Wall clock time and date at job start Tue Mar 31 2020 04:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46907 * 109.47212 * 2 1 4 4 C 1.46891 * 111.00147 * 287.99070 * 3 2 1 5 5 C 1.50694 * 109.47344 * 160.33947 * 4 3 2 6 6 H 1.08010 * 120.00013 * 4.91209 * 5 4 3 7 7 C 1.37874 * 120.00519 * 184.91299 * 5 4 3 8 8 N 1.31517 * 120.00402 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99809 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47559 * 89.99687 * 9 7 5 11 11 H 1.48505 * 109.47328 * 209.99819 * 9 7 5 12 12 H 1.48511 * 109.46904 * 329.99380 * 9 7 5 13 13 C 1.46900 * 110.99832 * 164.03359 * 3 2 1 14 14 N 1.46508 * 109.46976 * 278.95594 * 13 3 2 15 15 C 1.35058 * 125.56717 * 90.02838 * 14 13 3 16 16 O 1.21304 * 127.28227 * 359.97030 * 15 14 13 17 17 C 1.49978 * 105.43232 * 179.97438 * 15 14 13 18 18 O 1.21294 * 127.28403 * 180.02562 * 17 15 14 19 19 N 1.35057 * 105.43050 * 0.02562 * 17 15 14 20 20 C 1.46500 * 125.56823 * 179.73206 * 19 17 15 21 21 C 1.53004 * 109.47126 * 300.02743 * 20 19 17 22 22 C 1.53012 * 109.46960 * 60.02214 * 20 19 17 23 23 C 1.34277 * 125.56277 * 269.97033 * 14 13 3 24 24 O 1.21481 * 124.30269 * 0.06921 * 23 14 13 25 25 H 1.09006 * 109.47266 * 59.24394 * 1 2 3 26 26 H 1.08991 * 109.47079 * 179.24772 * 1 2 3 27 27 H 1.09004 * 109.46821 * 299.25096 * 1 2 3 28 28 H 1.09003 * 109.47050 * 240.00254 * 2 1 3 29 29 H 1.08999 * 109.47114 * 120.00396 * 2 1 3 30 30 H 1.09005 * 109.47300 * 280.33909 * 4 3 2 31 31 H 1.09002 * 109.47289 * 40.33902 * 4 3 2 32 32 H 0.96995 * 119.99904 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.47043 * 158.96033 * 13 3 2 34 34 H 1.08994 * 109.47364 * 38.95437 * 13 3 2 35 35 H 1.08998 * 109.47847 * 180.02562 * 20 19 17 36 36 H 1.09000 * 109.47337 * 59.99582 * 21 20 19 37 37 H 1.09000 * 109.47202 * 179.97438 * 21 20 19 38 38 H 1.09003 * 109.46611 * 299.99332 * 21 20 19 39 39 H 1.09000 * 109.47187 * 300.00224 * 22 20 19 40 40 H 1.08993 * 109.46663 * 60.00144 * 22 20 19 41 41 H 1.09000 * 109.46924 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7959 2.0226 -1.3043 5 6 1.8467 3.5204 -1.1467 6 1 2.1055 3.9545 -0.1921 7 6 1.5628 4.3367 -2.2209 8 7 1.6067 5.6439 -2.0831 9 14 1.1146 3.5861 -3.8716 10 1 -0.3562 3.3952 -3.9456 11 1 1.5515 4.4934 -4.9631 12 1 1.7922 2.2728 -4.0185 13 6 3.4383 1.4418 0.3772 14 7 3.5589 1.3718 1.8357 15 6 3.6833 0.2388 2.5602 16 8 3.7163 -0.8999 2.1435 17 6 3.7718 0.6864 3.9889 18 8 3.8921 -0.0137 4.9721 19 7 3.6894 2.0339 3.9491 20 6 3.7249 2.9245 5.1117 21 6 2.5607 2.5896 6.0464 22 6 5.0477 2.7371 5.8575 23 6 3.5650 2.4238 2.6702 24 8 3.4686 3.5811 2.3136 25 1 -0.3634 0.5256 -0.8832 26 1 -0.3633 -1.0275 -0.0135 27 1 -0.3633 0.5022 0.8967 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.5704 1.7042 -2.0021 31 1 0.8185 1.7306 -1.6885 32 1 1.4066 6.2182 -2.8388 33 1 3.8718 2.3764 0.0213 34 1 3.9676 0.6015 -0.0718 35 1 3.6382 3.9591 4.7798 36 1 2.6473 1.5550 6.3784 37 1 2.5874 3.2520 6.9117 38 1 1.6183 2.7232 5.5151 39 1 5.1343 1.7025 6.1895 40 1 5.8770 2.9756 5.1917 41 1 5.0739 3.3994 6.7228 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064111100.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:50 Heat of formation + Delta-G solvation = -45.108993 kcal Electronic energy + Delta-G solvation = -25445.879617 eV Core-core repulsion = 21749.459710 eV Total energy + Delta-G solvation = -3696.419907 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.24238 -39.13967 -39.09806 -37.15887 -36.37676 -35.73386 -32.75107 -32.47955 -30.30582 -28.08699 -27.50992 -26.22031 -24.81364 -23.22867 -22.44405 -21.66551 -20.68508 -20.02071 -17.65431 -17.57196 -17.13337 -16.80136 -16.28400 -15.93926 -15.30640 -15.24121 -14.49226 -14.46995 -14.38701 -14.21208 -13.81409 -13.68634 -13.39721 -13.03266 -12.60841 -12.47810 -12.41265 -12.28938 -12.00221 -11.68216 -11.47273 -11.45278 -11.27530 -10.99751 -10.73877 -10.59831 -10.43563 -10.00773 -9.96292 -9.95267 -9.85031 -9.30945 -8.59759 -7.73668 -6.06503 -4.05325 0.35227 1.86874 2.15745 2.54248 2.78333 3.24904 3.32710 3.33674 3.94612 4.37991 4.40021 4.51278 4.71576 4.82226 4.93104 5.08300 5.23093 5.32681 5.33207 5.42189 5.50748 5.52515 5.61889 5.71521 5.76674 5.82541 5.91459 5.93711 6.04012 6.11939 6.31177 6.57130 6.61582 6.64148 6.73615 6.87882 7.22194 7.47644 7.62696 7.77860 7.79889 8.58189 9.08824 9.53363 11.06274 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.018868 B = 0.004974 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.622662 B = 5627.821900 C = 6524.783798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.042 3.958 3 N -0.540 5.540 4 C 0.168 3.832 5 C -0.515 4.515 6 H 0.089 0.911 7 C 0.072 3.928 8 N -0.894 5.894 9 Si 0.870 3.130 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.290 3.710 14 N -0.557 5.557 15 C 0.505 3.495 16 O -0.425 6.425 17 C 0.510 3.490 18 O -0.425 6.425 19 N -0.572 5.572 20 C 0.143 3.857 21 C -0.169 4.169 22 C -0.168 4.168 23 C 0.705 3.295 24 O -0.457 6.457 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.031 0.969 29 H 0.065 0.935 30 H -0.006 1.006 31 H 0.035 0.965 32 H 0.264 0.736 33 H 0.128 0.872 34 H 0.071 0.929 35 H 0.116 0.884 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.769 -8.333 12.836 16.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 N -0.266 5.266 4 C 0.043 3.957 5 C -0.553 4.553 6 H 0.107 0.893 7 C -0.130 4.130 8 N -0.532 5.532 9 Si 0.697 3.303 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.193 1.193 13 C 0.080 3.920 14 N -0.307 5.307 15 C 0.286 3.714 16 O -0.291 6.291 17 C 0.291 3.709 18 O -0.291 6.291 19 N -0.323 5.323 20 C 0.043 3.957 21 C -0.226 4.226 22 C -0.225 4.225 23 C 0.407 3.593 24 O -0.322 6.322 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.012 0.988 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.146 0.854 34 H 0.089 0.911 35 H 0.134 0.866 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.496 -8.204 13.137 16.127 hybrid contribution 0.002 -0.672 -1.581 1.718 sum 4.498 -8.876 11.555 15.249 Atomic orbital electron populations 1.21740 0.94965 1.00414 1.02946 1.22230 0.96586 0.89601 1.00194 1.61603 1.15179 1.15463 1.34319 1.20205 0.96038 0.96154 0.83328 1.21096 1.47144 0.87762 0.99311 0.89318 1.24877 0.95100 0.94690 0.98341 1.69899 1.49158 1.02843 1.31337 0.86958 0.79264 0.79476 0.84579 1.20162 1.21146 1.19315 1.22213 0.91772 1.04578 0.73415 1.47107 1.66257 1.06700 1.10596 1.20946 0.76762 0.85582 0.88153 1.90797 1.42241 1.19001 1.77053 1.20967 0.76447 0.82660 0.90856 1.90772 1.41395 1.59654 1.37316 1.46999 1.68152 1.08481 1.08633 1.21408 0.97074 0.94243 0.82966 1.22203 0.97538 1.03439 0.99457 1.22202 0.95733 1.03759 1.00844 1.15994 0.77387 0.85708 0.80207 1.91123 1.47295 1.16173 1.77631 0.92086 0.93103 0.92278 0.95027 0.91678 0.98819 0.94720 0.92646 0.85430 0.91101 0.86627 0.91189 0.90133 0.91522 0.91150 0.91745 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.99 37.16 0.37 -1.90 16 2 C 0.04 0.71 5.53 -3.82 -0.02 0.69 16 3 N -0.54 -10.66 4.48 -239.98 -1.07 -11.73 16 4 C 0.17 3.81 3.60 -4.98 -0.02 3.79 16 5 C -0.51 -14.05 9.07 -34.44 -0.31 -14.36 16 6 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 7 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 8 N -0.89 -26.90 13.96 55.43 0.77 -26.12 16 9 Si 0.87 20.69 27.37 -169.99 -4.65 16.03 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.07 6.69 56.52 0.38 -5.70 16 13 C 0.29 5.09 5.46 -63.31 -0.35 4.75 16 14 N -0.56 -8.94 2.87 -124.52 -0.36 -9.29 16 15 C 0.51 7.57 7.59 -11.21 -0.09 7.49 16 16 O -0.42 -6.93 16.33 5.54 0.09 -6.84 16 17 C 0.51 6.97 7.65 -11.21 -0.09 6.89 16 18 O -0.43 -6.12 15.83 5.54 0.09 -6.03 16 19 N -0.57 -7.52 2.54 -114.07 -0.29 -7.81 16 20 C 0.14 1.49 3.46 -67.92 -0.23 1.25 16 21 C -0.17 -1.53 9.22 37.16 0.34 -1.19 16 22 C -0.17 -1.41 9.22 37.16 0.34 -1.06 16 23 C 0.70 11.41 8.32 -87.81 -0.73 10.68 16 24 O -0.46 -9.05 17.03 5.38 0.09 -8.96 16 25 H 0.06 1.03 6.52 -51.93 -0.34 0.69 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.03 0.52 8.05 -51.93 -0.42 0.10 16 29 H 0.06 1.08 5.46 -51.93 -0.28 0.79 16 30 H -0.01 -0.13 7.40 -51.93 -0.38 -0.51 16 31 H 0.03 0.79 5.39 -51.93 -0.28 0.51 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.13 2.46 7.08 -51.93 -0.37 2.10 16 34 H 0.07 1.10 7.87 -51.93 -0.41 0.69 16 35 H 0.12 1.21 7.60 -51.93 -0.39 0.82 16 36 H 0.07 0.69 7.05 -51.93 -0.37 0.33 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.65 7.04 -51.93 -0.37 0.29 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 340.56 15.07 5.13 5.13 Total: -1.00 -31.51 340.56 -6.80 -38.30 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -5.73 Total: -1.63 kcal Atomic # 6 Polarization: 19.82 SS G_CDS: -0.87 Total: 18.95 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.95 Total: -54.95 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: 0.27 Total: -21.83 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.65 Total: 16.03 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.51 -6.80 -38.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064111100.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.806 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds