Wall clock time and date at job start Tue Mar 31 2020 05:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00149 * 2 1 4 4 H 1.48508 * 109.46744 * 269.99880 * 3 2 1 5 5 H 1.48501 * 109.46916 * 29.99526 * 3 2 1 6 6 H 1.48496 * 109.47094 * 149.99647 * 3 2 1 7 7 C 1.37876 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99833 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00168 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.47166 * 179.97438 * 9 7 2 11 11 C 1.46496 * 120.00088 * 89.99544 * 10 9 7 12 12 C 1.53000 * 109.46913 * 269.99628 * 11 10 9 13 13 N 1.46906 * 109.47072 * 180.02562 * 12 11 10 14 14 C 1.47020 * 110.99867 * 293.63551 * 13 12 11 15 15 C 1.53097 * 109.25663 * 177.60414 * 14 13 12 16 16 O 1.43021 * 109.25605 * 56.85187 * 15 14 13 17 17 C 1.43021 * 113.73613 * 301.32802 * 16 15 14 18 18 C 1.47009 * 111.00252 * 170.00094 * 13 12 11 19 19 C 1.34782 * 119.99430 * 269.98965 * 10 9 7 20 20 O 1.21586 * 119.99670 * 179.97438 * 19 10 9 21 21 N 1.34774 * 119.99890 * 0.02562 * 19 10 9 22 22 C 1.46503 * 119.99449 * 179.97438 * 21 19 10 23 23 C 1.52999 * 117.49906 * 223.61556 * 22 21 19 24 24 C 1.52995 * 60.00234 * 252.51520 * 23 22 21 25 25 H 0.96999 * 119.99705 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47453 * 59.99372 * 9 7 2 27 27 H 1.09003 * 109.46373 * 299.99337 * 9 7 2 28 28 H 1.09002 * 109.46789 * 150.00188 * 11 10 9 29 29 H 1.08996 * 109.47292 * 29.99871 * 11 10 9 30 30 H 1.08993 * 109.47007 * 60.00408 * 12 11 10 31 31 H 1.08996 * 109.47340 * 300.00213 * 12 11 10 32 32 H 1.08998 * 109.50492 * 297.54142 * 14 13 12 33 33 H 1.09007 * 109.50106 * 57.67293 * 14 13 12 34 34 H 1.08995 * 109.50808 * 296.91455 * 15 14 13 35 35 H 1.08995 * 109.54142 * 176.80219 * 15 14 13 36 36 H 1.08995 * 109.50535 * 298.73468 * 17 16 15 37 37 H 1.09001 * 109.53535 * 178.62697 * 17 16 15 38 38 H 1.08999 * 109.50465 * 302.33238 * 18 13 12 39 39 H 1.08998 * 109.50618 * 62.41050 * 18 13 12 40 40 H 0.96999 * 120.00432 * 359.97438 * 21 19 10 41 41 H 1.09005 * 115.55090 * 9.33532 * 22 21 19 42 42 H 1.08999 * 117.49627 * 0.02562 * 23 22 21 43 43 H 1.09007 * 117.49774 * 145.02135 * 23 22 21 44 44 H 1.09000 * 117.49828 * 252.51208 * 24 23 22 45 45 H 1.08999 * 117.52008 * 107.48075 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0022 11 6 4.2444 -3.2669 -1.2659 12 6 2.9695 -3.9884 -1.7074 13 7 3.2148 -4.6824 -2.9787 14 6 3.4591 -3.7219 -4.0646 15 6 3.7684 -4.4861 -5.3546 16 8 2.6852 -5.3723 -5.6492 17 6 2.4201 -6.3217 -4.6129 18 6 2.0972 -5.5761 -3.3154 19 6 4.2241 -3.2098 1.1701 20 8 4.6289 -4.3563 1.1710 21 7 3.9987 -2.5736 2.3366 22 6 4.2421 -3.2635 3.6060 23 6 3.1928 -3.1056 4.7083 24 6 4.5448 -2.4002 4.8324 25 1 -0.4850 0.8401 -0.0004 26 1 3.8746 -0.6800 0.8910 27 1 3.8751 -0.6806 -0.8890 28 1 5.0462 -3.9935 -1.1347 29 1 4.5327 -2.5408 -2.0260 30 1 2.1677 -3.2619 -1.8385 31 1 2.6812 -4.7145 -0.9473 32 1 2.5727 -3.1047 -4.2108 33 1 4.3066 -3.0873 -3.8054 34 1 4.6849 -5.0618 -5.2258 35 1 3.8944 -3.7801 -6.1754 36 1 3.2974 -6.9508 -4.4625 37 1 1.5708 -6.9433 -4.8966 38 1 1.9505 -6.2950 -2.5093 39 1 1.1889 -4.9886 -3.4488 40 1 3.6754 -1.6591 2.3359 41 1 4.7510 -4.2244 3.5288 42 1 2.3213 -2.4888 4.4889 43 1 3.0110 -3.9629 5.3565 44 1 5.2525 -2.7934 5.5623 45 1 4.5633 -1.3191 4.6947 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071908622.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:20 Heat of formation + Delta-G solvation = -31.432542 kcal Electronic energy + Delta-G solvation = -25130.607978 eV Core-core repulsion = 21570.614221 eV Total energy + Delta-G solvation = -3559.993757 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.74543 -39.25521 -37.06918 -35.89379 -34.79372 -32.60017 -32.21169 -31.10599 -29.53327 -27.84892 -25.82649 -23.91147 -22.87617 -22.19545 -22.17833 -21.07164 -20.17701 -19.38603 -17.44669 -17.00810 -16.42597 -16.20428 -16.03116 -15.10448 -14.96918 -14.81932 -14.78095 -14.40241 -14.20559 -13.89642 -13.51807 -13.27198 -12.85761 -12.46747 -12.43184 -12.24218 -11.94806 -11.86144 -11.41497 -11.31523 -11.28496 -11.21552 -10.93982 -10.82452 -10.57919 -10.33491 -10.27531 -10.14839 -9.69363 -9.59372 -9.47755 -8.80514 -8.33496 -8.15035 -7.68166 -6.28694 -4.30897 3.10016 3.16774 3.18540 3.24746 3.69665 3.86869 4.07032 4.18510 4.28580 4.60961 4.97938 5.00809 5.04865 5.13318 5.13776 5.20901 5.22817 5.25380 5.37830 5.51576 5.62650 5.68482 5.76170 5.77713 5.93069 5.93536 5.97131 6.05999 6.10211 6.15307 6.27641 6.34094 6.36517 6.49430 6.60505 7.08042 7.12219 7.14190 7.22905 7.28315 7.35999 7.69915 8.22893 8.61917 8.79009 9.24607 9.32558 10.83604 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.011615 B = 0.005077 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.153709 B = 5513.460196 C = 7156.614007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.076 3.924 3 Si 0.871 3.129 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.080 0.920 9 C 0.211 3.789 10 N -0.610 5.610 11 C 0.150 3.850 12 C 0.041 3.959 13 N -0.535 5.535 14 C 0.012 3.988 15 C 0.065 3.935 16 O -0.389 6.389 17 C 0.066 3.934 18 C 0.018 3.982 19 C 0.716 3.284 20 O -0.613 6.613 21 N -0.714 5.714 22 C 0.108 3.892 23 C -0.199 4.199 24 C -0.198 4.198 25 H 0.266 0.734 26 H 0.026 0.974 27 H 0.030 0.970 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.044 0.956 40 H 0.406 0.594 41 H 0.134 0.866 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.629 -5.646 -1.794 9.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.128 4.128 3 Si 0.697 3.303 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.098 0.902 9 C 0.089 3.911 10 N -0.344 5.344 11 C 0.025 3.975 12 C -0.088 4.088 13 N -0.261 5.261 14 C -0.116 4.116 15 C -0.012 4.012 16 O -0.308 6.308 17 C -0.011 4.011 18 C -0.110 4.110 19 C 0.418 3.582 20 O -0.494 6.494 21 N -0.368 5.368 22 C 0.000 4.000 23 C -0.238 4.238 24 C -0.236 4.236 25 H 0.077 0.923 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.076 0.924 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.062 0.938 40 H 0.244 0.756 41 H 0.152 0.848 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.073 -6.597 -1.954 10.607 hybrid contribution -0.706 2.118 0.299 2.253 sum 7.366 -4.479 -1.655 8.779 Atomic orbital electron populations 1.69892 1.06215 1.27200 1.49255 1.24903 0.94727 0.98846 0.94291 0.86944 0.80309 0.84072 0.78954 1.19918 1.20874 1.18974 1.21426 0.89042 0.94974 1.52491 0.90228 1.19722 0.95907 0.78333 0.97106 1.47006 1.68376 1.15389 1.03638 1.21017 0.96782 0.95645 0.84026 1.22592 0.98769 0.97694 0.89742 1.62198 1.40653 1.20350 1.02868 1.22847 1.02041 0.94892 0.91813 1.22663 0.89630 0.92467 0.96419 1.87953 1.53090 1.47502 1.42241 1.22645 1.01029 0.90815 0.86613 1.22736 0.92935 0.97036 0.98312 1.15688 0.78056 0.83935 0.80550 1.90819 1.54944 1.16883 1.86745 1.44599 1.71297 1.17688 1.03243 1.21288 1.01719 0.97784 0.79198 1.23433 0.93734 1.03463 1.03144 1.23367 0.99586 0.99501 1.01172 0.92346 0.95641 0.95187 0.90161 0.91426 0.92378 0.90727 0.93542 0.89443 0.92454 0.88741 0.92427 0.88766 0.89753 0.93803 0.75642 0.84849 0.88272 0.88470 0.88360 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.24 13.96 55.43 0.77 -24.47 16 2 C 0.08 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 19.25 27.47 -169.99 -4.67 14.58 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -5.49 6.54 56.52 0.37 -5.12 16 7 C -0.54 -13.71 9.47 -34.44 -0.33 -14.03 16 8 H 0.08 2.29 7.67 -52.48 -0.40 1.89 16 9 C 0.21 4.52 4.04 -5.19 -0.02 4.49 16 10 N -0.61 -12.39 2.46 -180.81 -0.44 -12.83 16 11 C 0.15 2.73 5.39 -4.04 -0.02 2.70 16 12 C 0.04 0.74 5.28 -3.82 -0.02 0.72 16 13 N -0.53 -8.37 4.73 -234.31 -1.11 -9.48 16 14 C 0.01 0.18 5.44 -3.71 -0.02 0.16 16 15 C 0.07 0.80 7.01 37.21 0.26 1.06 16 16 O -0.39 -5.42 10.83 -35.23 -0.38 -5.80 16 17 C 0.07 0.81 7.01 37.20 0.26 1.07 16 18 C 0.02 0.26 5.64 -3.72 -0.02 0.24 16 19 C 0.72 15.00 8.28 -86.92 -0.72 14.28 16 20 O -0.61 -14.02 15.49 5.29 0.08 -13.94 16 21 N -0.71 -13.24 5.43 -58.67 -0.32 -13.56 16 22 C 0.11 1.68 6.43 -67.93 -0.44 1.25 16 23 C -0.20 -2.69 10.46 -26.73 -0.28 -2.97 16 24 C -0.20 -2.45 10.45 -26.73 -0.28 -2.73 16 25 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.03 0.53 5.42 -51.93 -0.28 0.25 16 27 H 0.03 0.63 7.32 -51.93 -0.38 0.25 16 28 H 0.08 1.49 7.42 -51.93 -0.39 1.10 16 29 H 0.07 1.12 6.27 -51.93 -0.33 0.79 16 30 H 0.06 1.22 7.24 -51.93 -0.38 0.85 16 31 H 0.07 1.50 8.04 -51.93 -0.42 1.08 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 1.15 6.38 -51.93 -0.33 0.82 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 1.15 8.09 -51.93 -0.42 0.73 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.41 7.54 6.56 -40.82 -0.27 7.28 16 41 H 0.13 2.15 7.40 -51.93 -0.38 1.76 16 42 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 359.01 15.07 5.41 5.41 Total: -1.00 -30.08 359.01 -9.74 -39.83 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -7.37 Total: 12.12 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -1.72 Total: 8.14 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: -1.10 Total: -60.34 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.30 Total: -19.74 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.67 Total: 14.58 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.08 -9.74 -39.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071908622.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.395 kcal (2) G-P(sol) polarization free energy of solvation -30.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds