Wall clock time and date at job start Tue Mar 31 2020 05:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86801 * 119.99781 * 2 1 4 4 H 1.48500 * 109.46772 * 239.99863 * 3 2 1 5 5 H 1.48500 * 109.47162 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47091 * 119.99971 * 3 2 1 7 7 C 1.38948 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99649 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99835 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99663 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00342 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00183 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.47453 * 179.97438 * 12 10 9 14 14 C 1.34775 * 119.99959 * 180.02562 * 13 12 10 15 15 O 1.21584 * 120.00300 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99943 * 180.02562 * 14 13 12 17 17 C 1.46497 * 120.00234 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47480 * 179.97438 * 17 16 14 19 19 C 1.53002 * 109.47469 * 179.97438 * 18 17 16 20 20 C 1.52997 * 109.46817 * 64.99892 * 19 18 17 21 21 C 1.52999 * 109.47317 * 179.97438 * 20 19 18 22 22 C 1.53005 * 109.47159 * 300.00546 * 21 20 19 23 23 C 1.52997 * 109.47452 * 59.99536 * 22 21 20 24 24 C 1.53000 * 109.47233 * 184.99697 * 19 18 17 25 25 H 0.97002 * 119.99952 * 0.02562 * 1 2 3 26 26 H 0.96996 * 120.00496 * 0.02562 * 9 7 2 27 27 H 1.09009 * 109.47145 * 59.99923 * 12 10 9 28 28 H 1.08996 * 109.47059 * 300.00054 * 12 10 9 29 29 H 0.96999 * 119.99850 * 0.02562 * 13 12 10 30 30 H 0.96996 * 120.00407 * 359.97438 * 16 14 13 31 31 H 1.08997 * 109.47622 * 59.99100 * 17 16 14 32 32 H 1.09006 * 109.47216 * 299.99688 * 17 16 14 33 33 H 1.09008 * 109.47149 * 59.99636 * 18 17 16 34 34 H 1.08997 * 109.47163 * 299.99707 * 18 17 16 35 35 H 1.09002 * 109.47070 * 305.00072 * 19 18 17 36 36 H 1.08996 * 109.47853 * 300.00202 * 20 19 18 37 37 H 1.09002 * 109.47153 * 60.00231 * 20 19 18 38 38 H 1.09000 * 109.47486 * 180.02562 * 21 20 19 39 39 H 1.09002 * 109.46716 * 60.00091 * 21 20 19 40 40 H 1.09002 * 109.46935 * 299.99411 * 22 21 20 41 41 H 1.09001 * 109.46812 * 179.97438 * 22 21 20 42 42 H 1.08993 * 109.47194 * 179.97438 * 23 22 21 43 43 H 1.09002 * 109.46695 * 59.99734 * 23 22 21 44 44 H 1.08992 * 109.47399 * 300.00166 * 24 19 18 45 45 H 1.09004 * 109.46724 * 60.00652 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1017 1.6965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0010 13 7 2.1958 -5.9764 0.0017 14 6 1.7466 -7.2471 0.0009 15 8 0.5512 -7.4693 -0.0001 16 7 2.6224 -8.2715 0.0021 17 6 2.1341 -9.6527 0.0006 18 6 3.3241 -10.6144 0.0017 19 6 2.8141 -12.0569 0.0008 20 6 2.0709 -12.3342 -1.3075 21 6 1.5615 -13.7768 -1.3088 22 6 2.7466 -14.7363 -1.1822 23 6 3.4898 -14.4591 0.1261 24 6 3.9988 -13.0167 0.1276 25 1 -0.4850 0.8401 -0.0004 26 1 0.3534 -2.3906 -0.0002 27 1 0.6182 -4.9209 -0.8898 28 1 0.6162 -4.9205 0.8902 29 1 3.1495 -5.7992 0.0029 30 1 3.5760 -8.0943 0.0032 31 1 1.5301 -9.8236 -0.8905 32 1 1.5269 -9.8244 0.8894 33 1 3.9284 -10.4436 0.8927 34 1 3.9309 -10.4426 -0.8873 35 1 2.1363 -12.2032 0.8418 36 1 1.2269 -11.6504 -1.3980 37 1 2.7488 -12.1879 -2.1485 38 1 1.0324 -13.9745 -2.2411 39 1 0.8838 -13.9235 -0.4678 40 1 3.4243 -14.5896 -2.0232 41 1 2.3835 -15.7641 -1.1827 42 1 4.3337 -15.1429 0.2165 43 1 2.8120 -14.6057 0.9671 44 1 4.6766 -12.8705 -0.7133 45 1 4.5283 -12.8192 1.0597 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344359629.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:41 Heat of formation + Delta-G solvation = -128.783570 kcal Electronic energy + Delta-G solvation = -23154.822056 eV Core-core repulsion = 19590.606841 eV Total energy + Delta-G solvation = -3564.215214 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.21437 -40.09346 -39.61466 -36.48291 -36.14550 -35.25719 -33.51381 -33.30318 -31.60109 -29.80591 -28.30625 -26.32840 -24.44276 -23.30208 -22.02615 -21.67482 -21.35318 -20.57812 -20.10038 -19.45321 -17.51400 -17.36541 -17.01490 -16.54426 -16.28855 -16.13959 -15.83261 -15.43111 -15.34195 -15.12738 -14.83268 -14.81299 -14.49381 -13.94534 -13.68169 -13.53094 -13.46733 -12.95128 -12.90102 -12.86207 -12.54112 -12.46269 -12.16665 -12.13088 -11.94383 -11.70506 -11.55560 -11.48350 -11.27564 -10.89657 -10.80041 -10.55087 -10.41053 -10.09639 -9.78437 -8.50076 -6.00513 1.38842 1.43026 1.53487 1.64213 1.90526 2.12478 2.29526 3.05801 3.17008 3.34517 3.74340 3.80234 3.91605 4.10119 4.21097 4.22599 4.43150 4.43603 4.47069 4.47936 4.52439 4.61456 4.69925 4.71651 4.75474 4.84691 5.03231 5.11022 5.12432 5.23914 5.30947 5.31805 5.35993 5.37189 5.39251 5.44385 5.51544 5.55357 5.65710 5.92097 5.98191 6.48795 7.03934 7.04923 7.43462 7.54528 7.95032 8.66537 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.054858 B = 0.001924 C = 0.001883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.282597 B =14550.820806 C =14869.552068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.339 4.339 8 H 0.087 0.913 9 N -0.559 5.559 10 C 0.434 3.566 11 O -0.624 6.624 12 C 0.142 3.858 13 N -0.724 5.724 14 C 0.702 3.298 15 O -0.635 6.635 16 N -0.733 5.733 17 C 0.138 3.862 18 C -0.116 4.116 19 C -0.079 4.079 20 C -0.119 4.119 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.111 4.111 25 H 0.280 0.720 26 H 0.399 0.601 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.410 0.590 30 H 0.411 0.589 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.964 -26.631 -0.774 27.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.105 0.895 9 N -0.194 5.194 10 C 0.221 3.779 11 O -0.512 6.512 12 C 0.013 3.987 13 N -0.382 5.382 14 C 0.401 3.599 15 O -0.517 6.517 16 N -0.389 5.389 17 C 0.014 3.986 18 C -0.154 4.154 19 C -0.098 4.098 20 C -0.157 4.157 21 C -0.159 4.159 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.149 4.149 25 H 0.089 0.911 26 H 0.233 0.767 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.248 0.752 30 H 0.247 0.753 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.522 -26.666 -0.775 27.243 hybrid contribution 0.351 1.168 -0.020 1.220 sum 5.873 -25.498 -0.795 26.178 Atomic orbital electron populations 1.69679 1.07014 1.29695 1.49186 1.26144 0.96552 1.02714 0.95769 0.84911 0.77692 0.76187 0.79087 1.19495 1.19652 1.19481 1.19712 0.93000 0.83540 1.50525 0.89505 1.41829 1.09598 1.04584 1.63431 1.20406 0.88115 0.85884 0.83524 1.90464 1.15142 1.87558 1.58043 1.20576 0.91037 0.83130 1.03975 1.44690 1.10998 1.03264 1.79269 1.16005 0.85200 0.80874 0.77790 1.90876 1.15830 1.84774 1.60177 1.45011 1.09300 1.05028 1.79577 1.21345 0.97473 0.78324 1.01439 1.21791 0.96411 0.93441 1.03763 1.21050 0.97510 0.93106 0.98180 1.21670 0.99841 0.96634 0.97547 1.21541 0.97864 0.94740 1.01707 1.21542 0.97179 0.98990 0.97971 1.21527 1.00035 0.96503 0.97679 1.21543 0.96862 0.94192 1.02253 0.91070 0.76697 0.89141 0.89132 0.75183 0.75338 0.92420 0.92807 0.90129 0.90349 0.91237 0.92579 0.91820 0.92058 0.92264 0.92036 0.91802 0.91450 0.92200 0.91701 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.81 13.05 21.66 0.28 -48.53 16 2 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 3 Si 1.00 41.75 29.55 68.60 2.03 43.78 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 6 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.34 -18.69 9.68 84.04 0.81 -17.88 16 8 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 9 N -0.56 -28.25 5.29 -306.98 -1.62 -29.87 16 10 C 0.43 20.16 7.85 87.66 0.69 20.85 16 11 O -0.62 -32.24 15.24 -3.08 -0.05 -32.28 16 12 C 0.14 5.31 6.15 85.63 0.53 5.83 16 13 N -0.72 -24.31 5.53 -482.30 -2.67 -26.98 16 14 C 0.70 22.83 8.57 179.06 1.53 24.36 16 15 O -0.63 -25.30 16.34 -3.98 -0.07 -25.36 16 16 N -0.73 -16.90 5.56 -478.55 -2.66 -19.56 16 17 C 0.14 2.73 5.43 86.38 0.47 3.20 16 18 C -0.12 -1.48 4.80 30.59 0.15 -1.33 16 19 C -0.08 -0.96 2.19 -10.79 -0.02 -0.98 16 20 C -0.12 -1.58 4.96 30.59 0.15 -1.42 16 21 C -0.12 -1.46 5.92 30.60 0.18 -1.28 16 22 C -0.12 -1.24 5.92 30.60 0.18 -1.06 16 23 C -0.12 -1.18 5.92 30.58 0.18 -1.00 16 24 C -0.11 -1.12 5.20 30.58 0.16 -0.97 16 25 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 26 H 0.40 19.41 7.90 -92.71 -0.73 18.68 16 27 H 0.09 3.27 8.14 -2.38 -0.02 3.25 16 28 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 29 H 0.41 13.24 7.45 -92.71 -0.69 12.54 16 30 H 0.41 7.19 8.49 -92.71 -0.79 6.40 16 31 H 0.06 1.27 6.57 -2.39 -0.02 1.26 16 32 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 36 H 0.06 0.87 6.57 -2.39 -0.02 0.85 16 37 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 39 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -66.89 364.54 -0.48 -67.37 By element: Atomic # 1 Polarization: 44.42 SS G_CDS: -1.20 Total: 43.22 kcal Atomic # 6 Polarization: 22.74 SS G_CDS: 5.48 Total: 28.22 kcal Atomic # 7 Polarization: -118.28 SS G_CDS: -6.67 Total: -124.95 kcal Atomic # 8 Polarization: -57.54 SS G_CDS: -0.11 Total: -57.65 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -66.89 -0.48 -67.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344359629.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.409 kcal (2) G-P(sol) polarization free energy of solvation -66.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds