Wall clock time and date at job start Tue Mar 31 2020 03:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.52992 * 109.47132 * 180.02562 * 16 14 12 18 18 C 1.53001 * 109.47364 * 180.02562 * 17 16 14 19 19 N 1.46496 * 109.47588 * 180.02562 * 18 17 16 20 20 C 1.34773 * 124.17406 * 269.72796 * 19 18 17 21 21 O 1.21229 * 127.15607 * 359.97438 * 20 19 18 22 22 C 1.51580 * 105.68319 * 179.97438 * 20 19 18 23 23 N 1.47314 * 103.59277 * 0.32156 * 22 20 19 24 24 C 1.33792 * 124.18198 * 90.02439 * 19 18 17 25 25 O 1.21537 * 123.76563 * 359.96349 * 24 19 18 26 26 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 27 27 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 31 31 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 32 32 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 33 33 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 34 34 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 35 35 H 1.08998 * 109.47625 * 300.00138 * 17 16 14 36 36 H 1.08996 * 109.47379 * 60.00532 * 17 16 14 37 37 H 1.09000 * 109.47119 * 300.00449 * 18 17 16 38 38 H 1.09000 * 109.47172 * 59.99876 * 18 17 16 39 39 H 1.08997 * 110.76989 * 241.71309 * 22 20 19 40 40 H 1.09006 * 110.56717 * 118.82548 * 22 20 19 41 41 H 0.97006 * 126.69174 * 179.77426 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.1462 0.2157 -4.1461 18 6 4.6562 -0.5054 -5.3955 19 7 5.4709 0.4152 -6.1923 20 6 4.9828 1.2097 -7.1654 21 8 3.8305 1.2939 -7.5327 22 6 6.1741 1.9760 -7.7049 23 7 7.3022 1.4717 -6.9029 24 6 6.7924 0.5669 -6.0479 25 8 7.4579 -0.0457 -5.2362 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.7089 1.1611 3.4845 30 1 0.7376 -2.1442 -1.9996 31 1 2.4629 -2.5817 -1.9866 32 1 1.5295 -2.5968 -0.4711 33 1 3.9016 -1.6021 -3.0168 34 1 2.4483 -1.0887 -3.9070 35 1 3.5409 1.0721 -4.4431 36 1 4.9938 0.5582 -3.5525 37 1 5.2615 -1.3620 -5.0989 38 1 3.8085 -0.8476 -5.9890 39 1 6.0450 3.0477 -7.5538 40 1 6.3255 1.7543 -8.7614 41 1 8.2315 1.7400 -6.9766 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103442992.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:23 Heat of formation + Delta-G solvation = -80.159686 kcal Electronic energy + Delta-G solvation = -24040.873204 eV Core-core repulsion = 20342.933385 eV Total energy + Delta-G solvation = -3697.939819 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.55540 -39.10898 -38.81201 -36.34639 -35.96732 -35.20472 -33.06384 -32.50707 -29.58561 -28.19384 -27.09139 -25.99604 -25.19064 -23.25523 -22.92721 -20.75810 -20.49135 -18.42849 -18.11043 -17.34644 -17.00289 -16.56879 -16.10239 -15.78214 -15.56643 -15.41586 -15.07925 -14.46070 -14.37325 -14.12170 -13.95151 -13.90814 -12.93798 -12.60147 -12.51487 -12.41709 -11.87385 -11.78525 -11.52771 -11.38389 -11.09095 -11.02662 -10.84591 -10.74375 -10.65225 -10.49643 -10.23577 -10.14678 -10.02013 -9.82386 -9.16552 -8.88605 -8.39907 -7.54983 -6.05032 -4.13091 1.34639 1.92497 2.74305 2.82352 3.29429 3.34514 3.35785 3.44859 3.66956 3.99433 4.41625 4.45111 4.59401 4.79346 4.88464 4.99791 5.18498 5.22791 5.25950 5.41627 5.47065 5.61488 5.66045 5.88831 6.04957 6.15236 6.34449 6.40081 6.41010 6.77145 6.78297 6.86548 7.08307 7.09818 7.46197 7.57008 7.74449 7.83777 8.04648 8.23094 8.57520 8.85872 9.10470 9.53360 11.00286 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.025833 B = 0.002982 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.633937 B = 9387.589155 C = 9773.183778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.062 0.938 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.594 5.594 13 C 0.083 3.917 14 C 0.503 3.497 15 O -0.555 6.555 16 C -0.135 4.135 17 C -0.119 4.119 18 C 0.118 3.882 19 N -0.574 5.574 20 C 0.519 3.481 21 O -0.467 6.467 22 C 0.062 3.938 23 N -0.731 5.731 24 C 0.700 3.300 25 O -0.538 6.538 26 H 0.010 0.990 27 H 0.029 0.971 28 H 0.093 0.907 29 H 0.264 0.736 30 H 0.042 0.958 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.633 -2.059 -21.681 23.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.080 0.920 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.212 1.212 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.326 5.326 13 C -0.061 4.061 14 C 0.290 3.710 15 O -0.434 6.434 16 C -0.176 4.176 17 C -0.157 4.157 18 C -0.002 4.002 19 N -0.320 5.320 20 C 0.306 3.694 21 O -0.336 6.336 22 C -0.066 4.066 23 N -0.397 5.397 24 C 0.401 3.599 25 O -0.410 6.410 26 H 0.029 0.971 27 H 0.048 0.952 28 H 0.111 0.889 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 8.317 -1.688 -21.117 22.759 hybrid contribution 0.640 -0.419 0.850 1.144 sum 8.957 -2.108 -20.268 22.258 Atomic orbital electron populations 1.22078 0.98247 0.99351 1.00743 1.18915 0.90836 0.94532 0.80005 0.91986 1.21298 1.31842 1.13028 0.90369 0.92292 1.24901 0.94946 0.94984 0.98967 1.69875 1.36337 1.22588 1.23836 0.86549 0.79266 0.79549 0.81983 1.21178 1.20232 1.20227 1.48242 1.49066 1.11645 1.23599 1.21602 0.98768 0.83341 1.02352 1.20325 0.79215 0.87156 0.84334 1.90647 1.58461 1.17302 1.76973 1.21563 1.00639 0.99511 0.95884 1.21644 1.00744 0.98744 0.94615 1.21820 0.94723 0.91423 0.92273 1.46400 1.09310 1.40656 1.35681 1.20897 0.89854 0.79537 0.79084 1.90842 1.18124 1.64054 1.60587 1.22469 0.84297 1.01397 0.98397 1.45427 1.11049 1.44205 1.39008 1.15897 0.81622 0.80788 0.81635 1.91046 1.61879 1.50378 1.37727 0.97067 0.95185 0.88895 0.92643 0.93919 0.92729 0.90163 0.89029 0.89261 0.90684 0.90331 0.88407 0.88595 0.85829 0.85978 0.71487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.97 37.16 0.33 -3.23 16 2 C 0.26 6.71 2.64 -69.09 -0.18 6.53 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.53 16 4 C -0.53 -14.46 7.99 -34.44 -0.28 -14.73 16 5 H 0.06 1.58 7.33 -52.49 -0.38 1.20 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.53 11.32 55.43 0.63 -24.90 16 8 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 9 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.59 -12.84 2.75 -175.26 -0.48 -13.32 16 13 C 0.08 1.39 9.24 59.85 0.55 1.94 16 14 C 0.50 10.49 7.67 -10.99 -0.08 10.40 16 15 O -0.55 -13.96 15.31 5.56 0.09 -13.88 16 16 C -0.14 -1.94 4.25 -27.89 -0.12 -2.06 16 17 C -0.12 -1.66 4.83 -26.73 -0.13 -1.79 16 18 C 0.12 1.27 5.70 -4.04 -0.02 1.25 16 19 N -0.57 -6.08 2.60 -120.73 -0.31 -6.40 16 20 C 0.52 4.88 8.32 -10.55 -0.09 4.79 16 21 O -0.47 -5.78 17.75 5.60 0.10 -5.68 16 22 C 0.06 0.29 7.97 -4.32 -0.03 0.25 16 23 N -0.73 -4.60 6.58 -65.74 -0.43 -5.03 16 24 C 0.70 7.67 8.62 -88.03 -0.76 6.91 16 25 O -0.54 -8.01 17.48 5.33 0.09 -7.92 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 28 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.72 6.44 -51.92 -0.33 0.39 16 32 H 0.08 1.44 7.02 -51.93 -0.36 1.07 16 33 H 0.09 1.14 7.40 -51.93 -0.38 0.76 16 34 H 0.09 1.06 8.11 -51.93 -0.42 0.63 16 35 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 36 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 37 H 0.10 0.99 7.86 -51.93 -0.41 0.58 16 38 H 0.10 0.89 8.00 -51.93 -0.42 0.47 16 39 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.12 0.23 8.14 -51.93 -0.42 -0.20 16 41 H 0.44 1.67 8.96 -40.82 -0.37 1.31 16 LS Contribution 345.00 15.07 5.20 5.20 Total: -1.00 -36.71 345.00 -6.87 -43.57 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -5.82 Total: 0.12 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: -0.90 Total: 11.96 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: -0.60 Total: -49.65 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: 0.28 Total: -27.48 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.71 -6.87 -43.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442992.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.585 kcal (2) G-P(sol) polarization free energy of solvation -36.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds