Wall clock time and date at job start Tue Mar 31 2020 04:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 109.47002 * 2 1 4 4 C 1.50707 * 109.47260 * 240.00033 * 2 1 3 5 5 O 1.21279 * 119.99736 * 264.97111 * 4 2 1 6 6 N 1.34775 * 119.99854 * 84.97157 * 4 2 1 7 7 C 1.46502 * 119.99771 * 184.94323 * 6 4 2 8 8 C 1.52998 * 109.46910 * 184.74743 * 7 6 4 9 9 C 1.50704 * 115.54900 * 300.57131 * 8 7 6 10 10 H 1.07999 * 120.00044 * 93.47322 * 9 8 7 11 11 C 1.37876 * 119.99970 * 273.18827 * 9 8 7 12 12 N 1.31511 * 119.99932 * 355.49413 * 11 9 8 13 13 Si 1.86797 * 120.00060 * 175.48342 * 11 9 8 14 14 H 1.48501 * 109.47078 * 60.00434 * 13 11 9 15 15 H 1.48496 * 109.47349 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47360 * 300.00886 * 13 11 9 17 17 C 1.52998 * 117.50261 * 86.24283 * 8 7 6 18 18 C 1.53001 * 117.49875 * 154.90427 * 8 7 6 19 19 C 1.52995 * 109.47118 * 120.00297 * 2 1 3 20 20 C 1.53182 * 109.54318 * 302.79107 * 19 2 1 21 21 C 1.53096 * 109.16125 * 183.24180 * 20 19 2 22 22 O 1.42905 * 109.48657 * 57.47656 * 21 20 19 23 23 C 1.42910 * 114.09699 * 298.89104 * 22 21 20 24 24 C 1.53090 * 109.41522 * 61.15564 * 23 22 21 25 25 H 1.09008 * 109.47037 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47393 * 299.99831 * 1 2 3 27 27 H 1.09003 * 109.47110 * 60.00424 * 1 2 3 28 28 H 0.96697 * 113.99797 * 180.02562 * 3 2 1 29 29 H 0.96999 * 120.00101 * 4.93880 * 6 4 2 30 30 H 1.08995 * 109.47518 * 64.74324 * 7 6 4 31 31 H 1.08996 * 109.46951 * 304.74217 * 7 6 4 32 32 H 0.97005 * 120.00182 * 184.99666 * 12 11 9 33 33 H 1.08997 * 117.49978 * 215.00534 * 17 8 7 34 34 H 1.09004 * 117.49515 * 0.02562 * 17 8 7 35 35 H 1.08999 * 117.50032 * 359.97438 * 18 8 7 36 36 H 1.09006 * 117.49924 * 144.97555 * 18 8 7 37 37 H 1.08992 * 109.54770 * 62.96801 * 19 2 1 38 38 H 1.09004 * 109.52081 * 303.06387 * 20 19 2 39 39 H 1.09004 * 109.52013 * 63.24407 * 20 19 2 40 40 H 1.09001 * 109.40818 * 297.49567 * 21 20 19 41 41 H 1.09004 * 109.49728 * 177.50991 * 21 20 19 42 42 H 1.09004 * 109.47706 * 301.17399 * 23 22 21 43 43 H 1.08995 * 109.49067 * 181.14525 * 23 22 21 44 44 H 1.09000 * 109.52043 * 182.48687 * 24 23 22 45 45 H 1.08997 * 109.57133 * 62.33025 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.3213 -1.8870 -1.1759 6 7 2.1605 -0.0382 -2.3916 7 6 2.5447 -0.7513 -3.6123 8 6 2.7338 0.2526 -4.7513 9 6 1.5231 1.0820 -5.0943 10 1 1.3883 2.0534 -4.6420 11 6 0.5907 0.6032 -5.9900 12 7 0.8010 -0.5364 -6.6119 13 14 -0.9714 1.5729 -6.3199 14 1 -0.6186 2.9137 -6.8519 15 1 -1.8030 0.8485 -7.3144 16 1 -1.7347 1.7272 -5.0555 17 6 4.1060 0.9152 -4.8885 18 6 3.6642 -0.1472 -5.8982 19 6 2.0400 -0.7213 1.2492 20 6 1.4737 -0.0423 2.5000 21 6 2.0529 -0.7192 3.7451 22 8 3.4796 -0.6481 3.7062 23 6 4.0663 -1.3086 2.5828 24 6 3.5697 -0.6539 1.2911 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 2.9702 1.4236 -0.0004 29 1 1.9984 0.9178 -2.4190 30 1 1.7622 -1.4613 -3.8799 31 1 3.4784 -1.2871 -3.4415 32 1 0.1815 -0.8378 -7.2948 33 1 4.1331 1.9510 -5.2269 34 1 4.8742 0.6355 -4.1676 35 1 4.1420 -1.1253 -5.8411 36 1 3.4005 0.1894 -6.9009 37 1 1.7214 -1.7633 1.2242 38 1 1.7496 1.0123 2.4986 39 1 0.3876 -0.1354 2.5050 40 1 1.7415 -1.7635 3.7676 41 1 1.6879 -0.2118 4.6381 42 1 3.7812 -2.3606 2.5901 43 1 5.1517 -1.2257 2.6383 44 1 3.9813 -1.1843 0.4324 45 1 3.8894 0.3877 1.2635 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352645743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:18 Heat of formation + Delta-G solvation = -124.172281 kcal Electronic energy + Delta-G solvation = -25595.437172 eV Core-core repulsion = 21999.129167 eV Total energy + Delta-G solvation = -3596.308005 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.177 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.58898 -38.80736 -37.10542 -36.46587 -33.83970 -33.01029 -31.98956 -31.40279 -30.44234 -26.64365 -25.63645 -25.24275 -23.69496 -22.49261 -21.16924 -20.23788 -19.64750 -19.32189 -17.78507 -16.77381 -16.12611 -16.08208 -15.61576 -15.22863 -15.16217 -14.76529 -14.60102 -14.12499 -14.09807 -13.58292 -13.29724 -13.08460 -12.72513 -12.50593 -12.37507 -12.09498 -11.78520 -11.74638 -11.59800 -11.52039 -11.32314 -11.00898 -10.98591 -10.87675 -10.64537 -10.57168 -10.25719 -10.23156 -9.66733 -9.60014 -9.08452 -9.04451 -8.52431 -8.31027 -8.11550 -6.10677 -4.20967 2.99584 3.24655 3.30608 3.32382 3.62656 3.75693 4.18321 4.32425 4.45497 4.63174 4.72383 4.87857 5.05189 5.13544 5.16955 5.21086 5.28701 5.36220 5.42060 5.50827 5.55133 5.63541 5.77298 5.80776 5.84837 5.90754 5.99385 6.00562 6.19961 6.28107 6.29399 6.43342 6.49812 6.67698 6.81211 7.05372 7.08553 7.19360 7.32914 7.45152 7.53143 7.77780 8.24307 8.30357 8.76055 8.81077 9.46556 10.96145 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.022276 B = 0.004102 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.647775 B = 6824.940899 C = 7496.644698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.126 3.874 3 O -0.547 6.547 4 C 0.479 3.521 5 O -0.555 6.555 6 N -0.690 5.690 7 C 0.161 3.839 8 C 0.023 3.977 9 C -0.500 4.500 10 H 0.060 0.940 11 C 0.074 3.926 12 N -0.875 5.875 13 Si 0.890 3.110 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.211 4.211 18 C -0.140 4.140 19 C -0.099 4.099 20 C -0.148 4.148 21 C 0.061 3.939 22 O -0.386 6.386 23 C 0.066 3.934 24 C -0.158 4.158 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.377 0.623 29 H 0.408 0.592 30 H 0.065 0.935 31 H 0.040 0.960 32 H 0.262 0.738 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.048 0.952 41 H 0.092 0.908 42 H 0.051 0.949 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.460 0.636 16.219 16.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.082 3.918 3 O -0.353 6.353 4 C 0.263 3.737 5 O -0.435 6.435 6 N -0.339 5.339 7 C 0.038 3.962 8 C 0.022 3.978 9 C -0.538 4.538 10 H 0.078 0.922 11 C -0.130 4.130 12 N -0.511 5.511 13 Si 0.718 3.282 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.201 1.201 17 C -0.248 4.248 18 C -0.179 4.179 19 C -0.118 4.118 20 C -0.186 4.186 21 C -0.016 4.016 22 O -0.304 6.304 23 C -0.011 4.011 24 C -0.196 4.196 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.226 0.774 29 H 0.243 0.757 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.110 0.890 42 H 0.070 0.930 43 H 0.111 0.889 44 H 0.102 0.898 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.003 -0.144 16.252 16.376 hybrid contribution -0.552 0.586 -0.775 1.118 sum 1.450 0.442 15.477 15.551 Atomic orbital electron populations 1.21778 0.90780 1.03144 1.03965 1.21409 0.96375 0.82221 0.91760 1.86565 1.27050 1.24883 1.96834 1.21171 0.78983 0.87861 0.85657 1.90649 1.50924 1.16276 1.85611 1.46008 1.66824 1.13076 1.07984 1.21011 0.98146 0.94434 0.82627 1.19029 0.89089 0.96161 0.93487 1.20302 1.04088 1.02487 1.26911 0.92201 1.24982 0.97830 0.94608 0.95585 1.69982 1.37068 1.20127 1.23923 0.86693 0.83382 0.80007 0.78138 1.20222 1.21278 1.20099 1.23039 0.99960 0.97770 1.04038 1.22448 1.03366 0.96061 0.95988 1.21600 0.95564 1.01004 0.93661 1.22255 1.00888 1.01408 0.94049 1.22585 0.81092 0.99774 0.98121 1.87910 1.19811 1.77152 1.45569 1.22512 0.98106 0.95453 0.85008 1.22292 0.95684 1.02026 0.99574 0.90670 0.90706 0.90800 0.77423 0.75670 0.91656 0.94152 0.92815 0.90362 0.91835 0.91906 0.89407 0.89179 0.90187 0.90503 0.93340 0.88985 0.93037 0.88896 0.89804 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.40 37.16 0.31 -1.51 16 2 C 0.13 1.74 0.77 -91.77 -0.07 1.67 16 3 O -0.55 -7.07 11.57 -35.23 -0.41 -7.48 16 4 C 0.48 8.47 5.96 -10.98 -0.07 8.41 16 5 O -0.55 -11.36 15.16 5.56 0.08 -11.28 16 6 N -0.69 -13.14 5.38 -60.29 -0.32 -13.46 16 7 C 0.16 3.56 5.55 -4.04 -0.02 3.54 16 8 C 0.02 0.53 1.58 -155.66 -0.25 0.29 16 9 C -0.50 -12.69 8.33 -34.44 -0.29 -12.98 16 10 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 11 C 0.07 1.94 5.42 -17.82 -0.10 1.84 16 12 N -0.88 -23.94 12.52 55.43 0.69 -23.24 16 13 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 15 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 C -0.21 -4.36 9.95 -26.69 -0.27 -4.63 16 18 C -0.14 -3.20 9.07 -26.69 -0.24 -3.44 16 19 C -0.10 -1.20 1.35 -90.44 -0.12 -1.32 16 20 C -0.15 -1.50 4.81 -26.59 -0.13 -1.63 16 21 C 0.06 0.59 6.84 37.21 0.25 0.84 16 22 O -0.39 -4.48 10.77 -35.23 -0.38 -4.86 16 23 C 0.07 0.70 6.84 37.20 0.25 0.96 16 24 C -0.16 -1.84 4.84 -26.59 -0.13 -1.96 16 25 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 26 H 0.07 0.82 6.46 -51.93 -0.34 0.48 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.38 4.06 7.17 45.56 0.33 4.39 16 29 H 0.41 7.53 7.50 -40.82 -0.31 7.23 16 30 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 31 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 32 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 33 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.09 2.15 8.09 -51.93 -0.42 1.73 16 37 H 0.09 1.20 7.76 -51.93 -0.40 0.80 16 38 H 0.08 0.86 7.69 -51.93 -0.40 0.46 16 39 H 0.08 0.69 6.58 -51.93 -0.34 0.35 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.08 1.13 6.82 -51.93 -0.35 0.77 16 45 H 0.07 0.74 6.59 -51.93 -0.34 0.40 16 LS Contribution 356.25 15.07 5.37 5.37 Total: -1.00 -28.93 356.25 -7.61 -36.54 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -6.77 Total: 12.98 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -0.85 Total: -9.92 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.37 Total: -36.70 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.70 Total: -23.61 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.93 -7.61 -36.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352645743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.632 kcal (2) G-P(sol) polarization free energy of solvation -28.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds