Wall clock time and date at job start Tue Mar 31 2020 03:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.52992 * 109.47132 * 180.02562 * 16 14 12 18 18 C 1.53001 * 109.47364 * 180.02562 * 17 16 14 19 19 N 1.46496 * 109.47588 * 180.02562 * 18 17 16 20 20 C 1.34773 * 124.17406 * 269.72796 * 19 18 17 21 21 O 1.21229 * 127.15607 * 359.97438 * 20 19 18 22 22 C 1.51580 * 105.68319 * 179.97438 * 20 19 18 23 23 N 1.47314 * 103.59277 * 0.32156 * 22 20 19 24 24 C 1.33792 * 124.18198 * 90.02439 * 19 18 17 25 25 O 1.21537 * 123.76563 * 359.96349 * 24 19 18 26 26 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 27 27 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 31 31 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 32 32 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 33 33 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 34 34 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 35 35 H 1.08998 * 109.47625 * 300.00138 * 17 16 14 36 36 H 1.08996 * 109.47379 * 60.00532 * 17 16 14 37 37 H 1.09000 * 109.47119 * 300.00449 * 18 17 16 38 38 H 1.09000 * 109.47172 * 59.99876 * 18 17 16 39 39 H 1.08997 * 110.76989 * 241.71309 * 22 20 19 40 40 H 1.09006 * 110.56717 * 118.82548 * 22 20 19 41 41 H 0.97006 * 126.69174 * 179.77426 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.1462 0.2157 -4.1461 18 6 4.6562 -0.5054 -5.3955 19 7 5.4709 0.4152 -6.1923 20 6 4.9828 1.2097 -7.1654 21 8 3.8305 1.2939 -7.5327 22 6 6.1741 1.9760 -7.7049 23 7 7.3022 1.4717 -6.9029 24 6 6.7924 0.5669 -6.0479 25 8 7.4579 -0.0457 -5.2362 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.7089 1.1611 3.4845 30 1 0.7376 -2.1442 -1.9996 31 1 2.4629 -2.5817 -1.9866 32 1 1.5295 -2.5968 -0.4711 33 1 3.9016 -1.6021 -3.0168 34 1 2.4483 -1.0887 -3.9070 35 1 3.5409 1.0721 -4.4431 36 1 4.9938 0.5582 -3.5525 37 1 5.2615 -1.3620 -5.0989 38 1 3.8085 -0.8476 -5.9890 39 1 6.0450 3.0477 -7.5538 40 1 6.3255 1.7543 -8.7614 41 1 8.2315 1.7400 -6.9766 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103442992.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:22 Heat of formation + Delta-G solvation = -108.570325 kcal Electronic energy + Delta-G solvation = -24042.105182 eV Core-core repulsion = 20342.933385 eV Total energy + Delta-G solvation = -3699.171797 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.29532 -40.76425 -39.64508 -37.32539 -37.18078 -36.57422 -34.84563 -33.77632 -31.42700 -28.93665 -28.07891 -27.47121 -27.29781 -24.35428 -23.81552 -22.40009 -21.34929 -19.87503 -19.03851 -18.52024 -18.12264 -17.89316 -17.56757 -17.12786 -16.78442 -16.53420 -16.25709 -15.91163 -15.34830 -15.26414 -14.99598 -14.72227 -14.43067 -14.25045 -13.91019 -13.69224 -13.40142 -13.11678 -13.04828 -12.90624 -12.74707 -12.63020 -12.60344 -12.19874 -12.12821 -12.02469 -11.86203 -11.31341 -11.21240 -10.94676 -10.65599 -10.47482 -10.39957 -9.31194 -8.15618 -6.32630 0.62757 1.20776 1.40251 1.43235 1.50452 1.83337 1.93609 2.29178 2.34274 2.52433 3.07198 3.12068 3.65553 3.75225 3.89743 4.11398 4.23755 4.33048 4.39621 4.44376 4.47952 4.61741 4.69632 4.70750 4.77575 4.80267 4.89284 5.01819 5.06270 5.10693 5.19604 5.46969 5.60599 5.66996 5.84555 6.04214 6.05102 6.16006 6.39504 6.75832 6.86023 7.11001 7.32001 7.50128 8.88715 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.025833 B = 0.002982 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.633937 B = 9387.589155 C = 9773.183778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.260 3.740 3 H 0.004 0.996 4 C -0.541 4.541 5 H 0.062 0.938 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.284 1.284 10 H -0.260 1.260 11 H -0.278 1.278 12 N -0.603 5.603 13 C 0.078 3.922 14 C 0.488 3.512 15 O -0.612 6.612 16 C -0.119 4.119 17 C -0.109 4.109 18 C 0.122 3.878 19 N -0.582 5.582 20 C 0.512 3.488 21 O -0.501 6.501 22 C 0.073 3.927 23 N -0.711 5.711 24 C 0.693 3.307 25 O -0.586 6.586 26 H 0.018 0.982 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.264 0.736 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.052 0.948 36 H 0.045 0.955 37 H 0.107 0.893 38 H 0.117 0.883 39 H 0.152 0.848 40 H 0.164 0.836 41 H 0.454 0.546 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.318 -3.906 -23.690 25.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.158 3.842 3 H 0.022 0.978 4 C -0.579 4.579 5 H 0.081 0.919 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.209 1.209 10 H -0.185 1.185 11 H -0.203 1.203 12 N -0.333 5.333 13 C -0.064 4.064 14 C 0.278 3.722 15 O -0.495 6.495 16 C -0.159 4.159 17 C -0.148 4.148 18 C 0.001 3.999 19 N -0.328 5.328 20 C 0.302 3.698 21 O -0.373 6.373 22 C -0.053 4.053 23 N -0.376 5.376 24 C 0.393 3.607 25 O -0.463 6.463 26 H 0.037 0.963 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.085 0.915 33 H 0.139 0.861 34 H 0.145 0.855 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.125 0.875 38 H 0.135 0.865 39 H 0.169 0.831 40 H 0.182 0.818 41 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges 9.012 -3.549 -23.188 25.129 hybrid contribution 0.424 0.231 1.423 1.502 sum 9.436 -3.318 -21.765 23.954 Atomic orbital electron populations 1.21857 0.97151 1.00132 0.99796 1.18499 0.91632 0.92099 0.82012 0.97827 1.21587 1.31952 1.13158 0.91212 0.91945 1.25780 0.95059 0.95657 1.02148 1.70029 1.37356 1.23941 1.24492 0.85489 0.78356 0.79061 0.77991 1.20899 1.18455 1.20340 1.48281 1.49072 1.13604 1.22357 1.21897 1.01578 0.80282 1.02672 1.21519 0.78167 0.86804 0.85720 1.90616 1.60313 1.20141 1.78462 1.21566 1.02154 0.99331 0.92892 1.21497 0.99129 0.98473 0.95720 1.21746 0.95690 0.91267 0.91158 1.46511 1.09402 1.40929 1.35919 1.21654 0.90588 0.79163 0.78390 1.90826 1.19832 1.65089 1.61571 1.22734 0.81012 1.01847 0.99689 1.45404 1.12174 1.42409 1.37627 1.16115 0.81543 0.81235 0.81799 1.91010 1.62804 1.52523 1.39937 0.96275 0.93309 0.91542 0.92639 0.91440 0.88570 0.91531 0.86137 0.85500 0.92902 0.93592 0.87459 0.86528 0.83075 0.81850 0.69898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.50 8.97 71.98 0.65 -5.86 16 2 C 0.26 13.99 2.64 44.24 0.12 14.11 16 3 H 0.00 0.24 6.90 -2.39 -0.02 0.23 16 4 C -0.54 -30.15 7.99 25.60 0.20 -29.94 16 5 H 0.06 3.35 7.33 -2.91 -0.02 3.33 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -54.39 11.32 21.45 0.24 -54.15 16 8 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 9 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 10 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 N -0.60 -25.96 2.75 -826.80 -2.28 -28.23 16 13 C 0.08 2.38 9.24 127.77 1.18 3.56 16 14 C 0.49 20.58 7.67 87.66 0.67 21.26 16 15 O -0.61 -32.58 15.31 -3.03 -0.05 -32.62 16 16 C -0.12 -3.20 4.25 29.85 0.13 -3.08 16 17 C -0.11 -3.05 4.83 30.59 0.15 -2.91 16 18 C 0.12 2.47 5.70 86.38 0.49 2.96 16 19 N -0.58 -11.67 2.60 -773.14 -2.01 -13.68 16 20 C 0.51 8.72 8.32 87.94 0.73 9.45 16 21 O -0.50 -11.81 17.75 -2.87 -0.05 -11.86 16 22 C 0.07 0.43 7.97 85.76 0.68 1.12 16 23 N -0.71 -7.24 6.58 -480.32 -3.16 -10.40 16 24 C 0.69 14.49 8.62 179.44 1.55 16.04 16 25 O -0.59 -17.49 17.48 -3.83 -0.07 -17.55 16 26 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.05 2.18 7.67 -2.39 -0.02 2.16 16 28 H 0.07 3.66 6.07 -2.39 -0.01 3.65 16 29 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 30 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.10 2.14 6.44 -2.38 -0.02 2.12 16 32 H 0.07 2.24 7.02 -2.39 -0.02 2.23 16 33 H 0.12 2.59 7.40 -2.39 -0.02 2.58 16 34 H 0.13 2.51 8.11 -2.39 -0.02 2.49 16 35 H 0.05 1.69 8.10 -2.39 -0.02 1.67 16 36 H 0.05 1.57 8.10 -2.39 -0.02 1.55 16 37 H 0.11 1.97 7.86 -2.39 -0.02 1.95 16 38 H 0.12 1.87 8.00 -2.39 -0.02 1.85 16 39 H 0.15 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.16 -0.20 8.14 -2.38 -0.02 -0.22 16 41 H 0.45 2.29 8.96 -92.70 -0.83 1.46 16 Total: -1.00 -86.84 345.00 1.88 -84.96 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.23 Total: 9.75 kcal Atomic # 6 Polarization: 20.89 SS G_CDS: 7.00 Total: 27.89 kcal Atomic # 7 Polarization: -99.26 SS G_CDS: -7.21 Total: -106.47 kcal Atomic # 8 Polarization: -61.87 SS G_CDS: -0.16 Total: -62.04 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -86.84 1.88 -84.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442992.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.607 kcal (2) G-P(sol) polarization free energy of solvation -86.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds