Wall clock time and date at job start Tue Mar 31 2020 05:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00149 * 2 1 4 4 H 1.48508 * 109.46744 * 269.99880 * 3 2 1 5 5 H 1.48501 * 109.46916 * 29.99526 * 3 2 1 6 6 H 1.48496 * 109.47094 * 149.99647 * 3 2 1 7 7 C 1.37876 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99833 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00168 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.47166 * 179.97438 * 9 7 2 11 11 C 1.46496 * 120.00088 * 89.99544 * 10 9 7 12 12 C 1.53000 * 109.46913 * 269.99628 * 11 10 9 13 13 N 1.46906 * 109.47072 * 180.02562 * 12 11 10 14 14 C 1.47020 * 110.99867 * 293.63551 * 13 12 11 15 15 C 1.53097 * 109.25663 * 177.60414 * 14 13 12 16 16 O 1.43021 * 109.25605 * 56.85187 * 15 14 13 17 17 C 1.43021 * 113.73613 * 301.32802 * 16 15 14 18 18 C 1.47009 * 111.00252 * 170.00094 * 13 12 11 19 19 C 1.34782 * 119.99430 * 269.98965 * 10 9 7 20 20 O 1.21586 * 119.99670 * 179.97438 * 19 10 9 21 21 N 1.34774 * 119.99890 * 0.02562 * 19 10 9 22 22 C 1.46503 * 119.99449 * 179.97438 * 21 19 10 23 23 C 1.52999 * 117.49906 * 223.61556 * 22 21 19 24 24 C 1.52995 * 60.00234 * 252.51520 * 23 22 21 25 25 H 0.96999 * 119.99705 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47453 * 59.99372 * 9 7 2 27 27 H 1.09003 * 109.46373 * 299.99337 * 9 7 2 28 28 H 1.09002 * 109.46789 * 150.00188 * 11 10 9 29 29 H 1.08996 * 109.47292 * 29.99871 * 11 10 9 30 30 H 1.08993 * 109.47007 * 60.00408 * 12 11 10 31 31 H 1.08996 * 109.47340 * 300.00213 * 12 11 10 32 32 H 1.08998 * 109.50492 * 297.54142 * 14 13 12 33 33 H 1.09007 * 109.50106 * 57.67293 * 14 13 12 34 34 H 1.08995 * 109.50808 * 296.91455 * 15 14 13 35 35 H 1.08995 * 109.54142 * 176.80219 * 15 14 13 36 36 H 1.08995 * 109.50535 * 298.73468 * 17 16 15 37 37 H 1.09001 * 109.53535 * 178.62697 * 17 16 15 38 38 H 1.08999 * 109.50465 * 302.33238 * 18 13 12 39 39 H 1.08998 * 109.50618 * 62.41050 * 18 13 12 40 40 H 0.96999 * 120.00432 * 359.97438 * 21 19 10 41 41 H 1.09005 * 115.55090 * 9.33532 * 22 21 19 42 42 H 1.08999 * 117.49627 * 0.02562 * 23 22 21 43 43 H 1.09007 * 117.49774 * 145.02135 * 23 22 21 44 44 H 1.09000 * 117.49828 * 252.51208 * 24 23 22 45 45 H 1.08999 * 117.52008 * 107.48075 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0022 11 6 4.2444 -3.2669 -1.2659 12 6 2.9695 -3.9884 -1.7074 13 7 3.2148 -4.6824 -2.9787 14 6 3.4591 -3.7219 -4.0646 15 6 3.7684 -4.4861 -5.3546 16 8 2.6852 -5.3723 -5.6492 17 6 2.4201 -6.3217 -4.6129 18 6 2.0972 -5.5761 -3.3154 19 6 4.2241 -3.2098 1.1701 20 8 4.6289 -4.3563 1.1710 21 7 3.9987 -2.5736 2.3366 22 6 4.2421 -3.2635 3.6060 23 6 3.1928 -3.1056 4.7083 24 6 4.5448 -2.4002 4.8324 25 1 -0.4850 0.8401 -0.0004 26 1 3.8746 -0.6800 0.8910 27 1 3.8751 -0.6806 -0.8890 28 1 5.0462 -3.9935 -1.1347 29 1 4.5327 -2.5408 -2.0260 30 1 2.1677 -3.2619 -1.8385 31 1 2.6812 -4.7145 -0.9473 32 1 2.5727 -3.1047 -4.2108 33 1 4.3066 -3.0873 -3.8054 34 1 4.6849 -5.0618 -5.2258 35 1 3.8944 -3.7801 -6.1754 36 1 3.2974 -6.9508 -4.4625 37 1 1.5708 -6.9433 -4.8966 38 1 1.9505 -6.2950 -2.5093 39 1 1.1889 -4.9886 -3.4488 40 1 3.6754 -1.6591 2.3359 41 1 4.7510 -4.2244 3.5288 42 1 2.3213 -2.4888 4.4889 43 1 3.0110 -3.9629 5.3565 44 1 5.2525 -2.7934 5.5623 45 1 4.5633 -1.3191 4.6947 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071908622.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:19 Heat of formation + Delta-G solvation = -53.017340 kcal Electronic energy + Delta-G solvation = -25131.543965 eV Core-core repulsion = 21570.614221 eV Total energy + Delta-G solvation = -3560.929744 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.27118 -40.45616 -38.33355 -37.26582 -36.37473 -34.54389 -33.64672 -32.19696 -31.06028 -29.56964 -27.13571 -25.03847 -24.61833 -23.67760 -23.23123 -22.37636 -21.37785 -20.94147 -19.17649 -18.84197 -17.86117 -17.44616 -17.12386 -16.49051 -16.36238 -16.22200 -15.98150 -15.89822 -15.56127 -15.29637 -14.95942 -14.72883 -14.46099 -14.13738 -13.83183 -13.58183 -13.47200 -13.15711 -12.99520 -12.60974 -12.51934 -12.41911 -12.33705 -12.25840 -11.99300 -11.82258 -11.69937 -11.44728 -11.39859 -11.18981 -10.80895 -10.70561 -9.83701 -9.50510 -9.24848 -8.31395 -6.39212 1.37988 1.38955 1.48166 1.73255 2.17975 2.31601 2.70032 2.94672 3.01859 3.06986 3.13561 3.82963 3.86861 3.90926 4.01890 4.09538 4.10808 4.13740 4.19907 4.31799 4.41435 4.48208 4.56730 4.62881 4.68916 4.72829 4.75747 4.78011 4.80686 4.86422 4.88998 4.99077 5.03441 5.06815 5.24691 5.39417 5.55976 5.71310 5.84005 5.91165 6.11067 6.16487 6.23516 6.65929 7.00525 7.27249 7.65402 8.84630 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.011615 B = 0.005077 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.153709 B = 5513.460196 C = 7156.614007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.019 3.981 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.234 1.234 7 C -0.535 4.535 8 H 0.028 0.972 9 C 0.219 3.781 10 N -0.614 5.614 11 C 0.151 3.849 12 C 0.059 3.941 13 N -0.532 5.532 14 C 0.010 3.990 15 C 0.068 3.932 16 O -0.404 6.404 17 C 0.071 3.929 18 C 0.014 3.986 19 C 0.708 3.292 20 O -0.637 6.637 21 N -0.711 5.711 22 C 0.072 3.928 23 C -0.196 4.196 24 C -0.165 4.165 25 H 0.267 0.733 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.021 0.979 31 H 0.048 0.952 32 H 0.024 0.976 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.118 0.882 36 H 0.070 0.930 37 H 0.116 0.884 38 H 0.086 0.914 39 H 0.024 0.976 40 H 0.405 0.595 41 H 0.125 0.875 42 H 0.084 0.916 43 H 0.116 0.884 44 H 0.127 0.873 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.097 -4.766 -1.736 11.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.180 4.180 3 Si 0.764 3.236 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.157 1.157 7 C -0.573 4.573 8 H 0.046 0.954 9 C 0.097 3.903 10 N -0.347 5.347 11 C 0.027 3.973 12 C -0.070 4.070 13 N -0.257 5.257 14 C -0.118 4.118 15 C -0.009 4.009 16 O -0.323 6.323 17 C -0.005 4.005 18 C -0.114 4.114 19 C 0.409 3.591 20 O -0.520 6.520 21 N -0.365 5.365 22 C -0.035 4.035 23 C -0.235 4.235 24 C -0.203 4.203 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.039 0.961 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.088 0.912 37 H 0.134 0.866 38 H 0.105 0.895 39 H 0.042 0.958 40 H 0.242 0.758 41 H 0.143 0.857 42 H 0.103 0.897 43 H 0.135 0.865 44 H 0.145 0.855 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 10.564 -5.734 -1.880 12.166 hybrid contribution -1.551 1.734 0.308 2.347 sum 9.012 -4.000 -1.572 9.985 Atomic orbital electron populations 1.70066 1.08478 1.28270 1.51377 1.25804 0.95408 1.03037 0.93764 0.85815 0.79912 0.78415 0.79468 1.19215 1.21266 1.15704 1.21495 0.91163 0.93007 1.51652 0.95354 1.19594 0.93011 0.79282 0.98448 1.47065 1.68154 1.15228 1.04302 1.21111 0.96245 0.96075 0.83828 1.22262 0.97837 0.96167 0.90755 1.62264 1.40829 1.20362 1.02276 1.22970 1.01539 0.94887 0.92399 1.22793 0.89607 0.92666 0.95803 1.87939 1.53775 1.47937 1.42682 1.22729 1.02506 0.90416 0.84893 1.22850 0.91802 0.96796 0.99975 1.15915 0.78096 0.83823 0.81232 1.90787 1.56215 1.17871 1.87146 1.44644 1.70642 1.17580 1.03645 1.21514 1.04320 0.98636 0.79012 1.23469 0.93680 1.04234 1.02093 1.23459 0.98785 0.99400 0.98636 0.92395 0.93954 0.93432 0.90092 0.89252 0.96069 0.93332 0.95715 0.88165 0.91058 0.86428 0.91181 0.86583 0.89535 0.95809 0.75760 0.85716 0.89739 0.86538 0.85515 0.88171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.40 13.96 21.45 0.30 -55.10 16 2 C 0.02 0.99 5.47 84.65 0.46 1.45 16 3 Si 0.94 38.84 27.47 68.60 1.88 40.72 16 4 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.29 -11.98 7.11 99.48 0.71 -11.28 16 6 H -0.23 -8.44 6.54 99.48 0.65 -7.79 16 7 C -0.53 -27.81 9.47 25.60 0.24 -27.57 16 8 H 0.03 1.73 7.67 -2.91 -0.02 1.71 16 9 C 0.22 9.17 4.04 85.63 0.35 9.52 16 10 N -0.61 -25.02 2.46 -844.21 -2.07 -27.09 16 11 C 0.15 5.52 5.39 86.38 0.47 5.99 16 12 C 0.06 2.28 5.28 86.30 0.46 2.74 16 13 N -0.53 -16.89 4.73 -895.23 -4.23 -21.12 16 14 C 0.01 0.28 5.44 86.31 0.47 0.75 16 15 C 0.07 1.53 7.01 72.01 0.50 2.04 16 16 O -0.40 -10.65 10.83 -148.98 -1.61 -12.26 16 17 C 0.07 1.67 7.01 72.01 0.50 2.17 16 18 C 0.01 0.42 5.64 86.31 0.49 0.90 16 19 C 0.71 29.93 8.28 179.05 1.48 31.41 16 20 O -0.64 -29.62 15.49 -3.99 -0.06 -29.68 16 21 N -0.71 -26.25 5.43 -457.80 -2.49 -28.74 16 22 C 0.07 2.18 6.43 44.99 0.29 2.47 16 23 C -0.20 -5.04 10.46 30.59 0.32 -4.72 16 24 C -0.16 -3.63 10.45 30.59 0.32 -3.31 16 25 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 26 H 0.04 1.67 5.42 -2.39 -0.01 1.65 16 27 H 0.05 1.87 7.32 -2.39 -0.02 1.85 16 28 H 0.08 2.98 7.42 -2.39 -0.02 2.96 16 29 H 0.09 2.84 6.27 -2.39 -0.01 2.83 16 30 H 0.02 0.96 7.24 -2.39 -0.02 0.94 16 31 H 0.05 2.09 8.04 -2.39 -0.02 2.07 16 32 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.10 2.49 6.38 -2.38 -0.02 2.47 16 34 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.09 2.45 8.09 -2.39 -0.02 2.43 16 39 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.41 14.78 6.56 -92.71 -0.61 14.18 16 41 H 0.13 4.00 7.40 -2.38 -0.02 3.99 16 42 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.12 2.52 8.14 -2.38 -0.02 2.50 16 44 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -68.07 359.01 -1.62 -69.69 By element: Atomic # 1 Polarization: 39.44 SS G_CDS: 0.32 Total: 39.76 kcal Atomic # 6 Polarization: 17.49 SS G_CDS: 6.35 Total: 23.84 kcal Atomic # 7 Polarization: -123.56 SS G_CDS: -8.49 Total: -132.06 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -1.67 Total: -41.95 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 1.88 Total: 40.72 kcal Total: -68.07 -1.62 -69.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071908622.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.669 kcal (2) G-P(sol) polarization free energy of solvation -68.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds