 26 26 H 1.08994 * 109.47651 * 300.00332 * 1 2 3 27 27 H 1.08999 * 109.47015 * 60.00564 * 1 2 3 28 28 H 1.09005 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46743 * 59.99887 * 5 3 2 30 30 H 1.09000 * 109.46996 * 299.99941 * 5 3 2 31 31 H 0.96992 * 120.00473 * 179.97438 * 10 9 7 32 32 H 1.08008 * 127.26916 * 0.03226 * 18 17 15 33 33 H 0.96700 * 117.00441 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.1956 3.3293 -1.1854 8 1 3.7155 4.2780 -1.3756 9 6 5.0310 2.7682 -2.1449 10 7 5.7427 1.7030 -1.8542 11 14 5.1413 3.5292 -3.8474 12 1 6.2196 4.5501 -3.8642 13 1 5.4459 2.4709 -4.8437 14 1 3.8463 4.1713 -4.1875 15 6 4.1531 3.3324 1.1666 16 8 4.0282 2.7374 2.2205 17 6 4.4972 4.7623 1.1657 18 6 4.5730 5.5866 2.2587 19 6 4.9345 6.8508 1.7513 20 6 5.1419 8.0816 2.5399 21 8 5.0005 8.0612 3.7463 22 8 5.4870 9.2276 1.9215 23 7 5.0538 6.7328 0.4421 24 7 4.8109 5.5260 0.0749 25 1 4.8420 5.2049 -0.8399 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.9563 0.7805 -0.8892 30 1 3.9556 0.7809 0.8908 31 1 6.3252 1.3114 -2.5236 32 1 4.3943 5.3226 3.2906 33 1 5.6115 10.0074 2.4796 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604326317.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:00 Heat of formation + Delta-G solvation = -119.970994 kcal Electronic energy + Delta-G solvation = -24042.343410 eV Core-core repulsion = 20071.011054 eV Total energy + Delta-G solvation = -3971.332356 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.17811 -39.96527 -39.62318 -38.43923 -35.96363 -35.89046 -35.18161 -32.15042 -31.57779 -30.66314 -28.72193 -26.68958 -25.50377 -24.61392 -22.52191 -20.75317 -20.30779 -19.91353 -18.83235 -17.82254 -17.15643 -16.83459 -16.31862 -15.91450 -15.76542 -15.56806 -15.27552 -14.94753 -14.68445 -14.38181 -13.62252 -13.26076 -13.20650 -12.97117 -12.91270 -12.72557 -11.99791 -11.66154 -11.54195 -11.48140 -11.42811 -11.09217 -10.78434 -10.69192 -10.61605 -10.37786 -9.93117 -9.65513 -9.18135 -9.09728 -8.72556 -7.95705 -6.92589 -4.89361 1.62701 1.95188 2.81419 2.88335 2.92371 2.95168 2.99590 3.12157 3.42893 3.56677 3.67172 4.06168 4.32493 4.53917 4.87833 5.34819 5.41362 5.43493 5.47447 5.73868 5.78148 5.88948 6.05130 6.18011 6.43742 6.55383 6.67206 6.79604 6.85732 7.33381 7.46200 7.69997 8.01878 8.30117 8.38071 8.47082 8.86752 9.31088 10.09092 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.013896 B = 0.005590 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.516839 B = 5007.686935 C = 6406.986389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.367 6.367 3 C 0.445 3.555 4 O -0.504 6.504 5 C 0.130 3.870 6 N -0.419 5.419 7 C -0.377 4.377 8 H 0.089 0.911 9 C 0.060 3.940 10 N -0.837 5.837 11 Si 0.910 3.090 12 H -0.265 1.265 13 H -0.271 1.271 14 H -0.260 1.260 15 C 0.565 3.435 16 O -0.570 6.570 17 C 0.016 3.984 18 C -0.124 4.124 19 C -0.034 4.034 20 C 0.581 3.419 21 O -0.514 6.514 22 O -0.503 6.503 23 N -0.230 5.230 24 N -0.330 5.330 25 H 0.459 0.541 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.137 0.863 30 H 0.108 0.892 31 H 0.283 0.717 32 H 0.169 0.831 33 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.157 2.122 -0.824 3.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.284 6.284 3 C 0.286 3.714 4 O -0.390 6.390 5 C 0.005 3.995 6 N -0.139 5.139 7 C -0.505 4.505 8 H 0.107 0.893 9 C -0.153 4.153 10 N -0.468 5.468 11 Si 0.733 3.267 12 H -0.190 1.190 13 H -0.195 1.195 14 H -0.184 1.184 15 C 0.353 3.647 16 O -0.451 6.451 17 C -0.111 4.111 18 C -0.153 4.153 19 C -0.188 4.188 20 C 0.423 3.577 21 O -0.401 6.401 22 O -0.313 6.313 23 N -0.073 5.073 24 N -0.064 5.064 25 H 0.321 0.679 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.112 0.888 29 H 0.154 0.846 30 H 0.126 0.874 31 H 0.094 0.906 32 H 0.186 0.814 33 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -2.148 2.193 -1.225 3.305 hybrid contribution -0.331 0.203 -0.443 0.589 sum -2.480 2.396 -1.668 3.830 Atomic orbital electron populations 1.23117 0.77806 1.02782 1.02092 1.86539 1.22418 1.34580 1.84830 1.25208 0.93493 0.80990 0.71675 1.90597 1.67034 1.36404 1.44939 1.20974 0.84338 0.87205 1.06966 1.42632 1.57712 1.08914 1.04612 1.19254 1.29350 1.07400 0.94522 0.89350 1.25751 0.93074 0.96022 1.00451 1.69750 1.21846 1.19687 1.35565 0.86163 0.79910 0.79739 0.80841 1.18970 1.19549 1.18409 1.17236 0.79076 0.84029 0.84336 1.90719 1.55847 1.67068 1.31500 1.21399 1.08145 0.94339 0.87233 1.21652 1.04053 0.89739 0.99861 1.20341 1.14942 0.93060 0.90476 1.19296 0.71984 0.81815 0.84613 1.90892 1.48828 1.85546 1.14811 1.84670 1.81326 1.20093 1.45219 1.73572 1.16108 1.03442 1.14132 1.45845 1.44360 1.03914 1.12295 0.67888 0.92396 0.92415 0.88766 0.84559 0.87436 0.90619 0.81393 0.73257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.56 16 2 O -0.37 -6.52 10.57 -39.24 -0.41 -6.93 16 3 C 0.44 9.31 8.02 36.01 0.29 9.60 16 4 O -0.50 -11.79 16.18 -18.75 -0.30 -12.10 16 5 C 0.13 2.79 5.57 -5.19 -0.03 2.76 16 6 N -0.42 -9.68 1.90 -117.44 -0.22 -9.90 16 7 C -0.38 -8.40 6.68 -15.02 -0.10 -8.50 16 8 H 0.09 1.92 5.98 -52.48 -0.31 1.61 16 9 C 0.06 1.28 5.15 -17.45 -0.09 1.19 16 10 N -0.84 -18.72 11.76 55.50 0.65 -18.07 16 11 Si 0.91 16.52 29.56 -169.99 -5.03 11.50 16 12 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 13 H -0.27 -4.93 7.11 56.52 0.40 -4.52 16 14 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 15 C 0.57 13.39 7.61 -12.68 -0.10 13.30 16 16 O -0.57 -14.38 16.48 5.22 0.09 -14.29 16 17 C 0.02 0.35 6.80 -82.48 -0.56 -0.21 16 18 C -0.12 -2.49 10.56 -38.97 -0.41 -2.90 16 19 C -0.03 -0.65 7.13 -82.94 -0.59 -1.24 16 20 C 0.58 9.61 8.34 34.57 0.29 9.90 16 21 O -0.51 -9.29 17.70 -19.26 -0.34 -9.63 16 22 O -0.50 -6.51 13.44 -40.54 -0.54 -7.05 16 23 N -0.23 -4.42 12.22 33.32 0.41 -4.01 16 24 N -0.33 -6.59 6.23 33.25 0.21 -6.39 16 25 H 0.46 8.87 5.11 -190.45 -0.97 7.90 16 26 H 0.06 0.80 8.13 -51.93 -0.42 0.37 16 27 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 28 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.14 2.91 6.15 -51.93 -0.32 2.59 16 30 H 0.11 2.25 7.40 -51.93 -0.38 1.86 16 31 H 0.28 5.92 8.31 -40.82 -0.34 5.58 16 32 H 0.17 3.19 8.06 -52.48 -0.42 2.77 16 33 H 0.41 2.92 9.11 45.56 0.42 3.33 16 LS Contribution 308.30 15.07 4.65 4.65 Total: -1.00 -29.61 308.30 -3.49 -33.10 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -2.40 Total: 13.67 kcal Atomic # 6 Polarization: 25.70 SS G_CDS: -0.24 Total: 25.46 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 1.04 Total: -38.36 kcal Atomic # 8 Polarization: -48.50 SS G_CDS: -1.52 Total: -50.01 kcal Atomic # 14 Polarization: 16.52 SS G_CDS: -5.03 Total: 11.50 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.61 -3.49 -33.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604326317.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.869 kcal (2) G-P(sol) polarization free energy of solvation -29.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds