Wall clock time and date at job start Tue Mar 31 2020 04:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 113.99473 * 2 1 4 4 C 1.52999 * 109.46589 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.47700 * 64.99641 * 4 3 2 6 6 C 1.42898 * 114.00461 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47505 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47220 * 180.02562 * 7 6 5 9 9 O 1.21290 * 120.00012 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99736 * 179.97438 * 8 7 6 11 11 C 1.40159 * 119.99983 * 179.97438 * 10 8 7 12 12 C 1.40409 * 125.97033 * 0.02562 * 11 10 8 13 13 C 1.35241 * 107.86602 * 179.73843 * 12 11 10 14 14 N 1.34966 * 107.86079 * 0.39163 * 13 12 11 15 15 C 1.46500 * 125.97782 * 179.87198 * 14 13 12 16 16 C 1.50706 * 109.47299 * 124.71059 * 15 14 13 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72558 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72681 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72491 * 20 18 16 24 24 N 1.31219 * 125.97718 * 179.97438 * 11 10 8 25 25 H 1.09003 * 109.47006 * 60.00388 * 1 2 3 26 26 H 1.08996 * 109.46920 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47130 * 300.00321 * 1 2 3 28 28 H 1.08996 * 109.47713 * 60.00127 * 3 2 1 29 29 H 1.09001 * 109.47029 * 299.99814 * 3 2 1 30 30 H 1.09007 * 109.47079 * 304.99398 * 4 3 2 31 31 H 1.09007 * 109.46956 * 184.99882 * 4 3 2 32 32 H 1.09002 * 109.46423 * 60.00108 * 6 5 4 33 33 H 1.09003 * 109.47125 * 300.00741 * 6 5 4 34 34 H 1.09001 * 109.46879 * 60.00147 * 7 6 5 35 35 H 1.09006 * 109.47056 * 300.00724 * 7 6 5 36 36 H 0.97003 * 120.00166 * 0.02562 * 10 8 7 37 37 H 1.08002 * 126.06850 * 0.02562 * 12 11 10 38 38 H 1.08003 * 126.07024 * 180.26845 * 13 12 11 39 39 H 1.09004 * 109.47078 * 4.71821 * 15 14 13 40 40 H 1.08993 * 109.47364 * 244.71592 * 15 14 13 41 41 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9649 0.5797 -1.2219 6 6 5.3812 0.4202 -1.3250 7 6 5.7248 -0.2330 -2.6651 8 6 7.2183 -0.4017 -2.7735 9 8 7.9373 -0.0359 -1.8677 10 7 7.7551 -0.9600 -3.8765 11 6 9.1443 -1.1165 -3.9776 12 6 10.0893 -0.7387 -3.0103 13 6 11.3157 -1.0612 -3.4803 14 7 11.1589 -1.6139 -4.7015 15 6 12.2330 -2.1046 -5.5685 16 6 11.9669 -3.5424 -5.9334 17 1 11.0855 -4.0407 -5.5574 18 6 12.8484 -4.2218 -6.7472 19 7 13.9189 -3.6134 -7.2094 20 14 12.5182 -6.0037 -7.2000 21 1 13.6039 -6.4993 -8.0836 22 1 12.4700 -6.8274 -5.9652 23 1 11.2181 -6.1010 -7.9109 24 7 9.7890 -1.6424 -4.9923 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.6886 1.8465 0.8899 29 1 1.6885 1.8464 -0.8900 30 1 3.8514 0.5683 0.8410 31 1 3.9785 2.1767 0.0889 32 1 5.7358 -0.2118 -0.5108 33 1 5.8622 1.3964 -1.2630 34 1 5.3702 0.3994 -3.4790 35 1 5.2437 -1.2092 -2.7275 36 1 7.1801 -1.2529 -4.6008 37 1 9.8746 -0.2771 -2.0578 38 1 12.2542 -0.9027 -2.9698 39 1 13.1853 -2.0335 -5.0429 40 1 12.2724 -1.5010 -6.4752 41 1 14.0903 -2.6880 -6.9745 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117716129.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:27:48 Heat of formation + Delta-G solvation = -50.692606 kcal Electronic energy + Delta-G solvation = -22617.536594 eV Core-core repulsion = 18920.874564 eV Total energy + Delta-G solvation = -3696.662030 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.79225 -39.50643 -38.69337 -37.47382 -34.89201 -33.69266 -32.44324 -30.90470 -29.92695 -29.40083 -26.68490 -26.33778 -24.36184 -22.93073 -22.91012 -21.37695 -20.32432 -19.60206 -17.60963 -17.21536 -17.19857 -16.79938 -16.43512 -16.21604 -15.79477 -15.44534 -15.23168 -14.99530 -14.23811 -13.95571 -13.80369 -13.78173 -13.36162 -13.11147 -12.71499 -12.44829 -12.25150 -12.06812 -11.85694 -11.77568 -11.50641 -11.33931 -11.17151 -10.82031 -10.48957 -10.16405 -10.10781 -10.08444 -9.88509 -9.67105 -9.01266 -8.58918 -8.23116 -7.55097 -6.58951 -4.33069 2.23477 2.56378 2.82845 3.32499 3.37544 3.38373 3.39507 3.58459 3.63293 3.88583 4.40484 4.51253 4.60604 4.73333 4.79303 4.82829 4.92935 4.95576 5.07461 5.14036 5.15068 5.26037 5.29411 5.30801 5.46597 5.55234 5.59221 5.69736 6.16677 6.38559 6.48656 6.57270 6.71000 6.73543 6.89126 7.31624 7.44408 7.68716 7.81418 8.16170 8.33179 8.52361 8.60906 9.35131 10.78618 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.030060 B = 0.002115 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.256976 B =13234.113707 C =13947.327461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.062 3.938 4 C 0.065 3.935 5 O -0.384 6.384 6 C 0.078 3.922 7 C -0.134 4.134 8 C 0.524 3.476 9 O -0.521 6.521 10 N -0.629 5.629 11 C 0.258 3.742 12 C -0.285 4.285 13 C 0.050 3.950 14 N -0.317 5.317 15 C 0.249 3.751 16 C -0.608 4.608 17 H 0.063 0.937 18 C 0.023 3.977 19 N -0.904 5.904 20 Si 1.077 2.923 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.285 1.285 24 N -0.301 5.301 25 H 0.041 0.959 26 H 0.086 0.914 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.413 0.587 37 H 0.161 0.839 38 H 0.168 0.832 39 H 0.046 0.954 40 H 0.035 0.965 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.386 10.691 13.515 28.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.011 4.011 5 O -0.303 6.303 6 C 0.001 3.999 7 C -0.174 4.174 8 C 0.310 3.690 9 O -0.395 6.395 10 N -0.277 5.277 11 C 0.004 3.996 12 C -0.316 4.316 13 C -0.099 4.099 14 N -0.099 5.099 15 C 0.131 3.869 16 C -0.646 4.646 17 H 0.082 0.918 18 C -0.182 4.182 19 N -0.540 5.540 20 Si 0.904 3.096 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.211 1.211 24 N -0.132 5.132 25 H 0.060 0.940 26 H 0.105 0.895 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.248 0.752 37 H 0.179 0.821 38 H 0.185 0.815 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.296 8.887 11.930 25.978 hybrid contribution -0.798 1.838 1.432 2.463 sum -22.095 10.725 13.362 27.960 Atomic orbital electron populations 1.22753 0.81058 1.02933 0.99843 1.87978 1.19597 1.27298 1.95367 1.22580 0.92425 0.85528 1.00891 1.22500 0.93167 0.97739 0.87740 1.87855 1.22083 1.82268 1.38108 1.22110 0.80923 1.00374 0.96485 1.21398 0.91613 1.04592 0.99819 1.20383 0.90274 0.77010 0.81285 1.90651 1.62256 1.48342 1.38298 1.42460 1.03939 1.60675 1.20638 1.19125 0.84140 1.01153 0.95154 1.21534 0.89862 1.16459 1.03784 1.22571 0.99859 0.99187 0.88308 1.48795 1.04114 1.43341 1.13605 1.19770 0.81720 0.96569 0.88865 1.22101 1.12012 0.95409 1.35123 0.91838 1.25931 0.92712 1.06414 0.93133 1.70854 1.26370 1.13674 1.43074 0.83416 0.76047 0.73561 0.76588 1.20517 1.21229 1.21121 1.77355 0.88833 1.25385 1.21623 0.93990 0.89527 0.94214 0.91791 0.92342 0.92214 0.91578 0.92091 0.92244 0.87650 0.87491 0.75151 0.82138 0.81479 0.93596 0.94741 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.62 10.67 -40.09 -0.43 -4.04 16 3 C 0.06 0.44 6.32 37.16 0.23 0.68 16 4 C 0.07 0.51 6.32 37.16 0.23 0.75 16 5 O -0.38 -3.97 10.31 -40.09 -0.41 -4.38 16 6 C 0.08 0.78 5.23 37.16 0.19 0.98 16 7 C -0.13 -1.28 6.07 -27.89 -0.17 -1.45 16 8 C 0.52 7.18 7.80 -10.99 -0.09 7.09 16 9 O -0.52 -8.69 13.11 5.55 0.07 -8.62 16 10 N -0.63 -9.53 5.45 -11.13 -0.06 -9.59 16 11 C 0.26 5.17 8.11 -154.39 -1.25 3.92 16 12 C -0.29 -5.65 9.61 -39.83 -0.38 -6.03 16 13 C 0.05 1.01 11.44 -17.24 -0.20 0.82 16 14 N -0.32 -7.44 3.67 -62.56 -0.23 -7.67 16 15 C 0.25 6.32 5.57 -5.19 -0.03 6.29 16 16 C -0.61 -17.17 9.24 -34.44 -0.32 -17.49 16 17 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 18 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 19 N -0.90 -26.35 13.65 55.43 0.76 -25.60 16 20 Si 1.08 24.97 29.90 -169.99 -5.08 19.89 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 N -0.30 -7.00 12.42 31.44 0.39 -6.61 16 25 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 26 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.65 8.10 -51.93 -0.42 0.22 16 33 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 34 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.41 5.03 8.82 -40.82 -0.36 4.67 16 37 H 0.16 3.05 5.92 -52.49 -0.31 2.74 16 38 H 0.17 2.73 8.06 -52.48 -0.42 2.30 16 39 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 40 H 0.03 0.91 8.00 -51.93 -0.42 0.49 16 41 H 0.27 7.60 7.22 -40.82 -0.29 7.31 16 LS Contribution 355.91 15.07 5.36 5.36 Total: -1.00 -35.03 355.91 -6.45 -41.48 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -6.07 Total: 2.39 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -0.75 Total: -2.61 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: 0.86 Total: -49.46 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.77 Total: -17.05 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.08 Total: 19.89 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.03 -6.45 -41.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117716129.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.211 kcal (2) G-P(sol) polarization free energy of solvation -35.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds