Wall clock time and date at job start Tue Mar 31 2020 05:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86801 * 119.99781 * 2 1 4 4 H 1.48500 * 109.46772 * 239.99863 * 3 2 1 5 5 H 1.48500 * 109.47162 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47091 * 119.99971 * 3 2 1 7 7 C 1.38948 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99649 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99835 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99663 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00342 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00183 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.47453 * 179.97438 * 12 10 9 14 14 C 1.34775 * 119.99959 * 180.02562 * 13 12 10 15 15 O 1.21584 * 120.00300 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99943 * 180.02562 * 14 13 12 17 17 C 1.46497 * 120.00234 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47480 * 179.97438 * 17 16 14 19 19 C 1.53002 * 109.47469 * 179.97438 * 18 17 16 20 20 C 1.52997 * 109.46817 * 64.99892 * 19 18 17 21 21 C 1.52999 * 109.47317 * 179.97438 * 20 19 18 22 22 C 1.53005 * 109.47159 * 300.00546 * 21 20 19 23 23 C 1.52997 * 109.47452 * 59.99536 * 22 21 20 24 24 C 1.53000 * 109.47233 * 184.99697 * 19 18 17 25 25 H 0.97002 * 119.99952 * 0.02562 * 1 2 3 26 26 H 0.96996 * 120.00496 * 0.02562 * 9 7 2 27 27 H 1.09009 * 109.47145 * 59.99923 * 12 10 9 28 28 H 1.08996 * 109.47059 * 300.00054 * 12 10 9 29 29 H 0.96999 * 119.99850 * 0.02562 * 13 12 10 30 30 H 0.96996 * 120.00407 * 359.97438 * 16 14 13 31 31 H 1.08997 * 109.47622 * 59.99100 * 17 16 14 32 32 H 1.09006 * 109.47216 * 299.99688 * 17 16 14 33 33 H 1.09008 * 109.47149 * 59.99636 * 18 17 16 34 34 H 1.08997 * 109.47163 * 299.99707 * 18 17 16 35 35 H 1.09002 * 109.47070 * 305.00072 * 19 18 17 36 36 H 1.08996 * 109.47853 * 300.00202 * 20 19 18 37 37 H 1.09002 * 109.47153 * 60.00231 * 20 19 18 38 38 H 1.09000 * 109.47486 * 180.02562 * 21 20 19 39 39 H 1.09002 * 109.46716 * 60.00091 * 21 20 19 40 40 H 1.09002 * 109.46935 * 299.99411 * 22 21 20 41 41 H 1.09001 * 109.46812 * 179.97438 * 22 21 20 42 42 H 1.08993 * 109.47194 * 179.97438 * 23 22 21 43 43 H 1.09002 * 109.46695 * 59.99734 * 23 22 21 44 44 H 1.08992 * 109.47399 * 300.00166 * 24 19 18 45 45 H 1.09004 * 109.46724 * 60.00652 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1017 1.6965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0010 13 7 2.1958 -5.9764 0.0017 14 6 1.7466 -7.2471 0.0009 15 8 0.5512 -7.4693 -0.0001 16 7 2.6224 -8.2715 0.0021 17 6 2.1341 -9.6527 0.0006 18 6 3.3241 -10.6144 0.0017 19 6 2.8141 -12.0569 0.0008 20 6 2.0709 -12.3342 -1.3075 21 6 1.5615 -13.7768 -1.3088 22 6 2.7466 -14.7363 -1.1822 23 6 3.4898 -14.4591 0.1261 24 6 3.9988 -13.0167 0.1276 25 1 -0.4850 0.8401 -0.0004 26 1 0.3534 -2.3906 -0.0002 27 1 0.6182 -4.9209 -0.8898 28 1 0.6162 -4.9205 0.8902 29 1 3.1495 -5.7992 0.0029 30 1 3.5760 -8.0943 0.0032 31 1 1.5301 -9.8236 -0.8905 32 1 1.5269 -9.8244 0.8894 33 1 3.9284 -10.4436 0.8927 34 1 3.9309 -10.4426 -0.8873 35 1 2.1363 -12.2032 0.8418 36 1 1.2269 -11.6504 -1.3980 37 1 2.7488 -12.1879 -2.1485 38 1 1.0324 -13.9745 -2.2411 39 1 0.8838 -13.9235 -0.4678 40 1 3.4243 -14.5896 -2.0232 41 1 2.3835 -15.7641 -1.1827 42 1 4.3337 -15.1429 0.2165 43 1 2.8120 -14.6057 0.9671 44 1 4.6766 -12.8705 -0.7133 45 1 4.5283 -12.8192 1.0597 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344359629.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:42 Heat of formation + Delta-G solvation = -106.978038 kcal Electronic energy + Delta-G solvation = -23153.876497 eV Core-core repulsion = 19590.606841 eV Total energy + Delta-G solvation = -3563.269655 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.88954 -39.10479 -38.16167 -35.45280 -34.36250 -33.61594 -32.66204 -31.35461 -31.10002 -28.67950 -27.02106 -24.55461 -23.63972 -22.72433 -21.16598 -20.63906 -20.03048 -19.55721 -18.32316 -17.89202 -16.32675 -15.83960 -15.61614 -15.54946 -15.04000 -14.64975 -14.57602 -14.32886 -14.22600 -14.19378 -13.90019 -13.55285 -13.42468 -12.89952 -12.44639 -12.29650 -12.15558 -12.00303 -11.80607 -11.61581 -11.52313 -11.43982 -11.14537 -11.08797 -10.77696 -10.49833 -10.43500 -10.30220 -10.26859 -9.97819 -9.61193 -9.10650 -8.60627 -8.55302 -8.08371 -6.49773 -3.91864 2.86901 3.14775 3.22402 3.26469 3.44775 3.77237 4.10036 4.28071 4.33030 4.38673 4.54998 4.70340 4.77847 4.92699 5.02086 5.05389 5.10426 5.15176 5.18855 5.19745 5.27182 5.34896 5.44744 5.59530 5.67232 5.72309 5.80649 5.81388 5.88337 5.88843 5.95288 5.97275 6.03545 6.07770 6.10722 6.17647 6.56264 6.79107 7.14163 7.47205 7.93881 8.28074 8.47090 8.83991 9.06117 9.41302 9.89363 10.67039 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.054858 B = 0.001924 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.282597 B =14550.820806 C =14869.552068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.429 3.571 11 O -0.599 6.599 12 C 0.129 3.871 13 N -0.725 5.725 14 C 0.704 3.296 15 O -0.599 6.599 16 N -0.751 5.751 17 C 0.139 3.861 18 C -0.128 4.128 19 C -0.082 4.082 20 C -0.120 4.120 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.114 4.114 25 H 0.275 0.725 26 H 0.396 0.604 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.406 0.594 30 H 0.396 0.604 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.023 -25.982 -0.822 26.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.122 0.878 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.383 5.383 14 C 0.403 3.597 15 O -0.478 6.478 16 N -0.407 5.407 17 C 0.015 3.985 18 C -0.166 4.166 19 C -0.101 4.101 20 C -0.157 4.157 21 C -0.158 4.158 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.151 4.151 25 H 0.084 0.916 26 H 0.230 0.770 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.244 0.756 30 H 0.229 0.771 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.555 -25.977 -0.823 26.387 hybrid contribution 0.649 1.058 0.001 1.242 sum 5.204 -24.919 -0.823 25.470 Atomic orbital electron populations 1.69609 1.05994 1.28604 1.49273 1.25325 0.95671 0.99916 0.96816 0.85866 0.78761 0.80170 0.79119 1.19809 1.20862 1.19803 1.19677 0.93427 0.82035 1.48370 0.87750 1.41779 1.09492 1.04436 1.62688 1.19776 0.88293 0.85029 0.85460 1.90487 1.13772 1.86887 1.57379 1.20775 0.91239 0.84862 1.03110 1.44777 1.11191 1.03369 1.78928 1.15870 0.85236 0.80585 0.78009 1.90899 1.14108 1.84318 1.58484 1.45073 1.09005 1.05310 1.81300 1.21213 0.96152 0.78893 1.02287 1.21861 0.97723 0.94143 1.02852 1.21079 0.97213 0.93282 0.98569 1.21683 1.00213 0.96502 0.97295 1.21539 0.97563 0.94913 1.01782 1.21547 0.97482 0.98929 0.97828 1.21521 0.99825 0.96502 0.97888 1.21566 0.97318 0.94360 1.01884 0.91550 0.77002 0.90052 0.90049 0.75639 0.77055 0.91560 0.91866 0.91181 0.91192 0.90816 0.91375 0.91905 0.92085 0.91985 0.92098 0.92298 0.92183 0.92023 0.91930 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.00 13.05 55.50 0.72 -23.28 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.62 29.55 -169.99 -5.02 15.59 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 7 C -0.31 -8.36 9.68 -14.93 -0.14 -8.50 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 9 N -0.55 -13.75 5.29 -10.96 -0.06 -13.80 16 10 C 0.43 9.96 7.85 -10.99 -0.09 9.87 16 11 O -0.60 -15.42 15.24 5.54 0.08 -15.33 16 12 C 0.13 2.45 6.15 -5.19 -0.03 2.42 16 13 N -0.73 -12.48 5.53 -66.41 -0.37 -12.85 16 14 C 0.70 11.75 8.57 -86.92 -0.74 11.01 16 15 O -0.60 -12.07 16.34 5.29 0.09 -11.98 16 16 N -0.75 -9.16 5.56 -65.23 -0.36 -9.53 16 17 C 0.14 1.44 5.43 -4.04 -0.02 1.42 16 18 C -0.13 -0.93 4.80 -26.73 -0.13 -1.06 16 19 C -0.08 -0.55 2.19 -90.62 -0.20 -0.75 16 20 C -0.12 -0.84 4.96 -26.73 -0.13 -0.97 16 21 C -0.12 -0.78 5.92 -26.73 -0.16 -0.93 16 22 C -0.12 -0.71 5.92 -26.73 -0.16 -0.87 16 23 C -0.12 -0.69 5.92 -26.76 -0.16 -0.85 16 24 C -0.11 -0.69 5.20 -26.76 -0.14 -0.83 16 25 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 26 H 0.40 9.54 7.90 -40.82 -0.32 9.22 16 27 H 0.08 1.50 8.14 -51.92 -0.42 1.07 16 28 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.41 6.75 7.45 -40.82 -0.30 6.44 16 30 H 0.40 3.86 8.49 -40.82 -0.35 3.51 16 31 H 0.07 0.75 6.57 -51.93 -0.34 0.40 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.53 6.57 -51.93 -0.34 0.19 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 364.54 15.07 5.49 5.49 Total: -1.00 -31.70 364.54 -9.13 -40.83 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -7.51 Total: 14.32 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: -2.20 Total: 10.54 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: -0.06 Total: -59.46 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: 0.17 Total: -27.31 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.70 -9.13 -40.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344359629.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.150 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds