Wall clock time and date at job start Tue Mar 31 2020 05:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99846 * 2 1 4 4 H 1.48506 * 109.46855 * 270.00189 * 3 2 1 5 5 H 1.48501 * 109.47289 * 29.99818 * 3 2 1 6 6 H 1.48500 * 109.47210 * 150.00182 * 3 2 1 7 7 C 1.37877 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99973 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99782 * 180.02562 * 7 2 1 10 10 C 1.53009 * 109.46895 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.46710 * 179.97438 * 10 9 7 12 12 C 1.34780 * 119.99745 * 179.97438 * 11 10 9 13 13 O 1.21589 * 120.00077 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00351 * 179.97438 * 12 11 10 15 15 C 1.46495 * 120.00193 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.47094 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.47236 * 179.97438 * 16 15 14 18 18 N 1.46499 * 109.46981 * 180.02562 * 17 16 15 19 19 C 1.34777 * 119.99553 * 180.02562 * 18 17 16 20 20 O 1.21278 * 120.00088 * 359.97438 * 19 18 17 21 21 C 1.50703 * 119.99745 * 179.97438 * 19 18 17 22 22 C 1.53781 * 113.61417 * 179.97438 * 21 19 18 23 23 C 1.53786 * 87.17350 * 139.93966 * 22 21 19 24 24 C 1.53782 * 113.61283 * 277.49692 * 21 19 18 25 25 H 0.96994 * 120.00059 * 359.97438 * 1 2 3 26 26 H 1.08990 * 109.47555 * 59.99888 * 9 7 2 27 27 H 1.09007 * 109.46998 * 299.99223 * 9 7 2 28 28 H 1.09000 * 109.47217 * 60.00058 * 10 9 7 29 29 H 1.08995 * 109.46818 * 299.99518 * 10 9 7 30 30 H 0.97002 * 120.00550 * 0.02562 * 11 10 9 31 31 H 0.97001 * 119.99668 * 0.02562 * 14 12 11 32 32 H 1.08994 * 109.47106 * 60.00448 * 15 14 12 33 33 H 1.09004 * 109.46972 * 300.00226 * 15 14 12 34 34 H 1.09000 * 109.47314 * 59.99600 * 16 15 14 35 35 H 1.08999 * 109.46658 * 300.00055 * 16 15 14 36 36 H 1.08994 * 109.47005 * 59.99952 * 17 16 15 37 37 H 1.09004 * 109.46932 * 299.99817 * 17 16 15 38 38 H 0.96993 * 120.00243 * 359.97438 * 18 17 16 39 39 H 1.08996 * 112.85169 * 48.79875 * 21 19 18 40 40 H 1.09002 * 113.61445 * 254.52965 * 22 21 19 41 41 H 1.09002 * 113.61408 * 25.34696 * 22 21 19 42 42 H 1.08993 * 113.61491 * 89.15923 * 23 22 21 43 43 H 1.09000 * 113.61138 * 220.06261 * 23 22 21 44 44 H 1.08997 * 113.61668 * 334.56418 * 24 21 19 45 45 H 1.08998 * 113.61674 * 105.38927 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6366 0.0010 11 7 5.4866 -2.6365 0.0009 12 6 6.1605 -3.8037 0.0014 13 8 5.5526 -4.8567 0.0013 14 7 7.5083 -3.8037 0.0008 15 6 8.2407 -5.0724 0.0007 16 6 9.7450 -4.7928 0.0006 17 6 10.5100 -6.1178 0.0012 18 7 11.9504 -5.8501 0.0017 19 6 12.8261 -6.8745 0.0017 20 8 12.4219 -8.0179 0.0017 21 6 14.3078 -6.5991 0.0018 22 6 15.1709 -7.8718 0.0024 23 6 16.1014 -7.1497 -0.9864 24 6 14.8798 -6.3058 -1.3952 25 1 -0.4850 0.8400 0.0004 26 1 3.8746 -0.6800 0.8910 27 1 3.8752 -0.6804 -0.8890 28 1 3.6586 -3.1502 -0.8892 29 1 3.6580 -3.1505 0.8907 30 1 5.9716 -1.7964 0.0014 31 1 7.9933 -2.9637 0.0005 32 1 7.9771 -5.6441 -0.8891 33 1 7.9777 -5.6439 0.8909 34 1 10.0084 -4.2213 0.8906 35 1 10.0082 -4.2212 -0.8893 36 1 10.2468 -6.6897 -0.8886 37 1 10.2467 -6.6891 0.8914 38 1 12.2737 -4.9356 0.0014 39 1 14.6030 -5.8713 0.7575 40 1 15.6364 -8.0833 0.9651 41 1 14.6690 -8.7400 -0.4248 42 1 16.8887 -6.5718 -0.5025 43 1 16.4756 -7.7928 -1.7830 44 1 14.2989 -6.7453 -2.2061 45 1 15.1091 -5.2532 -1.5610 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343864128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:44 Heat of formation + Delta-G solvation = -68.014290 kcal Electronic energy + Delta-G solvation = -22450.560064 eV Core-core repulsion = 18888.980003 eV Total energy + Delta-G solvation = -3561.580061 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.68384 -39.68485 -38.07034 -36.46989 -35.08208 -34.44452 -32.81987 -31.61839 -29.90933 -27.66431 -26.16266 -25.55774 -24.26287 -22.19764 -21.39078 -20.81280 -20.65692 -19.82222 -18.17882 -17.65891 -16.93187 -16.65844 -16.42606 -15.95804 -15.71511 -15.31272 -14.79875 -14.59373 -14.28278 -13.86885 -13.78293 -13.63561 -13.34045 -12.98001 -12.88785 -12.62409 -12.54899 -12.34540 -12.00102 -11.70571 -11.52513 -11.46970 -11.18846 -11.08085 -10.93594 -10.39070 -10.28093 -10.10242 -9.98375 -9.78168 -9.51311 -9.32536 -9.12035 -8.62847 -8.39913 -6.10896 -4.10906 2.21766 2.62484 3.02936 3.24399 3.31811 3.33217 3.50370 3.95952 4.04457 4.18080 4.27735 4.37298 4.37391 4.52121 4.58051 4.60975 4.77639 5.00994 5.12642 5.14054 5.21928 5.24518 5.25440 5.35206 5.44855 5.46975 5.56391 5.71772 5.73639 5.87173 5.99434 6.07952 6.24906 6.48038 6.59048 6.80793 7.01626 7.05051 7.24381 7.28156 7.67477 7.81646 8.27553 8.45901 8.88612 8.94265 9.49110 11.02201 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.042851 B = 0.001692 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.270842 B =16544.063895 C =17059.611777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.522 4.522 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.148 3.852 11 N -0.742 5.742 12 C 0.698 3.302 13 O -0.593 6.593 14 N -0.754 5.754 15 C 0.143 3.857 16 C -0.142 4.142 17 C 0.120 3.880 18 N -0.730 5.730 19 C 0.521 3.479 20 O -0.537 6.537 21 C -0.140 4.140 22 C -0.119 4.119 23 C -0.143 4.143 24 C -0.124 4.124 25 H 0.265 0.735 26 H 0.021 0.979 27 H 0.017 0.983 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.391 0.609 31 H 0.393 0.607 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.401 0.599 39 H 0.113 0.887 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.746 -8.044 -0.754 35.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.561 4.561 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.025 3.975 11 N -0.396 5.396 12 C 0.398 3.602 13 O -0.471 6.471 14 N -0.411 5.411 15 C 0.018 3.982 16 C -0.181 4.181 17 C -0.004 4.004 18 N -0.382 5.382 19 C 0.307 3.693 20 O -0.414 6.414 21 C -0.161 4.161 22 C -0.156 4.156 23 C -0.180 4.180 24 C -0.162 4.162 25 H 0.074 0.926 26 H 0.040 0.960 27 H 0.035 0.965 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.224 0.776 31 H 0.227 0.773 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.235 0.765 39 H 0.131 0.869 40 H 0.090 0.910 41 H 0.114 0.886 42 H 0.102 0.898 43 H 0.091 0.909 44 H 0.104 0.896 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 33.650 -9.762 -0.749 35.046 hybrid contribution 0.856 2.328 0.047 2.481 sum 34.506 -7.434 -0.703 35.305 Atomic orbital electron populations 1.69906 1.06280 1.27026 1.50455 1.25001 0.94762 0.99123 0.94407 0.86742 0.80230 0.83569 0.78443 1.20272 1.21287 1.19141 1.20926 0.88651 0.94931 1.51578 0.90568 1.19797 0.97944 0.91429 0.96764 1.21386 0.74724 0.99849 1.01546 1.45522 1.08958 1.06198 1.78907 1.16027 0.81213 0.84871 0.78082 1.90918 1.67707 1.30584 1.57928 1.45067 1.05129 1.08963 1.81986 1.20938 0.88626 0.85757 1.02880 1.21973 0.94940 0.97648 1.03503 1.21234 0.79127 0.96810 1.03198 1.46016 1.06587 1.09600 1.75993 1.20567 0.88359 0.84951 0.75431 1.90716 1.80150 1.21479 1.49018 1.22821 0.91101 1.01681 1.00544 1.22811 0.96058 0.96459 1.00317 1.22874 0.96480 0.99051 0.99604 1.22865 0.97330 1.01033 0.94934 0.92562 0.96039 0.96480 0.92134 0.92112 0.77604 0.77327 0.91364 0.91368 0.90504 0.90500 0.90927 0.90896 0.76506 0.86920 0.90960 0.88647 0.89820 0.90853 0.89633 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 20.92 27.47 -169.99 -4.67 16.25 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 7 C -0.52 -14.65 9.66 -34.44 -0.33 -14.98 16 8 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 9 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 10 C 0.15 3.05 5.61 -4.04 -0.02 3.03 16 11 N -0.74 -12.20 5.56 -65.22 -0.36 -12.56 16 12 C 0.70 11.59 8.57 -86.92 -0.74 10.85 16 13 O -0.59 -12.56 16.34 5.29 0.09 -12.47 16 14 N -0.75 -8.41 5.56 -65.23 -0.36 -8.78 16 15 C 0.14 1.37 5.67 -4.04 -0.02 1.35 16 16 C -0.14 -0.80 5.44 -26.73 -0.15 -0.94 16 17 C 0.12 0.84 5.67 -4.04 -0.02 0.82 16 18 N -0.73 -4.36 5.56 -60.29 -0.33 -4.70 16 19 C 0.52 4.31 7.35 -10.98 -0.08 4.23 16 20 O -0.54 -6.83 15.90 5.56 0.09 -6.74 16 21 C -0.14 -0.74 4.15 -90.96 -0.38 -1.11 16 22 C -0.12 -0.69 7.40 -25.92 -0.19 -0.88 16 23 C -0.14 -0.58 8.10 -25.80 -0.21 -0.79 16 24 C -0.12 -0.52 7.64 -25.80 -0.20 -0.72 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 27 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 28 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.39 5.19 8.49 -40.82 -0.35 4.85 16 31 H 0.39 3.10 8.49 -40.82 -0.35 2.75 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.40 1.24 8.47 -40.82 -0.35 0.90 16 39 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.10 0.74 7.43 -51.93 -0.39 0.35 16 42 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.09 0.45 8.09 -51.93 -0.42 0.03 16 45 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 373.88 15.07 5.63 5.63 Total: -1.00 -36.37 373.88 -9.40 -45.77 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -7.69 Total: 2.04 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -2.56 Total: 2.10 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.29 Total: -52.58 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: 0.17 Total: -19.21 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.37 -9.40 -45.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343864128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.242 kcal (2) G-P(sol) polarization free energy of solvation -36.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds