Wall clock time and date at job start Tue Mar 31 2020 04:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46907 * 109.47212 * 2 1 4 4 C 1.46891 * 111.00147 * 287.99070 * 3 2 1 5 5 C 1.50694 * 109.47344 * 160.33947 * 4 3 2 6 6 H 1.08010 * 120.00013 * 4.91209 * 5 4 3 7 7 C 1.37874 * 120.00519 * 184.91299 * 5 4 3 8 8 N 1.31517 * 120.00402 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99809 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47559 * 89.99687 * 9 7 5 11 11 H 1.48505 * 109.47328 * 209.99819 * 9 7 5 12 12 H 1.48511 * 109.46904 * 329.99380 * 9 7 5 13 13 C 1.46900 * 110.99832 * 164.03359 * 3 2 1 14 14 N 1.46508 * 109.46976 * 278.95594 * 13 3 2 15 15 C 1.35058 * 125.56717 * 90.02838 * 14 13 3 16 16 O 1.21304 * 127.28227 * 359.97030 * 15 14 13 17 17 C 1.49978 * 105.43232 * 179.97438 * 15 14 13 18 18 O 1.21294 * 127.28403 * 180.02562 * 17 15 14 19 19 N 1.35057 * 105.43050 * 0.02562 * 17 15 14 20 20 C 1.46500 * 125.56823 * 179.73206 * 19 17 15 21 21 C 1.53004 * 109.47126 * 300.02743 * 20 19 17 22 22 C 1.53012 * 109.46960 * 60.02214 * 20 19 17 23 23 C 1.34277 * 125.56277 * 269.97033 * 14 13 3 24 24 O 1.21481 * 124.30269 * 0.06921 * 23 14 13 25 25 H 1.09006 * 109.47266 * 59.24394 * 1 2 3 26 26 H 1.08991 * 109.47079 * 179.24772 * 1 2 3 27 27 H 1.09004 * 109.46821 * 299.25096 * 1 2 3 28 28 H 1.09003 * 109.47050 * 240.00254 * 2 1 3 29 29 H 1.08999 * 109.47114 * 120.00396 * 2 1 3 30 30 H 1.09005 * 109.47300 * 280.33909 * 4 3 2 31 31 H 1.09002 * 109.47289 * 40.33902 * 4 3 2 32 32 H 0.96995 * 119.99904 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.47043 * 158.96033 * 13 3 2 34 34 H 1.08994 * 109.47364 * 38.95437 * 13 3 2 35 35 H 1.08998 * 109.47847 * 180.02562 * 20 19 17 36 36 H 1.09000 * 109.47337 * 59.99582 * 21 20 19 37 37 H 1.09000 * 109.47202 * 179.97438 * 21 20 19 38 38 H 1.09003 * 109.46611 * 299.99332 * 21 20 19 39 39 H 1.09000 * 109.47187 * 300.00224 * 22 20 19 40 40 H 1.08993 * 109.46663 * 60.00144 * 22 20 19 41 41 H 1.09000 * 109.46924 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7959 2.0226 -1.3043 5 6 1.8467 3.5204 -1.1467 6 1 2.1055 3.9545 -0.1921 7 6 1.5628 4.3367 -2.2209 8 7 1.6067 5.6439 -2.0831 9 14 1.1146 3.5861 -3.8716 10 1 -0.3562 3.3952 -3.9456 11 1 1.5515 4.4934 -4.9631 12 1 1.7922 2.2728 -4.0185 13 6 3.4383 1.4418 0.3772 14 7 3.5589 1.3718 1.8357 15 6 3.6833 0.2388 2.5602 16 8 3.7163 -0.8999 2.1435 17 6 3.7718 0.6864 3.9889 18 8 3.8921 -0.0137 4.9721 19 7 3.6894 2.0339 3.9491 20 6 3.7249 2.9245 5.1117 21 6 2.5607 2.5896 6.0464 22 6 5.0477 2.7371 5.8575 23 6 3.5650 2.4238 2.6702 24 8 3.4686 3.5811 2.3136 25 1 -0.3634 0.5256 -0.8832 26 1 -0.3633 -1.0275 -0.0135 27 1 -0.3633 0.5022 0.8967 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.5704 1.7042 -2.0021 31 1 0.8185 1.7306 -1.6885 32 1 1.4066 6.2182 -2.8388 33 1 3.8718 2.3764 0.0213 34 1 3.9676 0.6015 -0.0718 35 1 3.6382 3.9591 4.7798 36 1 2.6473 1.5550 6.3784 37 1 2.5874 3.2520 6.9117 38 1 1.6183 2.7232 5.5151 39 1 5.1343 1.7025 6.1895 40 1 5.8770 2.9756 5.1917 41 1 5.0739 3.3994 6.7228 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064111100.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:50 Heat of formation + Delta-G solvation = -66.992234 kcal Electronic energy + Delta-G solvation = -25446.828546 eV Core-core repulsion = 21749.459710 eV Total energy + Delta-G solvation = -3697.368835 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.49330 -40.40372 -40.37283 -38.63923 -37.66375 -36.89684 -34.69213 -33.70036 -31.78740 -29.79060 -28.22550 -27.56776 -26.23180 -24.41353 -24.10545 -22.96192 -21.79555 -21.52239 -19.05654 -18.88393 -18.73189 -18.29095 -17.60163 -17.06175 -16.85713 -16.54780 -16.02809 -15.79652 -15.78294 -15.28505 -15.22671 -15.10641 -14.50504 -14.31248 -14.13146 -13.85865 -13.71079 -13.34226 -13.09353 -12.99289 -12.78248 -12.64867 -12.47501 -12.31878 -12.25886 -12.07836 -12.00047 -11.74280 -11.50855 -11.25478 -11.14584 -11.03215 -10.72605 -9.28455 -8.21868 -6.26017 -0.88938 0.66260 0.92454 1.34337 1.39097 1.39777 1.47597 1.50001 2.37984 2.69895 3.01372 3.14101 3.41991 3.74316 3.93236 3.94653 4.02820 4.09021 4.21461 4.24065 4.38951 4.42420 4.60938 4.67502 4.73851 4.81563 4.82873 4.85107 4.96944 4.99465 5.08931 5.20327 5.22452 5.28232 5.42873 5.57544 5.62006 5.91905 6.02386 6.13958 6.46381 6.58552 6.85563 7.36750 8.94954 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.018868 B = 0.004974 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.622662 B = 5627.821900 C = 6524.783798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.044 3.956 3 N -0.559 5.559 4 C 0.179 3.821 5 C -0.514 4.514 6 H 0.039 0.961 7 C 0.010 3.990 8 N -0.948 5.948 9 Si 0.944 3.056 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.244 1.244 13 C 0.293 3.707 14 N -0.560 5.560 15 C 0.512 3.488 16 O -0.431 6.431 17 C 0.523 3.477 18 O -0.423 6.423 19 N -0.561 5.561 20 C 0.131 3.869 21 C -0.162 4.162 22 C -0.160 4.160 23 C 0.710 3.290 24 O -0.501 6.501 25 H 0.049 0.951 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.005 0.995 31 H 0.042 0.958 32 H 0.265 0.735 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.064 0.936 37 H 0.109 0.891 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.715 -10.632 13.042 17.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.084 4.084 3 N -0.286 5.286 4 C 0.053 3.947 5 C -0.553 4.553 6 H 0.057 0.943 7 C -0.188 4.188 8 N -0.589 5.589 9 Si 0.767 3.233 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.167 1.167 13 C 0.083 3.917 14 N -0.309 5.309 15 C 0.293 3.707 16 O -0.298 6.298 17 C 0.304 3.696 18 O -0.290 6.290 19 N -0.311 5.311 20 C 0.033 3.967 21 C -0.220 4.220 22 C -0.217 4.217 23 C 0.413 3.587 24 O -0.369 6.369 25 H 0.068 0.932 26 H 0.099 0.901 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.022 0.978 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.130 0.870 36 H 0.083 0.917 37 H 0.128 0.872 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.456 -10.554 13.399 17.628 hybrid contribution 0.053 0.048 -1.493 1.495 sum 4.509 -10.506 11.906 16.506 Atomic orbital electron populations 1.21734 0.94157 1.02066 1.01819 1.22292 0.97233 0.87790 1.01048 1.61446 1.16682 1.17480 1.32966 1.19934 0.96570 0.93121 0.85086 1.21268 1.46099 0.90610 0.97290 0.94273 1.25819 0.95111 0.94937 1.02904 1.70078 1.51195 1.04783 1.32801 0.85778 0.79361 0.79416 0.78722 1.19325 1.21199 1.16696 1.22086 0.90923 1.04352 0.74303 1.47008 1.66398 1.07222 1.10234 1.21054 0.76084 0.85017 0.88540 1.90792 1.42446 1.19158 1.77403 1.20581 0.76368 0.82596 0.90067 1.90786 1.41472 1.59609 1.37084 1.47080 1.67292 1.08597 1.08150 1.21811 0.99046 0.93584 0.82307 1.22188 0.96141 1.03804 0.99875 1.22178 0.94118 1.04050 1.01402 1.16086 0.76493 0.85064 0.81035 1.91107 1.49482 1.17877 1.78451 0.93226 0.90069 0.93344 0.93608 0.91161 0.97766 0.94018 0.92621 0.88017 0.88476 0.86974 0.91675 0.87236 0.92807 0.91709 0.92074 0.87330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 9.99 71.98 0.72 -3.42 16 2 C 0.04 1.38 5.53 86.30 0.48 1.86 16 3 N -0.56 -21.80 4.48 -913.16 -4.09 -25.89 16 4 C 0.18 7.99 3.60 85.56 0.31 8.30 16 5 C -0.51 -28.86 9.07 25.60 0.23 -28.62 16 6 H 0.04 2.54 8.06 -2.91 -0.02 2.52 16 7 C 0.01 0.54 5.47 84.65 0.46 1.01 16 8 N -0.95 -59.07 13.96 21.45 0.30 -58.77 16 9 Si 0.94 42.45 27.37 68.60 1.88 44.33 16 10 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 12 H -0.24 -9.90 6.69 99.48 0.67 -9.24 16 13 C 0.29 10.29 5.46 170.80 0.93 11.22 16 14 N -0.56 -17.93 2.87 -784.66 -2.25 -20.18 16 15 C 0.51 14.76 7.59 87.39 0.66 15.42 16 16 O -0.43 -13.26 16.33 -3.10 -0.05 -13.31 16 17 C 0.52 13.70 7.65 87.39 0.67 14.37 16 18 O -0.42 -11.42 15.83 -3.07 -0.05 -11.47 16 19 N -0.56 -14.56 2.54 -751.61 -1.91 -16.47 16 20 C 0.13 2.61 3.46 45.00 0.16 2.77 16 21 C -0.16 -2.72 9.22 71.98 0.66 -2.06 16 22 C -0.16 -2.40 9.22 71.99 0.66 -1.74 16 23 C 0.71 23.53 8.32 179.37 1.49 25.03 16 24 O -0.50 -20.95 17.03 -3.65 -0.06 -21.01 16 25 H 0.05 1.57 6.52 -2.38 -0.02 1.56 16 26 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.05 1.34 8.05 -2.39 -0.02 1.32 16 29 H 0.07 2.16 5.46 -2.39 -0.01 2.15 16 30 H 0.00 0.20 7.40 -2.38 -0.02 0.18 16 31 H 0.04 1.82 5.39 -2.39 -0.01 1.81 16 32 H 0.26 15.42 8.31 -92.71 -0.77 14.64 16 33 H 0.10 4.10 7.08 -2.39 -0.02 4.08 16 34 H 0.10 2.87 7.87 -2.39 -0.02 2.85 16 35 H 0.11 2.35 7.60 -2.39 -0.02 2.33 16 36 H 0.06 1.17 7.05 -2.39 -0.02 1.15 16 37 H 0.11 1.20 8.14 -2.39 -0.02 1.19 16 38 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.06 1.07 7.04 -2.39 -0.02 1.05 16 40 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.11 1.04 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -69.96 340.56 2.21 -67.75 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 1.00 Total: 10.89 kcal Atomic # 6 Polarization: 36.69 SS G_CDS: 7.44 Total: 44.12 kcal Atomic # 7 Polarization: -113.36 SS G_CDS: -7.95 Total: -121.30 kcal Atomic # 8 Polarization: -45.63 SS G_CDS: -0.16 Total: -45.79 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 1.88 Total: 44.33 kcal Total: -69.96 2.21 -67.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064111100.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.760 kcal (2) G-P(sol) polarization free energy of solvation -69.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds