Wall clock time and date at job start Tue Mar 31 2020 03:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34223 * 116.99710 * 2 1 4 4 O 1.20823 * 120.00652 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99805 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.47205 * 179.97438 * 5 3 2 7 7 C 1.36844 * 119.99838 * 269.02120 * 6 5 3 8 8 H 1.08005 * 119.99701 * 128.44697 * 7 6 5 9 9 C 1.39047 * 120.00172 * 308.44313 * 7 6 5 10 10 N 1.31363 * 120.00341 * 351.61117 * 9 7 6 11 11 Si 1.86803 * 119.99822 * 171.61539 * 9 7 6 12 12 H 1.48499 * 109.46922 * 90.00064 * 11 9 7 13 13 H 1.48503 * 109.46840 * 209.99838 * 11 9 7 14 14 H 1.48496 * 109.47308 * 329.99954 * 11 9 7 15 15 C 1.34780 * 119.99902 * 89.02215 * 6 5 3 16 16 O 1.21668 * 119.99986 * 3.67219 * 15 6 5 17 17 C 1.47071 * 120.00197 * 183.39774 * 15 6 5 18 18 C 1.37110 * 126.65564 * 173.09288 * 17 15 6 19 19 C 1.40932 * 105.45667 * 179.97438 * 18 17 15 20 20 C 1.47638 * 126.26776 * 179.97438 * 19 18 17 21 21 O 1.21486 * 120.00155 * 359.97438 * 20 19 18 22 22 O 1.34717 * 120.00028 * 180.02562 * 20 19 18 23 23 N 1.31997 * 107.46061 * 359.97438 * 19 18 17 24 24 N 1.28456 * 110.51399 * 359.71396 * 23 19 18 25 25 H 0.96997 * 125.06292 * 180.27657 * 24 23 19 26 26 H 1.08994 * 109.47651 * 300.00332 * 1 2 3 27 27 H 1.08999 * 109.47015 * 60.00564 * 1 2 3 28 28 H 1.09005 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46743 * 59.99887 * 5 3 2 30 30 H 1.09000 * 109.46996 * 299.99941 * 5 3 2 31 31 H 0.96992 * 120.00473 * 179.97438 * 10 9 7 32 32 H 1.08008 * 127.26916 * 0.03226 * 18 17 15 33 33 H 0.96700 * 117.00441 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.1956 3.3293 -1.1854 8 1 3.7155 4.2780 -1.3756 9 6 5.0310 2.7682 -2.1449 10 7 5.7427 1.7030 -1.8542 11 14 5.1413 3.5292 -3.8474 12 1 6.2196 4.5501 -3.8642 13 1 5.4459 2.4709 -4.8437 14 1 3.8463 4.1713 -4.1875 15 6 4.1531 3.3324 1.1666 16 8 4.0282 2.7374 2.2205 17 6 4.4972 4.7623 1.1657 18 6 4.5730 5.5866 2.2587 19 6 4.9345 6.8508 1.7513 20 6 5.1419 8.0816 2.5399 21 8 5.0005 8.0612 3.7463 22 8 5.4870 9.2276 1.9215 23 7 5.0538 6.7328 0.4421 24 7 4.8109 5.5260 0.0749 25 1 4.8420 5.2049 -0.8399 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.9563 0.7805 -0.8892 30 1 3.9556 0.7809 0.8908 31 1 6.3252 1.3114 -2.5236 32 1 4.3943 5.3226 3.2906 33 1 5.6115 10.0074 2.4796 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604326317.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:59 Heat of formation + Delta-G solvation = -140.798688 kcal Electronic energy + Delta-G solvation = -24043.246567 eV Core-core repulsion = 20071.011054 eV Total energy + Delta-G solvation = -3972.235512 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 297.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.74053 -41.58398 -40.90777 -40.14456 -37.58017 -37.09552 -36.90168 -33.86135 -33.12703 -32.28192 -30.26114 -28.05672 -27.18831 -26.02007 -24.15045 -22.29854 -21.81948 -21.48652 -20.49072 -19.11628 -18.76432 -18.40364 -17.78970 -17.40957 -17.21971 -17.18001 -16.82155 -16.65707 -16.14288 -15.91439 -15.21883 -14.78279 -14.70702 -14.44511 -14.32710 -14.27306 -13.56426 -13.22471 -13.07556 -12.93909 -12.68314 -12.60524 -12.32472 -12.13761 -11.99197 -11.78981 -11.62327 -11.35244 -10.92714 -10.63304 -10.35913 -9.69652 -8.58519 -6.62433 0.17067 0.33263 1.21876 1.37686 1.44200 1.53526 1.61775 1.65154 1.99141 2.07438 2.15924 2.37178 2.69892 2.87765 3.42022 3.79025 4.00172 4.23008 4.30620 4.31858 4.36746 4.43087 4.63658 4.66130 4.72501 5.09849 5.12611 5.32182 5.46049 5.63033 5.88918 6.01482 6.63271 6.76498 6.78417 7.01784 7.11195 7.56571 8.44927 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.013896 B = 0.005590 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.516839 B = 5007.686935 C = 6406.986389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.451 3.549 4 O -0.533 6.533 5 C 0.128 3.872 6 N -0.423 5.423 7 C -0.394 4.394 8 H 0.092 0.908 9 C 0.032 3.968 10 N -0.861 5.861 11 Si 0.970 3.030 12 H -0.257 1.257 13 H -0.269 1.269 14 H -0.260 1.260 15 C 0.551 3.449 16 O -0.599 6.599 17 C -0.004 4.004 18 C -0.125 4.125 19 C -0.035 4.035 20 C 0.592 3.408 21 O -0.531 6.531 22 O -0.492 6.492 23 N -0.223 5.223 24 N -0.329 5.329 25 H 0.461 0.539 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.107 0.893 31 H 0.288 0.712 32 H 0.173 0.827 33 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.246 2.961 -1.798 4.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.294 3.706 4 O -0.422 6.422 5 C 0.003 3.997 6 N -0.141 5.141 7 C -0.521 4.521 8 H 0.109 0.891 9 C -0.178 4.178 10 N -0.493 5.493 11 Si 0.790 3.210 12 H -0.181 1.181 13 H -0.193 1.193 14 H -0.184 1.184 15 C 0.340 3.660 16 O -0.483 6.483 17 C -0.132 4.132 18 C -0.154 4.154 19 C -0.190 4.190 20 C 0.434 3.566 21 O -0.419 6.419 22 O -0.305 6.305 23 N -0.065 5.065 24 N -0.062 5.062 25 H 0.323 0.677 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.156 0.844 29 H 0.154 0.846 30 H 0.124 0.876 31 H 0.099 0.901 32 H 0.191 0.809 33 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges -2.235 3.037 -2.212 4.372 hybrid contribution -0.336 -0.069 -0.131 0.367 sum -2.571 2.968 -2.342 4.573 Atomic orbital electron populations 1.23532 0.75096 1.05735 1.02133 1.86506 1.24944 1.32572 1.84032 1.24946 0.93250 0.81422 0.71026 1.90577 1.67585 1.37522 1.46532 1.20968 0.85202 0.86725 1.06818 1.42817 1.57143 1.09352 1.04806 1.19500 1.30157 1.07978 0.94495 0.89051 1.26406 0.92226 0.96098 1.03065 1.69812 1.22195 1.20545 1.36760 0.85274 0.79887 0.79077 0.76725 1.18143 1.19311 1.18419 1.17604 0.79161 0.84977 0.84253 1.90673 1.57474 1.67906 1.32273 1.21262 1.09778 0.93797 0.88327 1.21804 1.03517 0.90218 0.99855 1.20667 1.14102 0.93851 0.90340 1.18858 0.71767 0.82090 0.83879 1.90896 1.49696 1.85924 1.15398 1.84598 1.80282 1.20121 1.45497 1.73565 1.15755 1.02857 1.14348 1.45735 1.44516 1.03947 1.12018 0.67696 0.92581 0.92231 0.84363 0.84608 0.87560 0.90112 0.80910 0.69989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.56 113.37 1.20 1.92 16 2 O -0.36 -12.68 10.57 -51.35 -0.54 -13.22 16 3 C 0.45 19.01 8.02 71.24 0.57 19.58 16 4 O -0.53 -25.25 16.18 21.97 0.36 -24.89 16 5 C 0.13 5.58 5.57 85.63 0.48 6.06 16 6 N -0.42 -19.88 1.90 -643.70 -1.22 -21.11 16 7 C -0.39 -17.60 6.68 84.11 0.56 -17.04 16 8 H 0.09 3.97 5.98 -2.91 -0.02 3.96 16 9 C 0.03 1.37 5.15 84.96 0.44 1.81 16 10 N -0.86 -38.37 11.76 21.68 0.25 -38.12 16 11 Si 0.97 32.94 29.56 68.60 2.03 34.96 16 12 H -0.26 -8.40 7.11 99.48 0.71 -7.69 16 13 H -0.27 -8.99 7.11 99.48 0.71 -8.29 16 14 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 15 C 0.55 26.78 7.61 86.56 0.66 27.44 16 16 O -0.60 -31.19 16.48 -4.25 -0.07 -31.26 16 17 C 0.00 -0.19 6.80 40.42 0.27 0.08 16 18 C -0.13 -5.01 10.56 22.66 0.24 -4.77 16 19 C -0.04 -1.30 7.13 42.26 0.30 -1.00 16 20 C 0.59 18.42 8.34 70.30 0.59 19.01 16 21 O -0.53 -18.30 17.70 19.88 0.35 -17.95 16 22 O -0.49 -11.25 13.44 -56.27 -0.76 -12.00 16 23 N -0.22 -8.30 12.22 -48.50 -0.59 -8.90 16 24 N -0.33 -13.02 6.23 -48.71 -0.30 -13.32 16 25 H 0.46 17.68 5.11 -220.00 -1.13 16.55 16 26 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 27 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 28 H 0.14 2.32 8.14 -2.38 -0.02 2.30 16 29 H 0.14 5.89 6.15 -2.39 -0.01 5.88 16 30 H 0.11 4.59 7.40 -2.39 -0.02 4.58 16 31 H 0.29 11.91 8.31 -92.71 -0.77 11.14 16 32 H 0.17 6.63 8.06 -2.91 -0.02 6.60 16 33 H 0.44 4.68 9.11 -74.06 -0.67 4.01 16 Total: -1.00 -63.03 308.30 4.23 -58.81 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: -0.58 Total: 33.91 kcal Atomic # 6 Polarization: 47.79 SS G_CDS: 5.31 Total: 53.10 kcal Atomic # 7 Polarization: -79.58 SS G_CDS: -1.86 Total: -81.45 kcal Atomic # 8 Polarization: -98.67 SS G_CDS: -0.66 Total: -99.33 kcal Atomic # 14 Polarization: 32.94 SS G_CDS: 2.03 Total: 34.96 kcal Total: -63.03 4.23 -58.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604326317.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.991 kcal (2) G-P(sol) polarization free energy of solvation -63.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds