Wall clock time and date at job start Tue Mar 31 2020 03:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00151 * 2 1 4 4 H 1.48496 * 109.47144 * 239.99785 * 3 2 1 5 5 H 1.48494 * 109.46942 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46979 * 119.99980 * 3 2 1 7 7 C 1.37883 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99789 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99872 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.46993 * 179.97438 * 9 7 2 11 11 C 1.42898 * 113.99948 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47206 * 180.02562 * 11 10 9 13 13 O 1.45201 * 109.46884 * 65.00487 * 12 11 10 14 14 C 1.34222 * 117.00137 * 179.97438 * 13 12 11 15 15 O 1.20833 * 119.99852 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00432 * 179.71953 * 14 13 12 17 17 C 1.50703 * 115.54421 * 34.69691 * 16 14 13 18 18 O 1.21283 * 120.00176 * 145.58338 * 17 16 14 19 19 N 1.34776 * 120.00093 * 325.57704 * 17 16 14 20 20 C 1.46505 * 119.99816 * 180.02562 * 19 17 16 21 21 C 1.52998 * 117.49910 * 223.62200 * 20 19 17 22 22 C 1.52994 * 60.00406 * 252.51570 * 21 20 19 23 23 C 1.53002 * 117.50414 * 249.02643 * 16 14 13 24 24 C 1.52997 * 117.50207 * 180.36312 * 16 14 13 25 25 H 0.97001 * 120.00074 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47145 * 60.00160 * 9 7 2 27 27 H 1.09001 * 109.47167 * 299.99920 * 9 7 2 28 28 H 1.09007 * 109.46964 * 60.00233 * 11 10 9 29 29 H 1.09004 * 109.47483 * 300.00743 * 11 10 9 30 30 H 1.08997 * 109.46911 * 305.00446 * 12 11 10 31 31 H 1.08997 * 109.46745 * 185.00455 * 12 11 10 32 32 H 0.96997 * 119.99982 * 0.02562 * 19 17 16 33 33 H 1.08996 * 115.55249 * 9.33757 * 20 19 17 34 34 H 1.09011 * 117.49972 * 0.02562 * 21 20 19 35 35 H 1.08997 * 117.50136 * 145.02258 * 21 20 19 36 36 H 1.08994 * 117.50178 * 252.51439 * 22 21 20 37 37 H 1.09000 * 117.50079 * 107.48853 * 22 21 20 38 38 H 1.08995 * 117.49660 * 359.97438 * 23 16 14 39 39 H 1.08997 * 117.49791 * 145.01695 * 23 16 14 40 40 H 1.08999 * 117.49888 * 214.98700 * 24 16 14 41 41 H 1.08998 * 117.49905 * 359.97438 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5650 -4.8754 0.0011 12 6 2.6480 -5.9562 0.0017 13 8 3.3991 -5.8881 1.2425 14 6 4.3931 -6.7757 1.4027 15 8 4.6281 -7.5827 0.5346 16 6 5.2204 -6.7614 2.6621 17 6 4.4806 -6.3901 3.9215 18 8 4.7831 -6.9055 4.9769 19 7 3.4828 -5.4853 3.8750 20 6 2.7640 -5.1239 5.0993 21 6 1.2401 -5.0151 5.0179 22 6 2.0915 -3.7503 5.1444 23 6 6.6801 -6.3186 2.5437 24 6 6.3441 -7.7930 2.7810 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 0.9446 -4.9827 -0.8887 29 1 0.9450 -4.9822 0.8913 30 1 3.3216 -5.7960 -0.8401 31 1 2.1819 -6.9375 -0.0875 32 1 3.2407 -5.0733 3.0309 33 1 3.1929 -5.5049 6.0261 34 1 0.7722 -5.2128 4.0534 35 1 0.6660 -5.3248 5.8911 36 1 2.0777 -3.2279 6.1009 37 1 2.1840 -3.1155 4.2631 38 1 7.0422 -6.0379 1.5547 39 1 7.1054 -5.7590 3.3767 40 1 6.5484 -8.2028 3.7702 41 1 6.4846 -8.4823 1.9485 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815206607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:23 Heat of formation + Delta-G solvation = -137.022496 kcal Electronic energy + Delta-G solvation = -24488.645560 eV Core-core repulsion = 20755.947234 eV Total energy + Delta-G solvation = -3732.698327 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.23979 -40.75119 -39.01581 -38.39598 -37.69558 -36.76958 -34.94024 -33.88877 -31.76448 -29.09646 -27.30820 -24.65900 -24.34876 -23.66040 -23.31622 -23.28638 -22.14313 -21.20915 -19.70656 -18.70715 -18.27037 -18.00264 -17.49733 -17.17052 -16.85614 -16.41610 -16.31095 -15.81889 -15.74287 -15.53931 -15.28967 -14.77199 -14.34262 -14.10037 -13.79352 -13.64158 -13.19794 -12.94453 -12.73010 -12.63377 -12.58251 -12.53157 -12.44681 -12.41684 -12.04439 -11.88355 -11.80366 -11.66481 -11.46799 -11.28947 -11.07538 -10.88669 -10.26929 -9.82982 -8.31241 -6.42732 0.73600 1.11629 1.41352 1.42639 1.44452 1.52892 1.95127 2.34256 2.52946 2.94460 3.03245 3.03417 3.25514 3.34688 3.53538 3.69157 3.79286 3.88622 4.00403 4.02877 4.08697 4.36661 4.43651 4.52305 4.54280 4.62695 4.73140 4.75195 4.81495 4.86738 5.00470 5.03270 5.17004 5.18418 5.20886 5.41816 5.55169 5.96153 6.34456 6.43101 6.50915 6.80037 6.99752 7.28766 8.80306 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.013735 B = 0.004278 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.056518 B = 6543.111838 C = 7268.883759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.012 3.988 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.210 3.790 10 O -0.405 6.405 11 C 0.053 3.947 12 C 0.080 3.920 13 O -0.356 6.356 14 C 0.506 3.494 15 O -0.515 6.515 16 C -0.205 4.205 17 C 0.561 3.439 18 O -0.560 6.560 19 N -0.689 5.689 20 C 0.062 3.938 21 C -0.183 4.183 22 C -0.185 4.185 23 C -0.104 4.104 24 C -0.094 4.094 25 H 0.270 0.730 26 H -0.010 1.010 27 H -0.008 1.008 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.414 0.586 33 H 0.139 0.861 34 H 0.089 0.911 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.083 0.917 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.808 -12.957 7.187 16.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.187 4.187 3 Si 0.799 3.201 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.078 0.922 9 C 0.135 3.865 10 O -0.325 6.325 11 C -0.024 4.024 12 C 0.007 3.993 13 O -0.273 6.273 14 C 0.349 3.651 15 O -0.404 6.404 16 C -0.210 4.210 17 C 0.347 3.653 18 O -0.440 6.440 19 N -0.341 5.341 20 C -0.043 4.043 21 C -0.221 4.221 22 C -0.223 4.223 23 C -0.141 4.141 24 C -0.131 4.131 25 H 0.079 0.921 26 H 0.007 0.993 27 H 0.009 0.991 28 H 0.101 0.899 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.128 0.872 32 H 0.254 0.746 33 H 0.157 0.843 34 H 0.107 0.893 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.102 0.898 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.072 -13.388 7.616 17.390 hybrid contribution -0.743 1.062 -0.789 1.518 sum 7.328 -12.326 6.827 15.882 Atomic orbital electron populations 1.70039 1.07593 1.28629 1.50396 1.25838 0.95849 1.03018 0.94001 0.85346 0.78213 0.77265 0.79313 1.19204 1.20146 1.19086 1.21320 0.94028 0.90830 1.52296 0.92153 1.19837 0.88479 0.84259 0.93886 1.87864 1.35320 1.13960 1.95333 1.22649 0.94337 0.83425 1.01984 1.23318 0.93145 0.99416 0.83449 1.86300 1.44050 1.54416 1.42519 1.22220 0.78387 0.77508 0.86969 1.90648 1.68015 1.38243 1.43471 1.21199 0.92925 1.16832 0.90000 1.19106 0.79491 0.78421 0.88286 1.90665 1.67325 1.54673 1.31336 1.45728 1.34371 1.42062 1.11982 1.21758 0.92210 1.00928 0.89426 1.23471 0.92906 1.01352 1.04383 1.23416 1.03433 0.90892 1.04556 1.23406 0.85773 0.98547 1.06410 1.23328 0.91048 0.92453 1.06312 0.92089 0.99263 0.99067 0.89941 0.92485 0.90229 0.87249 0.74581 0.84310 0.89275 0.85802 0.85841 0.89808 0.85601 0.85264 0.85310 0.85504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.71 13.29 21.45 0.28 -53.43 16 2 C 0.01 0.66 5.46 84.66 0.46 1.13 16 3 Si 0.98 42.95 29.54 68.60 2.03 44.98 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 7 C -0.55 -31.15 9.43 25.60 0.24 -30.91 16 8 H 0.06 3.42 7.81 -2.91 -0.02 3.39 16 9 C 0.21 11.07 5.69 71.24 0.41 11.48 16 10 O -0.40 -18.18 10.30 -145.58 -1.50 -19.67 16 11 C 0.05 1.72 6.33 71.98 0.46 2.18 16 12 C 0.08 2.20 5.85 71.98 0.42 2.62 16 13 O -0.36 -10.49 7.29 -48.69 -0.35 -10.84 16 14 C 0.51 14.05 7.48 71.23 0.53 14.58 16 15 O -0.51 -15.46 16.01 21.94 0.35 -15.11 16 16 C -0.21 -4.96 2.56 -53.67 -0.14 -5.10 16 17 C 0.56 15.70 7.38 87.66 0.65 16.35 16 18 O -0.56 -17.67 15.82 -3.04 -0.05 -17.72 16 19 N -0.69 -19.22 5.38 -442.52 -2.38 -21.60 16 20 C 0.06 1.56 6.43 44.99 0.29 1.85 16 21 C -0.18 -4.14 10.46 30.59 0.32 -3.82 16 22 C -0.18 -4.49 10.46 30.59 0.32 -4.17 16 23 C -0.10 -1.86 9.94 30.62 0.30 -1.55 16 24 C -0.09 -1.73 9.56 30.62 0.29 -1.44 16 25 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 26 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 27 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 28 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 29 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.08 2.24 8.13 -2.39 -0.02 2.22 16 31 H 0.11 2.42 8.13 -2.39 -0.02 2.40 16 32 H 0.41 12.29 5.99 -92.71 -0.56 11.73 16 33 H 0.14 3.40 7.40 -2.39 -0.02 3.38 16 34 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 35 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.13 2.24 7.67 -2.39 -0.02 2.22 16 41 H 0.13 2.15 7.67 -2.39 -0.02 2.13 16 Total: -1.00 -68.28 358.51 3.42 -64.86 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: 0.48 Total: 25.36 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 4.55 Total: 3.18 kcal Atomic # 7 Polarization: -72.93 SS G_CDS: -2.10 Total: -75.03 kcal Atomic # 8 Polarization: -61.79 SS G_CDS: -1.55 Total: -63.35 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -68.28 3.42 -64.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815206607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.163 kcal (2) G-P(sol) polarization free energy of solvation -68.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds