Wall clock time and date at job start Tue Mar 31 2020 03:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00235 * 2 1 4 4 H 1.48498 * 109.47166 * 270.00266 * 3 2 1 5 5 H 1.48501 * 109.46854 * 29.99951 * 3 2 1 6 6 H 1.48506 * 109.47099 * 149.99690 * 3 2 1 7 7 C 1.38813 * 119.99559 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99498 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00198 * 359.97438 * 7 2 1 10 10 C 1.47580 * 134.49317 * 179.97438 * 9 7 2 11 11 C 1.53941 * 86.11781 * 155.36226 * 10 9 7 12 12 C 1.53001 * 113.74355 * 269.15668 * 11 10 9 13 13 C 1.52998 * 109.46963 * 172.64048 * 12 11 10 14 14 O 1.42908 * 109.47189 * 178.34881 * 13 12 11 15 15 N 1.46500 * 113.74203 * 137.95230 * 11 10 9 16 16 C 1.34780 * 119.99585 * 66.90486 * 15 11 10 17 17 O 1.21623 * 120.00435 * 354.80139 * 16 15 11 18 18 C 1.47269 * 119.99845 * 174.80082 * 16 15 11 19 19 C 1.35203 * 123.14334 * 179.97438 * 18 16 15 20 20 S 1.70942 * 108.82974 * 180.02562 * 19 18 16 21 21 C 1.70768 * 91.12846 * 0.02562 * 20 19 18 22 22 N 1.28645 * 110.56197 * 0.02562 * 21 20 19 23 23 C 1.47816 * 134.45754 * 359.86964 * 9 7 2 24 24 H 0.97005 * 119.99918 * 359.97438 * 1 2 3 25 25 H 1.09008 * 113.76849 * 41.06211 * 10 9 7 26 26 H 1.08996 * 113.87493 * 269.68013 * 10 9 7 27 27 H 1.08995 * 109.47245 * 292.64022 * 12 11 10 28 28 H 1.08998 * 109.47230 * 52.64447 * 12 11 10 29 29 H 1.08998 * 109.47610 * 298.34615 * 13 12 11 30 30 H 1.08999 * 109.47552 * 58.34803 * 13 12 11 31 31 H 0.96692 * 113.99856 * 180.02562 * 14 13 12 32 32 H 0.96999 * 120.00132 * 246.90414 * 15 11 10 33 33 H 1.08000 * 125.58887 * 0.02562 * 19 18 16 34 34 H 1.08001 * 124.71831 * 180.02562 * 21 20 19 35 35 H 1.08999 * 113.76621 * 90.37305 * 23 9 7 36 36 H 1.08999 * 113.83446 * 318.91121 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 1.7200 -3.8102 0.0019 11 6 0.3474 -4.0826 0.6434 12 6 0.3659 -4.0552 2.1730 13 6 -1.0664 -4.1530 2.7022 14 8 -1.0464 -4.1661 4.1311 15 7 -0.3334 -5.2612 0.1015 16 6 0.1759 -6.4908 0.3143 17 8 1.2485 -6.6164 0.8737 18 6 -0.5665 -7.6824 -0.1305 19 6 -0.1154 -8.9442 0.0495 20 16 -1.2575 -10.0366 -0.6020 21 6 -2.2704 -8.7466 -1.0777 22 7 -1.7473 -7.6174 -0.7514 23 6 -0.1059 -2.7570 0.0048 24 1 -0.4850 0.8401 0.0004 25 1 2.5628 -4.0321 0.6567 26 1 1.8318 -4.2372 -0.9946 27 1 0.9488 -4.8979 2.5445 28 1 0.8164 -3.1232 2.5143 29 1 -1.6415 -3.2947 2.3548 30 1 -1.5269 -5.0709 2.3368 31 1 -1.9223 -4.2271 4.5360 32 1 -1.1507 -5.1566 -0.4104 33 1 0.8141 -9.2173 0.5268 34 1 -3.2182 -8.8625 -1.5822 35 1 -0.5320 -2.8725 -0.9918 36 1 -0.7184 -2.1396 0.6618 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755329791.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:13 Heat of formation + Delta-G solvation = 20.491887 kcal Electronic energy + Delta-G solvation = -21990.659984 eV Core-core repulsion = 18604.004521 eV Total energy + Delta-G solvation = -3386.655463 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.093 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.56634 -39.28557 -37.50706 -36.34546 -33.63251 -31.89531 -30.79973 -30.23364 -27.21016 -25.97415 -25.02933 -23.62588 -22.59908 -21.37305 -19.69282 -18.95884 -18.57735 -17.15398 -16.75540 -16.41844 -15.79420 -15.42315 -15.20988 -14.69508 -14.56023 -14.01136 -13.85798 -13.62190 -13.54399 -13.45278 -12.47461 -12.26148 -11.85123 -11.69438 -11.55010 -11.03639 -10.92214 -10.74224 -10.69580 -10.20783 -10.11719 -9.96355 -9.95079 -9.72672 -9.60154 -9.27617 -9.22854 -8.87015 -8.55458 -6.90653 -5.78244 -3.10067 0.35471 1.03450 1.38777 1.93413 3.39530 3.43533 3.47091 3.48286 3.51059 4.00168 4.48072 4.50489 4.83258 5.03367 5.12292 5.23469 5.25724 5.50658 5.57478 5.67695 5.76916 5.85645 5.98214 6.35784 6.49520 6.54459 6.67548 6.75839 6.86428 7.12529 7.18435 7.34108 7.50096 7.87322 7.92018 7.96374 8.48212 9.03484 9.69617 10.56162 11.39428 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.023721 B = 0.003839 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.107805 B = 7292.152702 C = 7746.057461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.219 4.219 8 H 0.083 0.917 9 N -0.604 5.604 10 C 0.129 3.871 11 C 0.121 3.879 12 C -0.094 4.094 13 C 0.082 3.918 14 O -0.575 6.575 15 N -0.695 5.695 16 C 0.589 3.411 17 O -0.530 6.530 18 C 0.011 3.989 19 C -0.223 4.223 20 S 0.196 5.804 21 C -0.002 4.002 22 N -0.439 5.439 23 C 0.168 3.832 24 H 0.254 0.746 25 H 0.053 0.947 26 H 0.036 0.964 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.036 0.964 31 H 0.372 0.628 32 H 0.406 0.594 33 H 0.190 0.810 34 H 0.204 0.796 35 H 0.032 0.968 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.972 -20.028 -0.397 21.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.347 4.347 8 H 0.100 0.900 9 N -0.331 5.331 10 C 0.002 3.998 11 C 0.035 3.965 12 C -0.133 4.133 13 C 0.004 3.996 14 O -0.379 6.379 15 N -0.346 5.346 16 C 0.371 3.629 17 O -0.406 6.406 18 C -0.124 4.124 19 C -0.365 4.365 20 S 0.450 5.550 21 C -0.302 4.302 22 N -0.154 5.154 23 C 0.042 3.958 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.091 0.909 28 H 0.110 0.890 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.217 0.783 32 H 0.241 0.759 33 H 0.207 0.793 34 H 0.221 0.779 35 H 0.050 0.950 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.878 -20.215 -0.299 21.356 hybrid contribution -0.235 1.621 -0.213 1.651 sum -7.114 -18.595 -0.512 19.916 Atomic orbital electron populations 1.69792 1.05009 1.25422 1.56722 1.24769 0.95702 0.97519 1.02310 0.86092 0.78699 0.83289 0.77533 1.21649 1.21614 1.20537 1.19011 0.90328 0.81537 1.43820 0.89971 1.45715 1.01829 0.99505 1.86053 1.22796 0.94450 0.85621 0.96945 1.23044 0.95849 0.84355 0.93253 1.21326 0.95553 1.04292 0.92128 1.22135 0.98329 0.99206 0.79916 1.86489 1.33594 1.97492 1.20354 1.46039 1.28970 1.05221 1.54321 1.17083 0.84514 0.82059 0.79213 1.90808 1.20668 1.86119 1.43024 1.20769 0.93087 0.94770 1.03761 1.26637 1.06796 0.96249 1.06832 1.82881 1.10566 1.12280 1.49285 1.28467 1.05569 0.90681 1.05463 1.66978 1.08705 1.28232 1.11460 1.22583 0.89009 0.87219 0.97038 0.93606 0.92909 0.94634 0.90893 0.88956 0.93163 0.94609 0.78275 0.75878 0.79319 0.77913 0.95019 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.97 11.39 55.49 0.63 -26.34 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.22 -6.21 10.70 -15.06 -0.16 -6.38 16 8 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 9 N -0.60 -15.71 3.55 -177.50 -0.63 -16.34 16 10 C 0.13 2.89 7.55 -2.97 -0.02 2.87 16 11 C 0.12 2.41 0.67 -134.03 -0.09 2.32 16 12 C -0.09 -1.88 4.81 -26.73 -0.13 -2.01 16 13 C 0.08 1.40 6.83 37.16 0.25 1.65 16 14 O -0.57 -9.49 13.66 -35.23 -0.48 -9.97 16 15 N -0.70 -11.76 4.52 -50.18 -0.23 -11.98 16 16 C 0.59 9.96 7.45 -12.59 -0.09 9.87 16 17 O -0.53 -10.36 15.11 5.26 0.08 -10.28 16 18 C 0.01 0.15 6.70 -84.52 -0.57 -0.41 16 19 C -0.22 -2.44 10.62 29.65 0.31 -2.13 16 20 S 0.20 1.38 22.97 -107.50 -2.47 -1.09 16 21 C 0.00 -0.02 12.17 51.43 0.63 0.61 16 22 N -0.44 -5.32 10.13 -12.36 -0.13 -5.44 16 23 C 0.17 3.88 6.69 -2.83 -0.02 3.86 16 24 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.05 1.20 8.10 -51.92 -0.42 0.78 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 1.51 7.08 -51.93 -0.37 1.14 16 28 H 0.09 2.09 8.02 -51.93 -0.42 1.68 16 29 H 0.05 0.87 7.54 -51.93 -0.39 0.47 16 30 H 0.04 0.57 7.62 -51.93 -0.40 0.17 16 31 H 0.37 4.12 9.12 45.56 0.42 4.53 16 32 H 0.41 6.24 8.23 -40.82 -0.34 5.91 16 33 H 0.19 1.94 8.03 -52.49 -0.42 1.52 16 34 H 0.20 0.91 8.06 -52.49 -0.42 0.48 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 2.08 6.56 -51.93 -0.34 1.74 16 LS Contribution 322.69 15.07 4.86 4.86 Total: -1.00 -34.25 322.69 -6.85 -41.10 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -3.49 Total: 8.23 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 0.02 Total: 9.97 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: -0.35 Total: -60.10 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.40 Total: -20.25 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.47 Total: -1.09 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.25 -6.85 -41.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755329791.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.596 kcal (2) G-P(sol) polarization free energy of solvation -34.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds