Wall clock time and date at job start Tue Mar 31 2020 03:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47349 * 2 1 4 4 C 1.50701 * 109.47070 * 120.00599 * 2 1 3 5 5 H 1.07995 * 120.00639 * 119.99805 * 4 2 1 6 6 C 1.37877 * 119.99542 * 300.00039 * 4 2 1 7 7 N 1.31524 * 119.99943 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00506 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.47041 * 89.99820 * 8 6 4 10 10 H 1.48494 * 109.47468 * 210.00055 * 8 6 4 11 11 H 1.48502 * 109.46970 * 330.00414 * 8 6 4 12 12 N 1.46502 * 109.47347 * 240.00121 * 2 1 3 13 13 C 1.46500 * 120.00207 * 300.00513 * 12 2 1 14 14 C 1.34770 * 120.00058 * 119.99636 * 12 2 1 15 15 O 1.21661 * 119.99980 * 2.01238 * 14 12 2 16 16 C 1.46733 * 120.00287 * 182.00501 * 14 12 2 17 17 N 1.29533 * 119.59251 * 352.85214 * 16 14 12 18 18 N 1.39851 * 121.26258 * 180.37792 * 17 16 14 19 19 C 1.46502 * 119.80186 * 198.89520 * 18 17 16 20 20 C 1.52999 * 109.46816 * 269.72703 * 19 18 17 21 21 O 1.42904 * 109.47341 * 64.99989 * 20 19 18 22 22 C 1.34752 * 120.40738 * 18.61786 * 18 17 16 23 23 O 1.21244 * 120.12522 * 179.97438 * 22 18 17 24 24 C 1.50776 * 119.75027 * 0.02562 * 22 18 17 25 25 C 1.50540 * 119.54819 * 172.57731 * 16 14 12 26 26 H 1.09000 * 109.46850 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47174 * 299.99905 * 1 2 3 28 28 H 1.08999 * 109.46888 * 59.99980 * 1 2 3 29 29 H 0.96999 * 119.99876 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.47185 * 263.77024 * 13 12 2 31 31 H 1.09005 * 109.47172 * 23.76790 * 13 12 2 32 32 H 1.08997 * 109.47783 * 143.76633 * 13 12 2 33 33 H 1.08998 * 109.47650 * 149.72652 * 19 18 17 34 34 H 1.09000 * 109.47041 * 29.72350 * 19 18 17 35 35 H 1.09001 * 109.47368 * 304.99912 * 20 19 18 36 36 H 1.09001 * 109.47161 * 184.99429 * 20 19 18 37 37 H 0.96696 * 113.99971 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.51260 * 86.66232 * 24 22 18 39 39 H 1.09004 * 109.51240 * 206.81950 * 24 22 18 40 40 H 1.09002 * 109.45042 * 25.78320 * 25 16 14 41 41 H 1.08997 * 109.42947 * 265.84832 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 2.1380 -0.8593 3.5565 8 14 0.6259 1.2796 2.6542 9 1 -0.8021 0.8743 2.6993 10 1 0.9771 1.9950 3.9072 11 1 0.8491 2.1772 1.4924 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4282 14 6 2.7932 -0.0356 -2.0833 15 8 3.1173 1.1180 -1.8727 16 6 3.2461 -0.7137 -3.3032 17 7 3.0153 -1.9793 -3.4547 18 7 3.4381 -2.6621 -4.5996 19 6 2.8292 -3.9486 -4.9466 20 6 3.6240 -5.0815 -4.2943 21 8 3.5151 -4.9828 -2.8728 22 6 4.3984 -2.1414 -5.3887 23 8 4.7613 -2.7380 -6.3798 24 6 5.0205 -0.8146 -5.0338 25 6 3.9675 0.0722 -4.3653 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.9033 -0.5282 4.4375 30 1 2.4692 -2.7350 -1.0698 31 1 0.7453 -2.3294 -0.8920 32 1 1.5155 -2.2587 -2.4951 33 1 2.8385 -4.0749 -6.0292 34 1 1.8006 -3.9725 -4.5868 35 1 4.6718 -5.0043 -4.5845 36 1 3.2256 -6.0413 -4.6233 37 1 3.9960 -5.6708 -2.3928 38 1 5.8519 -0.9744 -4.3473 39 1 5.3833 -0.3287 -5.9396 40 1 4.4551 0.9345 -3.9105 41 1 3.2516 0.4129 -5.1133 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270765749.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:19 Heat of formation + Delta-G solvation = -45.086016 kcal Electronic energy + Delta-G solvation = -25269.049680 eV Core-core repulsion = 21572.630769 eV Total energy + Delta-G solvation = -3696.418910 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.87160 -39.35077 -37.20608 -36.89297 -35.67695 -34.11760 -32.93758 -31.64704 -30.25568 -29.31684 -26.37844 -25.55121 -25.12343 -24.04429 -22.93868 -21.27435 -19.37265 -17.91928 -17.73251 -17.48734 -16.90672 -16.59305 -16.18261 -15.68727 -15.49605 -14.98553 -14.83026 -14.29768 -14.02165 -13.76703 -13.36267 -13.20572 -12.97328 -12.81192 -12.52592 -12.37629 -12.26879 -12.17264 -11.98041 -11.76794 -11.58378 -11.24060 -11.09771 -10.73626 -10.51031 -10.17190 -10.13165 -9.81388 -9.59303 -9.34751 -9.11960 -8.76353 -8.63584 -7.76648 -6.14044 -4.15006 1.06697 2.11555 2.35438 3.23464 3.36967 3.38494 3.45957 3.54727 3.90753 4.17075 4.34949 4.43353 4.60929 4.85272 4.90005 4.91664 4.94581 5.14794 5.17392 5.25911 5.41687 5.51751 5.57900 5.61834 5.94807 5.99930 6.09562 6.20983 6.28397 6.36750 6.45067 6.69541 6.83540 7.06967 7.26600 7.50544 7.57576 7.59699 7.86347 8.10158 8.42943 8.69505 8.89253 9.45926 10.98633 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.021473 B = 0.004573 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.638101 B = 6121.204841 C = 6876.375381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.227 3.773 3 H 0.065 0.935 4 C -0.526 4.526 5 H 0.081 0.919 6 C 0.076 3.924 7 N -0.894 5.894 8 Si 0.882 3.118 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.557 5.557 13 C 0.085 3.915 14 C 0.559 3.441 15 O -0.542 6.542 16 C 0.079 3.921 17 N -0.180 5.180 18 N -0.458 5.458 19 C 0.135 3.865 20 C 0.062 3.938 21 O -0.555 6.555 22 C 0.495 3.505 23 O -0.531 6.531 24 C -0.142 4.142 25 C -0.106 4.106 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.034 0.966 29 H 0.266 0.734 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.046 0.954 36 H 0.058 0.942 37 H 0.377 0.623 38 H 0.107 0.893 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.926 -5.467 -17.230 18.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.125 3.875 3 H 0.083 0.917 4 C -0.564 4.564 5 H 0.099 0.901 6 C -0.127 4.127 7 N -0.531 5.531 8 Si 0.712 3.288 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.286 5.286 13 C -0.059 4.059 14 C 0.342 3.658 15 O -0.419 6.419 16 C -0.115 4.115 17 N 0.008 4.992 18 N -0.277 5.277 19 C 0.013 3.987 20 C -0.018 4.018 21 O -0.360 6.360 22 C 0.284 3.716 23 O -0.405 6.405 24 C -0.182 4.182 25 C -0.146 4.146 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.122 0.878 34 H 0.115 0.885 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.224 0.776 38 H 0.125 0.875 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.562 -5.516 -17.301 18.168 hybrid contribution 0.195 0.560 0.060 0.596 sum 0.756 -4.956 -17.241 17.955 Atomic orbital electron populations 1.22470 0.98773 1.01340 0.99400 1.19431 0.90199 0.95245 0.82606 0.91726 1.21130 1.32778 1.14271 0.88259 0.90142 1.24857 0.95665 0.96561 0.95588 1.69877 1.45126 1.40178 0.97960 0.86931 0.80453 0.83858 0.77539 1.20381 1.22129 1.18740 1.47940 1.46511 1.12628 1.21477 1.22155 1.01247 0.80997 1.01487 1.17258 0.80521 0.85985 0.82022 1.90800 1.57942 1.16749 1.76440 1.25145 0.97739 0.90856 0.97745 1.75636 1.12638 1.08113 1.02847 1.49240 1.36329 1.20201 1.21959 1.21592 0.97941 0.79119 1.00025 1.22499 0.99311 0.97322 0.82629 1.86649 1.76227 1.56223 1.16854 1.21363 0.79866 0.87972 0.82437 1.90697 1.61127 1.62615 1.26058 1.21848 0.99646 0.92500 1.04179 1.20878 0.97993 0.99609 0.96073 0.92302 0.92971 0.94689 0.92426 0.91965 0.91381 0.89692 0.87770 0.88483 0.93620 0.92433 0.77594 0.87481 0.86656 0.86525 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 8.66 37.16 0.32 -3.08 16 2 C 0.23 5.37 2.22 -69.08 -0.15 5.22 16 3 H 0.07 1.67 5.95 -51.93 -0.31 1.36 16 4 C -0.53 -14.42 8.95 -34.44 -0.31 -14.73 16 5 H 0.08 2.40 7.89 -52.49 -0.41 1.99 16 6 C 0.08 2.14 5.45 -17.82 -0.10 2.05 16 7 N -0.89 -26.70 13.96 55.43 0.77 -25.92 16 8 Si 0.88 21.43 24.37 -169.99 -4.14 17.29 16 9 H -0.28 -6.43 6.87 56.52 0.39 -6.04 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 11 H -0.26 -6.24 6.53 56.52 0.37 -5.87 16 12 N -0.56 -11.45 2.75 -176.79 -0.49 -11.94 16 13 C 0.08 1.49 8.50 59.85 0.51 2.00 16 14 C 0.56 10.89 7.63 -12.83 -0.10 10.79 16 15 O -0.54 -11.99 15.54 5.22 0.08 -11.91 16 16 C 0.08 1.20 6.67 -80.21 -0.53 0.66 16 17 N -0.18 -2.64 7.04 34.88 0.25 -2.39 16 18 N -0.46 -5.95 3.41 -60.28 -0.21 -6.15 16 19 C 0.13 1.42 6.08 -4.04 -0.02 1.39 16 20 C 0.06 0.60 7.39 37.16 0.27 0.87 16 21 O -0.55 -6.35 13.61 -35.23 -0.48 -6.83 16 22 C 0.50 6.48 7.55 -10.96 -0.08 6.40 16 23 O -0.53 -7.97 16.67 5.59 0.09 -7.87 16 24 C -0.14 -1.50 6.20 -27.82 -0.17 -1.68 16 25 C -0.11 -1.23 5.90 -27.94 -0.16 -1.40 16 26 H 0.06 1.16 6.67 -51.93 -0.35 0.81 16 27 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.07 1.19 6.44 -51.93 -0.33 0.86 16 32 H 0.09 1.33 5.30 -52.55 -0.28 1.05 16 33 H 0.10 0.98 7.41 -51.93 -0.39 0.59 16 34 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.38 2.86 9.12 45.56 0.42 3.28 16 38 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.12 1.37 7.47 -51.93 -0.39 0.98 16 41 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 332.03 15.07 5.00 5.00 Total: -1.00 -34.17 332.03 -4.42 -38.59 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -4.77 Total: 3.64 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -0.53 Total: 8.50 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.33 Total: -46.41 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.31 Total: -26.62 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.14 Total: 17.29 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.17 -4.42 -38.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270765749.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.496 kcal (2) G-P(sol) polarization free energy of solvation -34.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds