Wall clock time and date at job start Tue Mar 31 2020 03:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.47559 * 2 1 4 4 C 1.50699 * 109.47141 * 239.99467 * 2 1 3 5 5 H 1.08006 * 119.99989 * 240.00163 * 4 2 1 6 6 C 1.37878 * 120.00157 * 60.00358 * 4 2 1 7 7 N 1.31506 * 119.99754 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99881 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47374 * 60.00302 * 8 6 4 10 10 H 1.48504 * 109.46666 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47421 * 299.99640 * 8 6 4 12 12 N 1.46498 * 109.46920 * 119.99827 * 2 1 3 13 13 C 1.46500 * 120.00274 * 59.99924 * 12 2 1 14 14 C 1.34779 * 120.00090 * 239.99898 * 12 2 1 15 15 O 1.21661 * 119.99888 * 2.00386 * 14 12 2 16 16 C 1.46733 * 120.00379 * 181.99893 * 14 12 2 17 17 N 1.29532 * 119.59116 * 352.85669 * 16 14 12 18 18 N 1.39857 * 121.25884 * 180.38086 * 17 16 14 19 19 C 1.46505 * 119.79546 * 198.88909 * 18 17 16 20 20 C 1.52999 * 109.46679 * 269.72340 * 19 18 17 21 21 O 1.42899 * 109.47507 * 65.00028 * 20 19 18 22 22 C 1.34746 * 120.41009 * 18.60217 * 18 17 16 23 23 O 1.21250 * 120.12840 * 179.97438 * 22 18 17 24 24 C 1.50778 * 119.75255 * 0.02562 * 22 18 17 25 25 C 1.50546 * 119.54808 * 172.57137 * 16 14 12 26 26 H 1.09006 * 109.46893 * 60.00393 * 1 2 3 27 27 H 1.08995 * 109.47559 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47560 * 300.00810 * 1 2 3 29 29 H 0.97001 * 120.00275 * 179.97438 * 7 6 4 30 30 H 1.09009 * 109.46963 * 263.77487 * 13 12 2 31 31 H 1.08995 * 109.47234 * 23.77342 * 13 12 2 32 32 H 1.09000 * 109.47606 * 143.77741 * 13 12 2 33 33 H 1.08998 * 109.47423 * 149.72513 * 19 18 17 34 34 H 1.08998 * 109.47479 * 29.71579 * 19 18 17 35 35 H 1.09008 * 109.47042 * 304.99470 * 20 19 18 36 36 H 1.08998 * 109.47332 * 185.00298 * 20 19 18 37 37 H 0.96696 * 114.00136 * 180.02562 * 21 20 19 38 38 H 1.08989 * 109.51482 * 86.65591 * 24 22 18 39 39 H 1.08997 * 109.51146 * 206.81622 * 24 22 18 40 40 H 1.08992 * 109.44990 * 25.78737 * 25 16 14 41 41 H 1.08999 * 109.42768 * 265.85159 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9437 0.8300 -2.6035 8 14 2.3226 -1.1199 -4.0078 9 1 1.8280 -2.5201 -4.0080 10 1 1.8270 -0.4203 -5.2204 11 1 3.8075 -1.1194 -4.0076 12 7 2.0182 -0.6906 1.1962 13 6 1.6643 -2.0931 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0570 1.1393 1.9096 16 6 3.3183 -0.7394 3.2589 17 7 2.9223 -1.9465 3.5116 18 7 3.3941 -2.6467 4.6265 19 6 3.2739 -4.1060 4.6742 20 6 1.9421 -4.4869 5.3240 21 8 0.8644 -4.0456 4.4958 22 6 3.9639 -1.9879 5.6547 23 8 4.3708 -2.6000 6.6190 24 6 4.0926 -0.4865 5.6020 25 6 4.3157 -0.0510 4.1521 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8898 29 1 0.7097 1.1616 -3.4845 30 1 0.8007 -2.1451 2.0914 31 1 1.4216 -2.5686 0.4778 32 1 2.5070 -2.6094 1.8879 33 1 4.0951 -4.5194 5.2596 34 1 3.3116 -4.5070 3.6613 35 1 1.8664 -4.0123 6.3024 36 1 1.8911 -5.5694 5.4404 37 1 -0.0122 -4.2535 4.8470 38 1 3.1797 -0.0293 5.9835 39 1 4.9402 -0.1722 6.2109 40 1 4.1883 1.0287 4.0739 41 1 5.3256 -0.3206 3.8433 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270765748.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:16 Heat of formation + Delta-G solvation = -55.101077 kcal Electronic energy + Delta-G solvation = -25198.443611 eV Core-core repulsion = 21501.590414 eV Total energy + Delta-G solvation = -3696.853196 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.81562 -39.20097 -37.18794 -36.85074 -35.46825 -34.08182 -32.99243 -31.50869 -29.77582 -28.90699 -26.24535 -25.43816 -25.22063 -23.92865 -22.88223 -21.15888 -19.34788 -17.88759 -17.63963 -17.43532 -16.85198 -16.43718 -16.03967 -15.48409 -15.40601 -14.80396 -14.65139 -14.42746 -13.95980 -13.75133 -13.29794 -13.14227 -12.81167 -12.64584 -12.33235 -12.29716 -12.18249 -11.90862 -11.60911 -11.51408 -11.15501 -11.07792 -10.84281 -10.70226 -10.49551 -10.26041 -10.17403 -10.16534 -9.67679 -9.16263 -9.03468 -8.71416 -8.43467 -7.61548 -6.07952 -4.15995 1.14330 2.16806 2.39672 3.28701 3.33617 3.34928 3.57098 3.69024 3.97378 4.16518 4.38695 4.48441 4.70078 4.87876 4.91711 4.93478 4.99767 5.14956 5.23268 5.30646 5.44550 5.54631 5.60564 5.68557 6.01541 6.14850 6.19478 6.38372 6.70415 6.79585 6.86718 7.05521 7.37194 7.48522 7.49954 7.59047 7.70231 7.91248 8.00677 8.16624 8.45194 8.75332 8.93643 9.50003 10.97401 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.020027 B = 0.004381 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.745162 B = 6390.241829 C = 6979.375407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.255 3.745 3 H 0.066 0.934 4 C -0.527 4.527 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.561 5.561 13 C 0.082 3.918 14 C 0.555 3.445 15 O -0.543 6.543 16 C 0.081 3.919 17 N -0.184 5.184 18 N -0.458 5.458 19 C 0.134 3.866 20 C 0.063 3.937 21 O -0.555 6.555 22 C 0.494 3.506 23 O -0.533 6.533 24 C -0.141 4.141 25 C -0.107 4.107 26 H 0.094 0.906 27 H 0.031 0.969 28 H 0.012 0.988 29 H 0.264 0.736 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.045 0.955 36 H 0.058 0.942 37 H 0.376 0.624 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.215 -8.496 14.977 17.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.156 3.844 3 H 0.083 0.917 4 C -0.565 4.565 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.290 5.290 13 C -0.062 4.062 14 C 0.338 3.662 15 O -0.420 6.420 16 C -0.112 4.112 17 N 0.004 4.996 18 N -0.278 5.278 19 C 0.013 3.987 20 C -0.017 4.017 21 O -0.360 6.360 22 C 0.283 3.717 23 O -0.407 6.407 24 C -0.181 4.181 25 C -0.147 4.147 26 H 0.113 0.887 27 H 0.051 0.949 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.122 0.878 34 H 0.116 0.884 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.222 0.778 38 H 0.124 0.876 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.449 -8.657 14.665 17.205 hybrid contribution 0.247 -0.323 -0.076 0.414 sum 2.696 -8.980 14.589 17.342 Atomic orbital electron populations 1.22075 0.97768 0.99663 1.00878 1.19082 0.91207 0.94552 0.79588 0.91659 1.21257 1.32058 1.13104 0.90125 0.92162 1.24873 0.94888 0.94959 0.98922 1.69864 1.36207 1.22501 1.23922 0.86537 0.79223 0.79596 0.81920 1.20209 1.21175 1.20247 1.48331 1.45795 1.12508 1.22356 1.22132 1.00939 0.81824 1.01319 1.17295 0.80696 0.86418 0.81816 1.90801 1.60450 1.15102 1.75658 1.25282 0.96517 0.92387 0.97058 1.75681 1.15270 1.07534 1.01140 1.49245 1.56647 1.07433 1.14454 1.21580 0.96732 0.76805 1.03599 1.22504 0.87804 0.97885 0.93464 1.86652 1.16533 1.83253 1.49512 1.21363 0.76356 0.91411 0.82566 1.90694 1.47784 1.69802 1.32422 1.21835 1.06246 0.91330 0.98670 1.20883 0.98411 1.04217 0.91151 0.88731 0.94945 0.96896 0.92584 0.92980 0.90804 0.89759 0.87791 0.88449 0.93632 0.92435 0.77825 0.87639 0.86712 0.86541 0.88498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 8.97 37.15 0.33 -3.12 16 2 C 0.26 6.43 2.63 -69.09 -0.18 6.25 16 3 H 0.07 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.53 -14.01 7.95 -34.44 -0.27 -14.28 16 5 H 0.06 1.58 7.44 -52.48 -0.39 1.19 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.65 11.32 55.43 0.63 -24.03 16 8 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.56 -12.04 2.75 -176.80 -0.49 -12.53 16 13 C 0.08 1.49 8.23 59.85 0.49 1.98 16 14 C 0.55 11.33 7.63 -12.83 -0.10 11.23 16 15 O -0.54 -12.63 15.54 5.22 0.08 -12.55 16 16 C 0.08 1.29 6.67 -80.21 -0.53 0.76 16 17 N -0.18 -2.79 7.04 34.88 0.25 -2.54 16 18 N -0.46 -6.13 3.41 -60.28 -0.21 -6.34 16 19 C 0.13 1.46 6.08 -4.04 -0.02 1.44 16 20 C 0.06 0.60 7.39 37.16 0.27 0.87 16 21 O -0.56 -6.03 13.61 -35.23 -0.48 -6.51 16 22 C 0.49 6.63 7.55 -10.96 -0.08 6.55 16 23 O -0.53 -8.14 16.67 5.58 0.09 -8.05 16 24 C -0.14 -1.53 6.20 -27.83 -0.17 -1.71 16 25 C -0.11 -1.32 5.90 -27.94 -0.16 -1.49 16 26 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 27 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 28 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 31 H 0.07 1.41 7.12 -51.93 -0.37 1.04 16 32 H 0.08 1.43 5.30 -52.56 -0.28 1.15 16 33 H 0.10 1.02 7.41 -51.93 -0.39 0.64 16 34 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 0.47 8.14 -51.92 -0.42 0.04 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.38 2.51 9.12 45.56 0.42 2.92 16 38 H 0.11 1.07 8.14 -51.94 -0.42 0.64 16 39 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.12 1.44 7.47 -51.93 -0.39 1.05 16 41 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 339.65 15.07 5.12 5.12 Total: -1.00 -32.50 339.65 -5.54 -38.03 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -4.98 Total: 3.49 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: -0.53 Total: 10.16 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 0.18 Total: -45.43 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.31 Total: -27.11 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.50 -5.54 -38.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270765748.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.068 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds