Wall clock time and date at job start Tue Mar 31 2020 03:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.47559 * 2 1 4 4 C 1.50699 * 109.47141 * 239.99467 * 2 1 3 5 5 H 1.08006 * 119.99989 * 240.00163 * 4 2 1 6 6 C 1.37878 * 120.00157 * 60.00358 * 4 2 1 7 7 N 1.31506 * 119.99754 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99881 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47374 * 60.00302 * 8 6 4 10 10 H 1.48504 * 109.46666 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47421 * 299.99640 * 8 6 4 12 12 N 1.46498 * 109.46920 * 119.99827 * 2 1 3 13 13 C 1.46500 * 120.00274 * 59.99924 * 12 2 1 14 14 C 1.34779 * 120.00090 * 239.99898 * 12 2 1 15 15 O 1.21661 * 119.99888 * 2.00386 * 14 12 2 16 16 C 1.46733 * 120.00379 * 181.99893 * 14 12 2 17 17 N 1.29532 * 119.59116 * 352.85669 * 16 14 12 18 18 N 1.39857 * 121.25884 * 180.38086 * 17 16 14 19 19 C 1.46505 * 119.79546 * 198.88909 * 18 17 16 20 20 C 1.52999 * 109.46679 * 269.72340 * 19 18 17 21 21 O 1.42899 * 109.47507 * 65.00028 * 20 19 18 22 22 C 1.34746 * 120.41009 * 18.60217 * 18 17 16 23 23 O 1.21250 * 120.12840 * 179.97438 * 22 18 17 24 24 C 1.50778 * 119.75255 * 0.02562 * 22 18 17 25 25 C 1.50546 * 119.54808 * 172.57137 * 16 14 12 26 26 H 1.09006 * 109.46893 * 60.00393 * 1 2 3 27 27 H 1.08995 * 109.47559 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47560 * 300.00810 * 1 2 3 29 29 H 0.97001 * 120.00275 * 179.97438 * 7 6 4 30 30 H 1.09009 * 109.46963 * 263.77487 * 13 12 2 31 31 H 1.08995 * 109.47234 * 23.77342 * 13 12 2 32 32 H 1.09000 * 109.47606 * 143.77741 * 13 12 2 33 33 H 1.08998 * 109.47423 * 149.72513 * 19 18 17 34 34 H 1.08998 * 109.47479 * 29.71579 * 19 18 17 35 35 H 1.09008 * 109.47042 * 304.99470 * 20 19 18 36 36 H 1.08998 * 109.47332 * 185.00298 * 20 19 18 37 37 H 0.96696 * 114.00136 * 180.02562 * 21 20 19 38 38 H 1.08989 * 109.51482 * 86.65591 * 24 22 18 39 39 H 1.08997 * 109.51146 * 206.81622 * 24 22 18 40 40 H 1.08992 * 109.44990 * 25.78737 * 25 16 14 41 41 H 1.08999 * 109.42768 * 265.85159 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9437 0.8300 -2.6035 8 14 2.3226 -1.1199 -4.0078 9 1 1.8280 -2.5201 -4.0080 10 1 1.8270 -0.4203 -5.2204 11 1 3.8075 -1.1194 -4.0076 12 7 2.0182 -0.6906 1.1962 13 6 1.6643 -2.0931 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0570 1.1393 1.9096 16 6 3.3183 -0.7394 3.2589 17 7 2.9223 -1.9465 3.5116 18 7 3.3941 -2.6467 4.6265 19 6 3.2739 -4.1060 4.6742 20 6 1.9421 -4.4869 5.3240 21 8 0.8644 -4.0456 4.4958 22 6 3.9639 -1.9879 5.6547 23 8 4.3708 -2.6000 6.6190 24 6 4.0926 -0.4865 5.6020 25 6 4.3157 -0.0510 4.1521 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8898 29 1 0.7097 1.1616 -3.4845 30 1 0.8007 -2.1451 2.0914 31 1 1.4216 -2.5686 0.4778 32 1 2.5070 -2.6094 1.8879 33 1 4.0951 -4.5194 5.2596 34 1 3.3116 -4.5070 3.6613 35 1 1.8664 -4.0123 6.3024 36 1 1.8911 -5.5694 5.4404 37 1 -0.0122 -4.2535 4.8470 38 1 3.1797 -0.0293 5.9835 39 1 4.9402 -0.1722 6.2109 40 1 4.1883 1.0287 4.0739 41 1 5.3256 -0.3206 3.8433 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270765748.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:15 Heat of formation + Delta-G solvation = -79.332788 kcal Electronic energy + Delta-G solvation = -25199.494376 eV Core-core repulsion = 21501.590414 eV Total energy + Delta-G solvation = -3697.903962 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.95302 -40.71938 -38.27488 -37.81209 -37.22762 -35.10941 -34.81572 -32.78550 -31.20389 -30.22738 -27.75749 -27.27659 -26.52035 -25.22208 -23.86939 -22.62932 -20.89825 -19.01497 -18.87926 -18.39023 -18.36139 -17.88844 -17.25845 -17.09765 -16.65502 -16.22253 -16.18027 -15.73338 -15.03724 -14.80710 -14.63814 -14.45726 -14.25520 -13.81903 -13.76523 -13.63745 -13.43400 -13.22925 -12.99373 -12.94881 -12.71729 -12.65148 -12.58805 -12.17185 -12.12679 -12.05413 -11.69992 -11.22645 -11.10365 -10.87433 -10.51598 -10.37412 -9.81831 -9.35361 -8.12012 -6.28037 -0.13198 1.09608 1.31363 1.45528 1.47041 1.54574 2.08275 2.21918 2.46422 2.87654 3.16469 3.41407 3.50004 3.52478 3.91155 4.01899 4.11105 4.14744 4.23487 4.46789 4.59859 4.63848 4.71404 4.73818 4.78450 4.80224 4.86334 4.94065 5.03016 5.10038 5.15146 5.33425 5.48502 5.59241 5.68181 6.01777 6.17055 6.48772 6.69572 6.76563 6.83275 6.94346 7.19474 7.43719 8.92417 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.020027 B = 0.004381 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.745162 B = 6390.241829 C = 6979.375407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.260 3.740 3 H 0.020 0.980 4 C -0.540 4.540 5 H 0.060 0.940 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.964 3.036 9 H -0.265 1.265 10 H -0.283 1.283 11 H -0.276 1.276 12 N -0.572 5.572 13 C 0.092 3.908 14 C 0.551 3.449 15 O -0.579 6.579 16 C 0.074 3.926 17 N -0.181 5.181 18 N -0.456 5.456 19 C 0.123 3.877 20 C 0.067 3.933 21 O -0.579 6.579 22 C 0.492 3.508 23 O -0.550 6.550 24 C -0.133 4.133 25 C -0.100 4.100 26 H 0.071 0.929 27 H 0.043 0.957 28 H 0.021 0.979 29 H 0.265 0.735 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.037 0.963 36 H 0.087 0.913 37 H 0.392 0.608 38 H 0.116 0.884 39 H 0.141 0.859 40 H 0.116 0.884 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.783 -10.282 16.000 19.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.158 3.842 3 H 0.038 0.962 4 C -0.578 4.578 5 H 0.079 0.921 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.789 3.211 9 H -0.190 1.190 10 H -0.209 1.209 11 H -0.202 1.202 12 N -0.301 5.301 13 C -0.051 4.051 14 C 0.336 3.664 15 O -0.458 6.458 16 C -0.119 4.119 17 N 0.006 4.994 18 N -0.276 5.276 19 C 0.002 3.998 20 C -0.012 4.012 21 O -0.386 6.386 22 C 0.281 3.719 23 O -0.426 6.426 24 C -0.172 4.172 25 C -0.140 4.140 26 H 0.090 0.910 27 H 0.062 0.938 28 H 0.040 0.960 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.118 0.882 33 H 0.133 0.867 34 H 0.119 0.881 35 H 0.055 0.945 36 H 0.105 0.895 37 H 0.241 0.759 38 H 0.134 0.866 39 H 0.159 0.841 40 H 0.134 0.866 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.003 -10.479 15.717 19.127 hybrid contribution 0.050 0.186 -0.317 0.371 sum 3.053 -10.293 15.400 18.773 Atomic orbital electron populations 1.21871 0.96913 1.00089 1.00128 1.18703 0.91829 0.92574 0.81055 0.96173 1.21497 1.32175 1.13168 0.90985 0.92147 1.25674 0.94993 0.95593 1.01815 1.69999 1.37085 1.23699 1.24552 0.85529 0.78454 0.78920 0.78229 1.18961 1.20881 1.20196 1.48296 1.46428 1.13628 1.21727 1.22165 1.01890 0.79989 1.01010 1.17818 0.79805 0.86180 0.82594 1.90771 1.61442 1.16831 1.76784 1.24785 0.97836 0.93007 0.96265 1.75456 1.14741 1.07254 1.01927 1.49400 1.56254 1.08249 1.13731 1.21905 0.98158 0.75395 1.04327 1.22497 0.86751 0.99507 0.92439 1.86591 1.17889 1.83750 1.50386 1.21760 0.75678 0.92339 0.82076 1.90691 1.48490 1.70429 1.32980 1.21889 1.07948 0.89554 0.97847 1.20912 0.97885 1.03836 0.91350 0.91026 0.93755 0.96018 0.92553 0.92104 0.91806 0.88249 0.86663 0.88062 0.94483 0.89484 0.75892 0.86605 0.84105 0.86563 0.87218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.35 8.97 71.98 0.65 -5.70 16 2 C 0.26 13.43 2.63 44.24 0.12 13.54 16 3 H 0.02 1.22 6.90 -2.39 -0.02 1.21 16 4 C -0.54 -29.05 7.95 25.60 0.20 -28.85 16 5 H 0.06 3.17 7.44 -2.91 -0.02 3.15 16 6 C 0.02 1.04 5.30 84.66 0.45 1.49 16 7 N -0.91 -51.81 11.32 21.45 0.24 -51.57 16 8 Si 0.96 42.49 29.54 68.60 2.03 44.51 16 9 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 N -0.57 -24.75 2.75 -831.50 -2.29 -27.04 16 13 C 0.09 3.29 8.23 127.77 1.05 4.34 16 14 C 0.55 22.68 7.63 86.46 0.66 23.34 16 15 O -0.58 -27.70 15.54 -4.22 -0.07 -27.76 16 16 C 0.07 2.28 6.67 45.07 0.30 2.58 16 17 N -0.18 -5.17 7.04 -43.57 -0.31 -5.48 16 18 N -0.46 -11.23 3.41 -463.04 -1.58 -12.81 16 19 C 0.12 2.39 6.08 86.38 0.53 2.91 16 20 C 0.07 1.11 7.39 71.98 0.53 1.64 16 21 O -0.58 -11.32 13.61 -148.98 -2.03 -13.35 16 22 C 0.49 12.00 7.55 87.69 0.66 12.66 16 23 O -0.55 -15.52 16.67 -2.94 -0.05 -15.57 16 24 C -0.13 -2.54 6.20 29.88 0.19 -2.35 16 25 C -0.10 -2.31 5.90 29.81 0.18 -2.13 16 26 H 0.07 3.80 6.07 -2.38 -0.01 3.79 16 27 H 0.04 1.97 7.67 -2.39 -0.02 1.96 16 28 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 30 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 31 H 0.06 2.39 7.12 -2.39 -0.02 2.38 16 32 H 0.10 3.24 5.30 -3.21 -0.02 3.22 16 33 H 0.12 1.99 7.41 -2.39 -0.02 1.97 16 34 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.39 4.43 9.12 -74.06 -0.68 3.75 16 38 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.14 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.12 2.73 7.47 -2.39 -0.02 2.72 16 41 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -70.52 339.65 1.84 -68.68 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.38 Total: 16.91 kcal Atomic # 6 Polarization: 17.96 SS G_CDS: 5.51 Total: 23.46 kcal Atomic # 7 Polarization: -92.96 SS G_CDS: -3.93 Total: -96.89 kcal Atomic # 8 Polarization: -54.54 SS G_CDS: -2.14 Total: -56.68 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -70.52 1.84 -68.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270765748.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.653 kcal (2) G-P(sol) polarization free energy of solvation -70.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds