Wall clock time and date at job start Tue Mar 31 2020 05:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86795 * 119.99871 * 2 1 4 4 H 1.48497 * 109.47416 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47196 * 299.99744 * 3 2 1 6 6 H 1.48505 * 109.47253 * 59.99596 * 3 2 1 7 7 C 1.38946 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99652 * 180.02562 * 7 2 1 9 9 N 1.37097 * 120.00440 * 359.97438 * 7 2 1 10 10 C 1.34771 * 119.99911 * 179.97438 * 9 7 2 11 11 O 1.21286 * 120.00607 * 0.02562 * 10 9 7 12 12 C 1.50708 * 119.99688 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47107 * 185.73552 * 12 10 9 14 14 C 1.47904 * 110.99996 * 66.01916 * 13 12 10 15 15 C 1.53988 * 107.06036 * 145.84442 * 14 13 12 16 16 C 1.54593 * 105.22626 * 358.72464 * 15 14 13 17 17 C 1.48531 * 111.00092 * 183.41457 * 13 12 10 18 18 H 1.09010 * 110.66577 * 318.71249 * 17 13 12 19 19 C 1.52996 * 110.66905 * 81.84349 * 17 13 12 20 20 N 1.46907 * 109.47144 * 300.73419 * 19 17 13 21 21 C 1.47017 * 110.99543 * 287.62867 * 20 19 17 22 22 C 1.53094 * 109.25387 * 177.60466 * 21 20 19 23 23 O 1.43014 * 109.25878 * 56.85486 * 22 21 20 24 24 C 1.43023 * 113.73673 * 301.32720 * 23 22 21 25 25 C 1.47013 * 110.99961 * 163.99943 * 20 19 17 26 26 H 0.96995 * 120.00248 * 0.02562 * 1 2 3 27 27 H 0.96999 * 119.99767 * 0.02562 * 9 7 2 28 28 H 1.08998 * 109.46709 * 65.73684 * 12 10 9 29 29 H 1.08996 * 109.46936 * 305.73676 * 12 10 9 30 30 H 1.09002 * 109.91790 * 26.49160 * 14 13 12 31 31 H 1.08997 * 110.07806 * 265.28729 * 14 13 12 32 32 H 1.09001 * 110.31520 * 117.68915 * 15 14 13 33 33 H 1.09005 * 110.31173 * 239.76253 * 15 14 13 34 34 H 1.08998 * 110.72709 * 96.45063 * 16 15 14 35 35 H 1.09001 * 110.72907 * 219.73541 * 16 15 14 36 36 H 1.09000 * 109.47212 * 60.73077 * 19 17 13 37 37 H 1.08997 * 109.47331 * 180.73531 * 19 17 13 38 38 H 1.08999 * 109.51047 * 297.54370 * 21 20 19 39 39 H 1.09003 * 109.50343 * 57.67589 * 21 20 19 40 40 H 1.08996 * 109.51100 * 296.91792 * 22 21 20 41 41 H 1.08999 * 109.50723 * 176.78567 * 22 21 20 42 42 H 1.09003 * 109.50450 * 298.73275 * 24 23 22 43 43 H 1.09003 * 109.50654 * 178.60431 * 24 23 22 44 44 H 1.09003 * 109.50259 * 302.32018 * 25 20 19 45 45 H 1.08990 * 109.50826 * 62.40832 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3907 0.0016 10 6 1.9974 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0011 12 6 1.2439 -4.8629 0.0022 13 7 2.1926 -5.9760 0.1405 14 6 2.8519 -5.9491 1.4641 15 6 3.0857 -7.4126 1.8822 16 6 2.4917 -8.2623 0.7354 17 6 1.4934 -7.2841 0.0629 18 1 0.5554 -7.2524 0.6173 19 6 1.2479 -7.6796 -1.3945 20 7 0.4323 -6.6491 -2.0509 21 6 -0.9585 -6.6968 -1.5766 22 6 -1.7568 -5.5712 -2.2395 23 8 -1.6648 -5.7013 -3.6607 24 6 -0.3242 -5.6585 -4.1571 25 6 0.4887 -6.7850 -3.5136 26 1 -0.4850 0.8400 -0.0004 27 1 0.3535 -2.3907 0.0016 28 1 0.6962 -4.9666 -0.9345 29 1 0.5428 -4.8773 0.8366 30 1 2.2071 -5.4540 2.1902 31 1 3.8055 -5.4254 1.3967 32 1 4.1525 -7.6106 1.9863 33 1 2.5689 -7.6260 2.8179 34 1 3.2703 -8.5612 0.0337 35 1 1.9719 -9.1348 1.1311 36 1 2.2029 -7.7712 -1.9120 37 1 0.7232 -8.6344 -1.4285 38 1 -1.3995 -7.6587 -1.8380 39 1 -0.9785 -6.5686 -0.4943 40 1 -1.3488 -4.6074 -1.9351 41 1 -2.8013 -5.6375 -1.9348 42 1 0.1255 -4.6972 -3.9084 43 1 -0.3325 -5.7881 -5.2394 44 1 1.5251 -6.7212 -3.8453 45 1 0.0716 -7.7486 -3.8060 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174026979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:16 Heat of formation + Delta-G solvation = -83.342811 kcal Electronic energy + Delta-G solvation = -25852.638463 eV Core-core repulsion = 22290.393708 eV Total energy + Delta-G solvation = -3562.244755 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.08036 -40.12445 -39.10325 -36.55047 -35.89021 -33.39422 -32.89754 -32.15241 -31.39309 -28.28705 -27.97134 -26.00472 -25.00306 -24.58417 -22.11076 -21.38303 -21.03380 -20.76063 -19.81703 -17.68858 -17.49714 -17.20968 -17.03828 -16.60804 -16.39623 -16.01776 -15.96258 -15.56166 -15.53286 -15.23428 -14.93144 -14.82730 -14.30896 -13.71983 -13.52120 -13.39334 -13.18013 -12.91869 -12.85856 -12.73253 -12.38604 -12.34973 -12.30632 -12.14783 -12.10952 -11.93262 -11.90117 -11.49007 -11.45718 -11.37232 -10.63583 -10.25987 -9.97554 -9.27425 -9.06215 -8.44395 -5.92672 1.36255 1.40280 1.54865 2.11827 2.29857 2.74013 2.91780 2.97628 3.23105 3.43791 3.78697 3.88460 3.95531 4.02379 4.04138 4.13720 4.22283 4.29908 4.33102 4.37707 4.43312 4.51816 4.61574 4.63861 4.68436 4.73089 4.76820 4.82858 4.89695 4.98813 5.03490 5.04194 5.07044 5.12493 5.28784 5.38037 5.42327 5.94155 6.00399 6.01964 6.16399 6.18166 6.27463 6.64580 7.16325 7.60482 8.17604 8.73597 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.012527 B = 0.005377 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.675966 B = 5206.321584 C = 6878.256899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.014 4.014 3 Si 0.991 3.009 4 H -0.275 1.275 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.329 4.329 8 H 0.075 0.925 9 N -0.578 5.578 10 C 0.443 3.557 11 O -0.618 6.618 12 C 0.049 3.951 13 N -0.492 5.492 14 C 0.039 3.961 15 C -0.122 4.122 16 C -0.106 4.106 17 C 0.065 3.935 18 H 0.055 0.945 19 C 0.079 3.921 20 N -0.551 5.551 21 C 0.020 3.980 22 C 0.056 3.944 23 O -0.400 6.400 24 C 0.059 3.941 25 C 0.027 3.973 26 H 0.276 0.724 27 H 0.393 0.607 28 H 0.136 0.864 29 H 0.043 0.957 30 H 0.021 0.979 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.041 0.959 41 H 0.116 0.884 42 H 0.038 0.962 43 H 0.117 0.883 44 H 0.087 0.913 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.098 -18.842 -2.263 19.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.815 3.185 4 H -0.199 1.199 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.459 4.459 8 H 0.093 0.907 9 N -0.216 5.216 10 C 0.231 3.769 11 O -0.504 6.504 12 C -0.083 4.083 13 N -0.217 5.217 14 C -0.089 4.089 15 C -0.160 4.160 16 C -0.144 4.144 17 C -0.043 4.043 18 H 0.073 0.927 19 C -0.049 4.049 20 N -0.277 5.277 21 C -0.108 4.108 22 C -0.020 4.020 23 O -0.318 6.318 24 C -0.018 4.018 25 C -0.100 4.100 26 H 0.086 0.914 27 H 0.226 0.774 28 H 0.154 0.846 29 H 0.061 0.939 30 H 0.039 0.961 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.118 0.882 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.059 0.941 41 H 0.134 0.866 42 H 0.057 0.943 43 H 0.135 0.865 44 H 0.106 0.894 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.013 -18.191 -2.690 18.634 hybrid contribution -0.678 0.713 0.727 1.223 sum -3.690 -17.478 -1.963 17.971 Atomic orbital electron populations 1.69684 1.06776 1.29056 1.50833 1.26007 0.96545 1.02267 0.96516 0.84895 0.77973 0.77244 0.78357 1.19941 1.19560 1.19526 1.19657 0.92515 0.84111 1.49615 0.90653 1.41929 1.09061 1.04741 1.65844 1.20962 0.88313 0.86101 0.81509 1.90460 1.15842 1.88000 1.56130 1.22242 0.93497 0.88356 1.04198 1.64263 1.26656 1.00974 1.29772 1.22770 0.98903 0.97981 0.89286 1.22373 1.02237 0.92291 0.99098 1.22491 0.98058 0.97057 0.96778 1.22966 0.96273 0.89061 0.96049 0.92689 1.22053 0.97621 0.92022 0.93216 1.62092 1.10147 1.49559 1.05857 1.22831 0.88250 0.98811 1.00885 1.22800 1.01572 0.97308 0.80355 1.87933 1.27460 1.94265 1.22191 1.22769 0.81930 0.97500 0.99598 1.22705 1.01538 0.98319 0.87482 0.91417 0.77386 0.84640 0.93895 0.96100 0.93193 0.90576 0.90198 0.90382 0.88247 0.90394 0.91812 0.92616 0.89421 0.94065 0.86580 0.94343 0.86545 0.89423 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.28 13.05 21.66 0.28 -51.00 16 2 C -0.01 -0.78 5.50 84.92 0.47 -0.31 16 3 Si 0.99 44.38 29.55 68.60 2.03 46.41 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.33 -19.49 9.68 84.04 0.81 -18.68 16 8 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 9 N -0.58 -31.37 5.29 -306.99 -1.62 -32.99 16 10 C 0.44 22.63 7.47 87.66 0.66 23.28 16 11 O -0.62 -36.23 14.62 -3.05 -0.04 -36.27 16 12 C 0.05 1.86 4.76 85.56 0.41 2.26 16 13 N -0.49 -16.76 4.68 -862.45 -4.04 -20.79 16 14 C 0.04 1.32 5.66 86.44 0.49 1.81 16 15 C -0.12 -2.78 6.92 31.47 0.22 -2.57 16 16 C -0.11 -1.98 6.52 31.86 0.21 -1.77 16 17 C 0.06 1.52 2.37 45.32 0.11 1.63 16 18 H 0.06 1.23 6.85 -2.38 -0.02 1.21 16 19 C 0.08 1.63 4.74 86.30 0.41 2.04 16 20 N -0.55 -13.14 2.32 -895.22 -2.07 -15.21 16 21 C 0.02 0.42 4.60 86.31 0.40 0.82 16 22 C 0.06 1.36 6.96 72.01 0.50 1.86 16 23 O -0.40 -10.64 10.83 -148.98 -1.61 -12.25 16 24 C 0.06 1.42 7.01 72.01 0.50 1.93 16 25 C 0.03 0.59 5.62 86.31 0.48 1.08 16 26 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 27 H 0.39 20.42 7.90 -92.71 -0.73 19.69 16 28 H 0.14 4.92 4.40 -2.39 -0.01 4.91 16 29 H 0.04 1.54 7.93 -2.39 -0.02 1.52 16 30 H 0.02 0.74 7.64 -2.39 -0.02 0.73 16 31 H 0.05 2.07 7.34 -2.39 -0.02 2.06 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 33 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.08 1.45 8.02 -2.39 -0.02 1.43 16 35 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.08 1.73 7.88 -2.39 -0.02 1.71 16 37 H 0.06 1.01 8.05 -2.39 -0.02 0.99 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 1.78 6.55 -2.39 -0.02 1.76 16 40 H 0.04 1.19 7.80 -2.39 -0.02 1.17 16 41 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.09 1.88 8.04 -2.39 -0.02 1.86 16 45 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -71.65 348.45 -1.17 -72.82 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: 0.25 Total: 35.91 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 5.66 Total: 13.38 kcal Atomic # 7 Polarization: -112.54 SS G_CDS: -7.45 Total: -119.99 kcal Atomic # 8 Polarization: -46.87 SS G_CDS: -1.66 Total: -48.53 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -71.65 -1.17 -72.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174026979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.527 kcal (2) G-P(sol) polarization free energy of solvation -71.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds