Wall clock time and date at job start Tue Mar 31 2020 03:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00235 * 2 1 4 4 H 1.48498 * 109.47166 * 270.00266 * 3 2 1 5 5 H 1.48501 * 109.46854 * 29.99951 * 3 2 1 6 6 H 1.48506 * 109.47099 * 149.99690 * 3 2 1 7 7 C 1.38813 * 119.99559 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99498 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00198 * 359.97438 * 7 2 1 10 10 C 1.47580 * 134.49317 * 179.97438 * 9 7 2 11 11 C 1.53941 * 86.11781 * 155.36226 * 10 9 7 12 12 C 1.53001 * 113.74355 * 269.15668 * 11 10 9 13 13 C 1.52998 * 109.46963 * 172.64048 * 12 11 10 14 14 O 1.42908 * 109.47189 * 178.34881 * 13 12 11 15 15 N 1.46500 * 113.74203 * 137.95230 * 11 10 9 16 16 C 1.34780 * 119.99585 * 66.90486 * 15 11 10 17 17 O 1.21623 * 120.00435 * 354.80139 * 16 15 11 18 18 C 1.47269 * 119.99845 * 174.80082 * 16 15 11 19 19 C 1.35203 * 123.14334 * 179.97438 * 18 16 15 20 20 S 1.70942 * 108.82974 * 180.02562 * 19 18 16 21 21 C 1.70768 * 91.12846 * 0.02562 * 20 19 18 22 22 N 1.28645 * 110.56197 * 0.02562 * 21 20 19 23 23 C 1.47816 * 134.45754 * 359.86964 * 9 7 2 24 24 H 0.97005 * 119.99918 * 359.97438 * 1 2 3 25 25 H 1.09008 * 113.76849 * 41.06211 * 10 9 7 26 26 H 1.08996 * 113.87493 * 269.68013 * 10 9 7 27 27 H 1.08995 * 109.47245 * 292.64022 * 12 11 10 28 28 H 1.08998 * 109.47230 * 52.64447 * 12 11 10 29 29 H 1.08998 * 109.47610 * 298.34615 * 13 12 11 30 30 H 1.08999 * 109.47552 * 58.34803 * 13 12 11 31 31 H 0.96692 * 113.99856 * 180.02562 * 14 13 12 32 32 H 0.96999 * 120.00132 * 246.90414 * 15 11 10 33 33 H 1.08000 * 125.58887 * 0.02562 * 19 18 16 34 34 H 1.08001 * 124.71831 * 180.02562 * 21 20 19 35 35 H 1.08999 * 113.76621 * 90.37305 * 23 9 7 36 36 H 1.08999 * 113.83446 * 318.91121 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 1.7200 -3.8102 0.0019 11 6 0.3474 -4.0826 0.6434 12 6 0.3659 -4.0552 2.1730 13 6 -1.0664 -4.1530 2.7022 14 8 -1.0464 -4.1661 4.1311 15 7 -0.3334 -5.2612 0.1015 16 6 0.1759 -6.4908 0.3143 17 8 1.2485 -6.6164 0.8737 18 6 -0.5665 -7.6824 -0.1305 19 6 -0.1154 -8.9442 0.0495 20 16 -1.2575 -10.0366 -0.6020 21 6 -2.2704 -8.7466 -1.0777 22 7 -1.7473 -7.6174 -0.7514 23 6 -0.1059 -2.7570 0.0048 24 1 -0.4850 0.8401 0.0004 25 1 2.5628 -4.0321 0.6567 26 1 1.8318 -4.2372 -0.9946 27 1 0.9488 -4.8979 2.5445 28 1 0.8164 -3.1232 2.5143 29 1 -1.6415 -3.2947 2.3548 30 1 -1.5269 -5.0709 2.3368 31 1 -1.9223 -4.2271 4.5360 32 1 -1.1507 -5.1566 -0.4104 33 1 0.8141 -9.2173 0.5268 34 1 -3.2182 -8.8625 -1.5822 35 1 -0.5320 -2.8725 -0.9918 36 1 -0.7184 -2.1396 0.6618 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755329791.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:12 Heat of formation + Delta-G solvation = -7.787891 kcal Electronic energy + Delta-G solvation = -21991.886287 eV Core-core repulsion = 18604.004521 eV Total energy + Delta-G solvation = -3387.881766 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 297.093 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.79202 -40.56743 -38.93851 -37.74419 -35.31949 -33.79364 -32.04343 -31.46656 -29.09911 -27.00525 -26.89627 -25.13037 -23.84795 -23.10569 -20.80518 -20.24407 -19.81042 -18.79179 -18.47817 -17.59577 -16.95435 -16.81852 -16.65159 -16.33828 -15.92607 -15.67208 -15.18377 -15.10675 -14.74220 -14.39664 -14.27187 -13.76140 -13.38102 -13.29137 -12.93838 -12.87602 -12.80859 -12.59852 -12.30116 -12.07585 -11.75675 -11.49558 -11.14596 -10.93851 -10.84528 -10.77671 -10.69023 -10.19351 -9.86620 -8.99106 -7.93947 -5.27905 -0.42298 0.36927 0.68059 0.99658 1.45901 1.47796 1.56571 2.11266 2.34118 2.49047 3.07788 3.16187 3.24915 3.39777 3.57226 3.98957 4.08478 4.16207 4.24460 4.28125 4.42126 4.44576 4.66107 4.68153 4.81367 4.91159 4.97074 5.08905 5.12016 5.18366 5.44125 5.63241 5.86302 6.33801 6.65911 6.86581 6.88283 7.16837 7.55012 8.47952 9.23063 Molecular weight = 297.09amu Principal moments of inertia in cm(-1) A = 0.023721 B = 0.003839 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.107805 B = 7292.152702 C = 7746.057461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.057 4.057 3 Si 0.980 3.020 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.272 1.272 7 C -0.240 4.240 8 H 0.081 0.919 9 N -0.629 5.629 10 C 0.127 3.873 11 C 0.151 3.849 12 C -0.088 4.088 13 C 0.094 3.906 14 O -0.590 6.590 15 N -0.690 5.690 16 C 0.588 3.412 17 O -0.564 6.564 18 C -0.019 4.019 19 C -0.239 4.239 20 S 0.298 5.702 21 C -0.005 4.005 22 N -0.471 5.471 23 C 0.173 3.827 24 H 0.252 0.748 25 H 0.045 0.955 26 H 0.038 0.962 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.397 0.603 32 H 0.415 0.585 33 H 0.189 0.811 34 H 0.241 0.759 35 H 0.031 0.969 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.283 -22.193 -0.854 24.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.251 4.251 3 Si 0.808 3.192 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.197 1.197 7 C -0.368 4.368 8 H 0.099 0.901 9 N -0.356 5.356 10 C 0.001 3.999 11 C 0.064 3.936 12 C -0.127 4.127 13 C 0.016 3.984 14 O -0.398 6.398 15 N -0.341 5.341 16 C 0.373 3.627 17 O -0.443 6.443 18 C -0.154 4.154 19 C -0.382 4.382 20 S 0.554 5.446 21 C -0.303 4.303 22 N -0.187 5.187 23 C 0.048 3.952 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.246 0.754 32 H 0.252 0.748 33 H 0.206 0.794 34 H 0.257 0.743 35 H 0.049 0.951 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.228 -22.437 -0.765 23.910 hybrid contribution 0.136 2.080 -0.091 2.086 sum -8.092 -20.357 -0.856 21.923 Atomic orbital electron populations 1.69953 1.06211 1.25900 1.57472 1.25575 0.96652 1.00576 1.02257 0.85064 0.77674 0.78963 0.77509 1.21168 1.21620 1.19650 1.19344 0.90755 0.82900 1.43834 0.90115 1.45988 1.03210 1.00151 1.86254 1.22851 0.95800 0.84170 0.97084 1.22347 0.93830 0.84412 0.93003 1.21180 0.97401 1.02007 0.92071 1.21911 0.96033 0.99927 0.80529 1.86426 1.36094 1.97507 1.19774 1.45805 1.29126 1.04578 1.54619 1.17552 0.84220 0.82698 0.78221 1.90780 1.22278 1.86707 1.44564 1.20286 0.94498 0.93866 1.06743 1.26909 1.07965 0.96917 1.06456 1.82577 1.07073 1.08958 1.46040 1.29137 1.06680 0.90424 1.04094 1.66949 1.08504 1.30400 1.12808 1.22439 0.87574 0.88519 0.96697 0.93929 0.93713 0.94397 0.91727 0.92288 0.93375 0.92832 0.75357 0.74776 0.79393 0.74264 0.95128 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.53 11.39 21.65 0.25 -56.29 16 2 C -0.06 -3.27 5.50 84.86 0.47 -2.81 16 3 Si 0.98 46.40 29.55 68.60 2.03 48.43 16 4 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.24 -13.98 10.70 84.03 0.90 -13.08 16 8 H 0.08 4.56 7.83 -2.91 -0.02 4.54 16 9 N -0.63 -33.86 3.55 -715.49 -2.54 -36.40 16 10 C 0.13 5.93 7.55 86.48 0.65 6.59 16 11 C 0.15 6.21 0.67 5.37 0.00 6.21 16 12 C -0.09 -3.61 4.81 30.59 0.15 -3.47 16 13 C 0.09 3.19 6.83 71.98 0.49 3.69 16 14 O -0.59 -19.01 13.66 -148.98 -2.04 -21.05 16 15 N -0.69 -23.58 4.52 -430.93 -1.95 -25.52 16 16 C 0.59 20.01 7.45 86.62 0.65 20.65 16 17 O -0.56 -22.55 15.11 -4.10 -0.06 -22.61 16 18 C -0.02 -0.50 6.70 40.56 0.27 -0.22 16 19 C -0.24 -4.81 10.62 67.12 0.71 -4.10 16 20 S 0.30 3.04 22.97 -56.49 -1.30 1.74 16 21 C 0.00 -0.06 12.17 130.71 1.59 1.53 16 22 N -0.47 -10.48 10.13 -193.02 -1.96 -12.43 16 23 C 0.17 8.31 6.69 86.45 0.58 8.89 16 24 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 25 H 0.04 2.13 8.10 -2.38 -0.02 2.12 16 26 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.06 2.76 7.08 -2.39 -0.02 2.74 16 28 H 0.06 2.80 8.02 -2.39 -0.02 2.79 16 29 H 0.05 1.67 7.54 -2.39 -0.02 1.65 16 30 H 0.05 1.65 7.62 -2.39 -0.02 1.63 16 31 H 0.40 8.14 9.12 -74.06 -0.68 7.46 16 32 H 0.41 12.74 8.23 -92.71 -0.76 11.98 16 33 H 0.19 3.67 8.03 -2.91 -0.02 3.65 16 34 H 0.24 1.00 8.06 -2.91 -0.02 0.97 16 35 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 3.22 6.56 -2.39 -0.02 3.21 16 Total: -1.00 -76.25 322.69 -1.41 -77.66 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: -0.30 Total: 22.58 kcal Atomic # 6 Polarization: 17.43 SS G_CDS: 6.46 Total: 23.89 kcal Atomic # 7 Polarization: -124.45 SS G_CDS: -6.20 Total: -130.64 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -2.10 Total: -43.66 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Atomic # 16 Polarization: 3.04 SS G_CDS: -1.30 Total: 1.74 kcal Total: -76.25 -1.41 -77.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755329791.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.871 kcal (2) G-P(sol) polarization free energy of solvation -76.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds