Wall clock time and date at job start Tue Mar 31 2020 05:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99846 * 2 1 4 4 H 1.48506 * 109.46855 * 270.00189 * 3 2 1 5 5 H 1.48501 * 109.47289 * 29.99818 * 3 2 1 6 6 H 1.48500 * 109.47210 * 150.00182 * 3 2 1 7 7 C 1.37877 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99973 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99782 * 180.02562 * 7 2 1 10 10 C 1.53009 * 109.46895 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.46710 * 179.97438 * 10 9 7 12 12 C 1.34780 * 119.99745 * 179.97438 * 11 10 9 13 13 O 1.21589 * 120.00077 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00351 * 179.97438 * 12 11 10 15 15 C 1.46495 * 120.00193 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.47094 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.47236 * 179.97438 * 16 15 14 18 18 N 1.46499 * 109.46981 * 180.02562 * 17 16 15 19 19 C 1.34777 * 119.99553 * 180.02562 * 18 17 16 20 20 O 1.21278 * 120.00088 * 359.97438 * 19 18 17 21 21 C 1.50703 * 119.99745 * 179.97438 * 19 18 17 22 22 C 1.53781 * 113.61417 * 179.97438 * 21 19 18 23 23 C 1.53786 * 87.17350 * 139.93966 * 22 21 19 24 24 C 1.53782 * 113.61283 * 277.49692 * 21 19 18 25 25 H 0.96994 * 120.00059 * 359.97438 * 1 2 3 26 26 H 1.08990 * 109.47555 * 59.99888 * 9 7 2 27 27 H 1.09007 * 109.46998 * 299.99223 * 9 7 2 28 28 H 1.09000 * 109.47217 * 60.00058 * 10 9 7 29 29 H 1.08995 * 109.46818 * 299.99518 * 10 9 7 30 30 H 0.97002 * 120.00550 * 0.02562 * 11 10 9 31 31 H 0.97001 * 119.99668 * 0.02562 * 14 12 11 32 32 H 1.08994 * 109.47106 * 60.00448 * 15 14 12 33 33 H 1.09004 * 109.46972 * 300.00226 * 15 14 12 34 34 H 1.09000 * 109.47314 * 59.99600 * 16 15 14 35 35 H 1.08999 * 109.46658 * 300.00055 * 16 15 14 36 36 H 1.08994 * 109.47005 * 59.99952 * 17 16 15 37 37 H 1.09004 * 109.46932 * 299.99817 * 17 16 15 38 38 H 0.96993 * 120.00243 * 359.97438 * 18 17 16 39 39 H 1.08996 * 112.85169 * 48.79875 * 21 19 18 40 40 H 1.09002 * 113.61445 * 254.52965 * 22 21 19 41 41 H 1.09002 * 113.61408 * 25.34696 * 22 21 19 42 42 H 1.08993 * 113.61491 * 89.15923 * 23 22 21 43 43 H 1.09000 * 113.61138 * 220.06261 * 23 22 21 44 44 H 1.08997 * 113.61668 * 334.56418 * 24 21 19 45 45 H 1.08998 * 113.61674 * 105.38927 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6366 0.0010 11 7 5.4866 -2.6365 0.0009 12 6 6.1605 -3.8037 0.0014 13 8 5.5526 -4.8567 0.0013 14 7 7.5083 -3.8037 0.0008 15 6 8.2407 -5.0724 0.0007 16 6 9.7450 -4.7928 0.0006 17 6 10.5100 -6.1178 0.0012 18 7 11.9504 -5.8501 0.0017 19 6 12.8261 -6.8745 0.0017 20 8 12.4219 -8.0179 0.0017 21 6 14.3078 -6.5991 0.0018 22 6 15.1709 -7.8718 0.0024 23 6 16.1014 -7.1497 -0.9864 24 6 14.8798 -6.3058 -1.3952 25 1 -0.4850 0.8400 0.0004 26 1 3.8746 -0.6800 0.8910 27 1 3.8752 -0.6804 -0.8890 28 1 3.6586 -3.1502 -0.8892 29 1 3.6580 -3.1505 0.8907 30 1 5.9716 -1.7964 0.0014 31 1 7.9933 -2.9637 0.0005 32 1 7.9771 -5.6441 -0.8891 33 1 7.9777 -5.6439 0.8909 34 1 10.0084 -4.2213 0.8906 35 1 10.0082 -4.2212 -0.8893 36 1 10.2468 -6.6897 -0.8886 37 1 10.2467 -6.6891 0.8914 38 1 12.2737 -4.9356 0.0014 39 1 14.6030 -5.8713 0.7575 40 1 15.6364 -8.0833 0.9651 41 1 14.6690 -8.7400 -0.4248 42 1 16.8887 -6.5718 -0.5025 43 1 16.4756 -7.7928 -1.7830 44 1 14.2989 -6.7453 -2.2061 45 1 15.1091 -5.2532 -1.5610 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343864128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:44 Heat of formation + Delta-G solvation = -96.947034 kcal Electronic energy + Delta-G solvation = -22451.814682 eV Core-core repulsion = 18888.980003 eV Total energy + Delta-G solvation = -3562.834678 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.26027 -40.97616 -38.56342 -37.35417 -36.53194 -35.49084 -34.77252 -32.68545 -31.47840 -28.31127 -26.88896 -26.51528 -25.46138 -22.87986 -22.62455 -22.05878 -21.84486 -20.27201 -19.38285 -18.88988 -18.30482 -17.53751 -17.15892 -16.76431 -16.61307 -16.26875 -16.21358 -15.58876 -15.48293 -15.28974 -14.96498 -14.81964 -14.57958 -13.91081 -13.72766 -13.39415 -13.33451 -13.21082 -13.02756 -12.87792 -12.60497 -12.18511 -12.16405 -12.14347 -12.04634 -11.74217 -11.53215 -11.43547 -11.31163 -11.27563 -10.77327 -10.72729 -10.37295 -10.12513 -9.72711 -8.28400 -6.35968 1.40419 1.43608 1.54831 1.60184 1.68489 2.16724 2.25449 2.38631 3.06709 3.37104 3.54274 3.66732 3.78387 3.92553 3.97955 3.99812 4.00223 4.27794 4.37007 4.46130 4.52075 4.58578 4.70911 4.77344 4.77847 4.80625 4.87379 5.04464 5.07955 5.10146 5.10385 5.18255 5.19888 5.40516 5.43380 5.46345 5.49451 5.54339 5.68034 6.06245 6.24805 6.56357 6.71602 7.17123 7.26645 7.28576 7.61658 8.88518 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.042851 B = 0.001692 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.270842 B =16544.063895 C =17059.611777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.234 1.234 7 C -0.541 4.541 8 H 0.027 0.973 9 C -0.011 4.011 10 C 0.163 3.837 11 N -0.730 5.730 12 C 0.695 3.305 13 O -0.645 6.645 14 N -0.728 5.728 15 C 0.140 3.860 16 C -0.120 4.120 17 C 0.121 3.879 18 N -0.714 5.714 19 C 0.513 3.487 20 O -0.592 6.592 21 C -0.134 4.134 22 C -0.131 4.131 23 C -0.135 4.135 24 C -0.119 4.119 25 H 0.268 0.732 26 H 0.039 0.961 27 H 0.037 0.963 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.412 0.588 31 H 0.415 0.585 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.419 0.581 39 H 0.142 0.858 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.103 0.897 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 38.748 -4.800 -0.665 39.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.784 3.216 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.157 1.157 7 C -0.579 4.579 8 H 0.045 0.955 9 C -0.049 4.049 10 C 0.039 3.961 11 N -0.386 5.386 12 C 0.394 3.606 13 O -0.527 6.527 14 N -0.386 5.386 15 C 0.015 3.985 16 C -0.158 4.158 17 C -0.004 4.004 18 N -0.366 5.366 19 C 0.301 3.699 20 O -0.472 6.472 21 C -0.155 4.155 22 C -0.169 4.169 23 C -0.172 4.172 24 C -0.157 4.157 25 H 0.076 0.924 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.248 0.752 31 H 0.253 0.747 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.257 0.743 39 H 0.160 0.840 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.121 0.879 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 37.748 -6.454 -0.663 38.301 hybrid contribution -0.439 1.186 0.021 1.265 sum 37.309 -5.268 -0.642 37.684 Atomic orbital electron populations 1.70085 1.08664 1.28428 1.51995 1.26110 0.95697 1.03964 0.93627 0.85502 0.79694 0.77113 0.79308 1.19001 1.21370 1.15735 1.21272 0.91701 0.93357 1.51599 0.95476 1.19641 0.94254 0.92796 0.98173 1.20872 0.77333 0.98282 0.99650 1.45089 1.07193 1.07349 1.78958 1.16222 0.82721 0.83886 0.77767 1.90894 1.69257 1.32416 1.60098 1.44815 1.03110 1.10695 1.79949 1.21040 0.91067 0.84814 1.01629 1.21780 0.91307 0.97015 1.05672 1.21115 0.80020 0.97422 1.01809 1.45873 1.05845 1.10245 1.74669 1.21205 0.89886 0.84426 0.74354 1.90696 1.81164 1.23731 1.51614 1.22935 0.88540 1.01896 1.02130 1.22827 0.96926 0.96115 1.01049 1.22881 0.96586 0.98754 0.98961 1.22849 0.96819 1.02350 0.93646 0.92361 0.94318 0.94466 0.94225 0.94227 0.75200 0.74746 0.92792 0.92790 0.88256 0.88269 0.92514 0.92449 0.74339 0.84002 0.90448 0.91513 0.87869 0.91052 0.91215 0.88170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.36 13.96 21.45 0.30 -59.06 16 2 C 0.00 0.17 5.47 84.65 0.46 0.63 16 3 Si 0.96 41.72 27.47 68.60 1.88 43.60 16 4 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 5 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.23 -8.91 6.54 99.48 0.65 -8.25 16 7 C -0.54 -30.91 9.66 25.60 0.25 -30.66 16 8 H 0.03 1.75 7.99 -2.91 -0.02 1.72 16 9 C -0.01 -0.48 4.16 29.85 0.12 -0.35 16 10 C 0.16 6.73 5.61 86.38 0.48 7.21 16 11 N -0.73 -22.54 5.56 -478.52 -2.66 -25.20 16 12 C 0.69 22.18 8.57 179.05 1.53 23.72 16 13 O -0.64 -27.67 16.34 -4.00 -0.07 -27.73 16 14 N -0.73 -14.34 5.56 -478.54 -2.66 -17.00 16 15 C 0.14 2.46 5.67 86.38 0.49 2.95 16 16 C -0.12 -0.97 5.44 30.60 0.17 -0.81 16 17 C 0.12 1.56 5.67 86.38 0.49 2.05 16 18 N -0.71 -7.10 5.56 -463.06 -2.57 -9.67 16 19 C 0.51 8.13 7.35 87.66 0.64 8.77 16 20 O -0.59 -15.70 15.90 -3.02 -0.05 -15.75 16 21 C -0.13 -1.15 4.15 -11.01 -0.05 -1.20 16 22 C -0.13 -1.46 7.40 31.12 0.23 -1.23 16 23 C -0.13 -0.83 8.10 31.20 0.25 -0.58 16 24 C -0.12 -0.74 7.64 31.20 0.24 -0.50 16 25 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 26 H 0.04 1.59 7.20 -2.39 -0.02 1.57 16 27 H 0.04 1.50 7.57 -2.38 -0.02 1.49 16 28 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.41 9.34 8.49 -92.71 -0.79 8.55 16 31 H 0.42 4.72 8.49 -92.71 -0.79 3.93 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.42 1.06 8.47 -92.71 -0.79 0.27 16 39 H 0.14 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.07 1.13 7.43 -2.39 -0.02 1.11 16 42 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.07 0.67 8.09 -2.39 -0.02 0.65 16 45 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 Total: -1.00 -84.74 373.88 -1.92 -86.65 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -1.41 Total: 14.16 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 5.32 Total: 10.00 kcal Atomic # 7 Polarization: -103.34 SS G_CDS: -7.59 Total: -110.94 kcal Atomic # 8 Polarization: -43.37 SS G_CDS: -0.11 Total: -43.49 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 1.88 Total: 43.60 kcal Total: -84.74 -1.92 -86.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343864128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.294 kcal (2) G-P(sol) polarization free energy of solvation -84.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds