Wall clock time and date at job start Tue Mar 31 2020 03:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00151 * 2 1 4 4 H 1.48496 * 109.47144 * 239.99785 * 3 2 1 5 5 H 1.48494 * 109.46942 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46979 * 119.99980 * 3 2 1 7 7 C 1.37883 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99789 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99872 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.46993 * 179.97438 * 9 7 2 11 11 C 1.42898 * 113.99948 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47206 * 180.02562 * 11 10 9 13 13 O 1.45201 * 109.46884 * 65.00487 * 12 11 10 14 14 C 1.34222 * 117.00137 * 179.97438 * 13 12 11 15 15 O 1.20833 * 119.99852 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00432 * 179.71953 * 14 13 12 17 17 C 1.50703 * 115.54421 * 34.69691 * 16 14 13 18 18 O 1.21283 * 120.00176 * 145.58338 * 17 16 14 19 19 N 1.34776 * 120.00093 * 325.57704 * 17 16 14 20 20 C 1.46505 * 119.99816 * 180.02562 * 19 17 16 21 21 C 1.52998 * 117.49910 * 223.62200 * 20 19 17 22 22 C 1.52994 * 60.00406 * 252.51570 * 21 20 19 23 23 C 1.53002 * 117.50414 * 249.02643 * 16 14 13 24 24 C 1.52997 * 117.50207 * 180.36312 * 16 14 13 25 25 H 0.97001 * 120.00074 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47145 * 60.00160 * 9 7 2 27 27 H 1.09001 * 109.47167 * 299.99920 * 9 7 2 28 28 H 1.09007 * 109.46964 * 60.00233 * 11 10 9 29 29 H 1.09004 * 109.47483 * 300.00743 * 11 10 9 30 30 H 1.08997 * 109.46911 * 305.00446 * 12 11 10 31 31 H 1.08997 * 109.46745 * 185.00455 * 12 11 10 32 32 H 0.96997 * 119.99982 * 0.02562 * 19 17 16 33 33 H 1.08996 * 115.55249 * 9.33757 * 20 19 17 34 34 H 1.09011 * 117.49972 * 0.02562 * 21 20 19 35 35 H 1.08997 * 117.50136 * 145.02258 * 21 20 19 36 36 H 1.08994 * 117.50178 * 252.51439 * 22 21 20 37 37 H 1.09000 * 117.50079 * 107.48853 * 22 21 20 38 38 H 1.08995 * 117.49660 * 359.97438 * 23 16 14 39 39 H 1.08997 * 117.49791 * 145.01695 * 23 16 14 40 40 H 1.08999 * 117.49888 * 214.98700 * 24 16 14 41 41 H 1.08998 * 117.49905 * 359.97438 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5650 -4.8754 0.0011 12 6 2.6480 -5.9562 0.0017 13 8 3.3991 -5.8881 1.2425 14 6 4.3931 -6.7757 1.4027 15 8 4.6281 -7.5827 0.5346 16 6 5.2204 -6.7614 2.6621 17 6 4.4806 -6.3901 3.9215 18 8 4.7831 -6.9055 4.9769 19 7 3.4828 -5.4853 3.8750 20 6 2.7640 -5.1239 5.0993 21 6 1.2401 -5.0151 5.0179 22 6 2.0915 -3.7503 5.1444 23 6 6.6801 -6.3186 2.5437 24 6 6.3441 -7.7930 2.7810 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 0.9446 -4.9827 -0.8887 29 1 0.9450 -4.9822 0.8913 30 1 3.3216 -5.7960 -0.8401 31 1 2.1819 -6.9375 -0.0875 32 1 3.2407 -5.0733 3.0309 33 1 3.1929 -5.5049 6.0261 34 1 0.7722 -5.2128 4.0534 35 1 0.6660 -5.3248 5.8911 36 1 2.0777 -3.2279 6.1009 37 1 2.1840 -3.1155 4.2631 38 1 7.0422 -6.0379 1.5547 39 1 7.1054 -5.7590 3.3767 40 1 6.5484 -8.2028 3.7702 41 1 6.4846 -8.4823 1.9485 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815206607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:24 Heat of formation + Delta-G solvation = -117.152156 kcal Electronic energy + Delta-G solvation = -24487.783918 eV Core-core repulsion = 20755.947234 eV Total energy + Delta-G solvation = -3731.836684 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.15381 -39.62979 -37.82395 -37.06332 -36.40066 -35.72016 -32.90427 -32.76476 -30.34007 -27.16128 -26.21515 -23.33806 -22.86658 -22.48405 -22.33820 -22.05385 -21.07910 -20.13105 -18.62718 -17.23093 -16.76520 -16.51953 -16.32222 -15.99074 -15.41381 -14.87935 -14.76607 -14.74367 -14.50153 -14.37305 -14.09107 -13.37871 -13.08218 -12.87487 -12.47429 -12.08359 -11.85934 -11.58775 -11.57038 -11.52196 -11.39131 -11.11188 -10.98445 -10.88802 -10.84269 -10.64219 -10.57178 -10.47890 -10.14042 -9.96357 -9.23469 -8.98079 -8.76522 -8.31488 -6.19247 -4.21602 1.78937 2.20426 2.50381 2.97649 3.26746 3.30236 3.33452 3.43262 3.93760 4.23559 4.26288 4.27864 4.51335 4.54347 4.61267 4.82325 4.98290 5.02334 5.06779 5.17570 5.28946 5.28989 5.30896 5.55662 5.68038 5.71458 5.73933 5.78887 5.80262 5.90400 5.99701 6.16802 6.32483 6.48344 6.94359 7.29163 7.46028 7.56383 7.69442 8.03185 8.10503 8.40709 8.90004 9.43639 10.91999 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.013735 B = 0.004278 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.056518 B = 6543.111838 C = 7268.883759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.059 3.941 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.391 6.391 11 C 0.060 3.940 12 C 0.076 3.924 13 O -0.346 6.346 14 C 0.503 3.497 15 O -0.500 6.500 16 C -0.183 4.183 17 C 0.561 3.439 18 O -0.538 6.538 19 N -0.686 5.686 20 C 0.073 3.927 21 C -0.191 4.191 22 C -0.184 4.184 23 C -0.118 4.118 24 C -0.109 4.109 25 H 0.265 0.735 26 H 0.006 0.994 27 H 0.007 0.993 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.418 0.582 33 H 0.136 0.864 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.123 0.877 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.863 -12.945 6.855 16.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.121 3.879 10 O -0.311 6.311 11 C -0.018 4.018 12 C 0.003 3.997 13 O -0.262 6.262 14 C 0.345 3.655 15 O -0.388 6.388 16 C -0.187 4.187 17 C 0.346 3.654 18 O -0.416 6.416 19 N -0.339 5.339 20 C -0.033 4.033 21 C -0.229 4.229 22 C -0.222 4.222 23 C -0.156 4.156 24 C -0.146 4.146 25 H 0.075 0.925 26 H 0.024 0.976 27 H 0.025 0.975 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.260 0.740 33 H 0.154 0.846 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.141 0.859 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.130 -13.360 7.286 16.805 hybrid contribution -0.419 1.138 -0.684 1.392 sum 6.711 -12.222 6.603 15.427 Atomic orbital electron populations 1.69939 1.06099 1.27400 1.50165 1.24927 0.94957 0.99402 0.94989 0.86407 0.79354 0.81907 0.78902 1.19996 1.21105 1.19958 1.20976 0.94010 0.89221 1.51350 0.91588 1.20238 0.88682 0.83392 0.95539 1.87920 1.35352 1.12532 1.95248 1.22353 0.93137 0.85506 1.00797 1.23334 0.93630 0.99144 0.83617 1.86292 1.43629 1.53948 1.42360 1.21956 0.78765 0.78120 0.86637 1.90661 1.67619 1.37732 1.42761 1.21116 0.92119 1.13897 0.91597 1.18873 0.79662 0.78832 0.87993 1.90684 1.66645 1.53833 1.30455 1.45625 1.34276 1.42192 1.11845 1.21630 0.91511 1.00530 0.89649 1.23404 0.93457 1.02183 1.03884 1.23434 1.03100 0.91074 1.04608 1.23207 0.88484 0.98551 1.05324 1.23219 0.93419 0.92296 1.05681 0.92508 0.97620 0.97488 0.91614 0.93220 0.90014 0.90080 0.74047 0.84637 0.88299 0.88116 0.87858 0.87374 0.86666 0.86433 0.85896 0.86282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.84 13.29 55.43 0.74 -25.11 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -14.54 9.43 -34.44 -0.32 -14.87 16 8 H 0.07 1.85 7.81 -52.48 -0.41 1.44 16 9 C 0.20 5.03 5.69 36.00 0.20 5.23 16 10 O -0.39 -8.66 10.30 -38.79 -0.40 -9.06 16 11 C 0.06 0.98 6.33 37.16 0.24 1.22 16 12 C 0.08 1.08 5.85 37.16 0.22 1.30 16 13 O -0.35 -5.18 7.29 -42.00 -0.31 -5.48 16 14 C 0.50 7.22 7.48 36.00 0.27 7.48 16 15 O -0.50 -7.82 16.01 -18.76 -0.30 -8.12 16 16 C -0.18 -2.31 2.56 -156.81 -0.40 -2.71 16 17 C 0.56 8.01 7.38 -10.98 -0.08 7.93 16 18 O -0.54 -8.66 15.82 5.56 0.09 -8.57 16 19 N -0.69 -9.58 5.38 -53.80 -0.29 -9.87 16 20 C 0.07 0.92 6.43 -67.93 -0.44 0.49 16 21 C -0.19 -2.22 10.46 -26.74 -0.28 -2.50 16 22 C -0.18 -2.25 10.46 -26.73 -0.28 -2.53 16 23 C -0.12 -1.16 9.94 -26.69 -0.27 -1.43 16 24 C -0.11 -1.10 9.56 -26.69 -0.26 -1.35 16 25 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 1.19 8.13 -51.93 -0.42 0.77 16 31 H 0.08 0.97 8.13 -51.93 -0.42 0.55 16 32 H 0.42 6.14 5.99 -40.82 -0.24 5.89 16 33 H 0.14 1.70 7.40 -51.93 -0.38 1.32 16 34 H 0.10 1.22 8.14 -51.92 -0.42 0.80 16 35 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.11 1.54 8.14 -51.93 -0.42 1.11 16 38 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.12 1.18 7.67 -51.93 -0.40 0.78 16 41 H 0.12 1.13 7.67 -51.93 -0.40 0.73 16 LS Contribution 358.51 15.07 5.40 5.40 Total: -1.00 -32.07 358.51 -7.63 -39.70 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.04 Total: 5.20 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -1.50 Total: -0.21 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.45 Total: -34.98 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.92 Total: -31.24 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.07 -7.63 -39.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815206607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.453 kcal (2) G-P(sol) polarization free energy of solvation -32.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds