Wall clock time and date at job start Tue Mar 31 2020 04:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 109.47002 * 2 1 4 4 C 1.50707 * 109.47260 * 240.00033 * 2 1 3 5 5 O 1.21279 * 119.99736 * 264.97111 * 4 2 1 6 6 N 1.34775 * 119.99854 * 84.97157 * 4 2 1 7 7 C 1.46502 * 119.99771 * 184.94323 * 6 4 2 8 8 C 1.52998 * 109.46910 * 184.74743 * 7 6 4 9 9 C 1.50704 * 115.54900 * 300.57131 * 8 7 6 10 10 H 1.07999 * 120.00044 * 93.47322 * 9 8 7 11 11 C 1.37876 * 119.99970 * 273.18827 * 9 8 7 12 12 N 1.31511 * 119.99932 * 355.49413 * 11 9 8 13 13 Si 1.86797 * 120.00060 * 175.48342 * 11 9 8 14 14 H 1.48501 * 109.47078 * 60.00434 * 13 11 9 15 15 H 1.48496 * 109.47349 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47360 * 300.00886 * 13 11 9 17 17 C 1.52998 * 117.50261 * 86.24283 * 8 7 6 18 18 C 1.53001 * 117.49875 * 154.90427 * 8 7 6 19 19 C 1.52995 * 109.47118 * 120.00297 * 2 1 3 20 20 C 1.53182 * 109.54318 * 302.79107 * 19 2 1 21 21 C 1.53096 * 109.16125 * 183.24180 * 20 19 2 22 22 O 1.42905 * 109.48657 * 57.47656 * 21 20 19 23 23 C 1.42910 * 114.09699 * 298.89104 * 22 21 20 24 24 C 1.53090 * 109.41522 * 61.15564 * 23 22 21 25 25 H 1.09008 * 109.47037 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47393 * 299.99831 * 1 2 3 27 27 H 1.09003 * 109.47110 * 60.00424 * 1 2 3 28 28 H 0.96697 * 113.99797 * 180.02562 * 3 2 1 29 29 H 0.96999 * 120.00101 * 4.93880 * 6 4 2 30 30 H 1.08995 * 109.47518 * 64.74324 * 7 6 4 31 31 H 1.08996 * 109.46951 * 304.74217 * 7 6 4 32 32 H 0.97005 * 120.00182 * 184.99666 * 12 11 9 33 33 H 1.08997 * 117.49978 * 215.00534 * 17 8 7 34 34 H 1.09004 * 117.49515 * 0.02562 * 17 8 7 35 35 H 1.08999 * 117.50032 * 359.97438 * 18 8 7 36 36 H 1.09006 * 117.49924 * 144.97555 * 18 8 7 37 37 H 1.08992 * 109.54770 * 62.96801 * 19 2 1 38 38 H 1.09004 * 109.52081 * 303.06387 * 20 19 2 39 39 H 1.09004 * 109.52013 * 63.24407 * 20 19 2 40 40 H 1.09001 * 109.40818 * 297.49567 * 21 20 19 41 41 H 1.09004 * 109.49728 * 177.50991 * 21 20 19 42 42 H 1.09004 * 109.47706 * 301.17399 * 23 22 21 43 43 H 1.08995 * 109.49067 * 181.14525 * 23 22 21 44 44 H 1.09000 * 109.52043 * 182.48687 * 24 23 22 45 45 H 1.08997 * 109.57133 * 62.33025 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.3213 -1.8870 -1.1759 6 7 2.1605 -0.0382 -2.3916 7 6 2.5447 -0.7513 -3.6123 8 6 2.7338 0.2526 -4.7513 9 6 1.5231 1.0820 -5.0943 10 1 1.3883 2.0534 -4.6420 11 6 0.5907 0.6032 -5.9900 12 7 0.8010 -0.5364 -6.6119 13 14 -0.9714 1.5729 -6.3199 14 1 -0.6186 2.9137 -6.8519 15 1 -1.8030 0.8485 -7.3144 16 1 -1.7347 1.7272 -5.0555 17 6 4.1060 0.9152 -4.8885 18 6 3.6642 -0.1472 -5.8982 19 6 2.0400 -0.7213 1.2492 20 6 1.4737 -0.0423 2.5000 21 6 2.0529 -0.7192 3.7451 22 8 3.4796 -0.6481 3.7062 23 6 4.0663 -1.3086 2.5828 24 6 3.5697 -0.6539 1.2911 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 2.9702 1.4236 -0.0004 29 1 1.9984 0.9178 -2.4190 30 1 1.7622 -1.4613 -3.8799 31 1 3.4784 -1.2871 -3.4415 32 1 0.1815 -0.8378 -7.2948 33 1 4.1331 1.9510 -5.2269 34 1 4.8742 0.6355 -4.1676 35 1 4.1420 -1.1253 -5.8411 36 1 3.4005 0.1894 -6.9009 37 1 1.7214 -1.7633 1.2242 38 1 1.7496 1.0123 2.4986 39 1 0.3876 -0.1354 2.5050 40 1 1.7415 -1.7635 3.7676 41 1 1.6879 -0.2118 4.6381 42 1 3.7812 -2.3606 2.5901 43 1 5.1517 -1.2257 2.6383 44 1 3.9813 -1.1843 0.4324 45 1 3.8894 0.3877 1.2635 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352645743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:18 Heat of formation + Delta-G solvation = -144.296794 kcal Electronic energy + Delta-G solvation = -25596.309836 eV Core-core repulsion = 21999.129167 eV Total energy + Delta-G solvation = -3597.180669 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.177 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.76267 -39.94671 -38.61441 -37.85920 -35.16001 -34.28153 -33.95219 -32.28281 -31.43740 -28.33472 -27.28277 -26.48299 -24.59479 -23.63125 -22.91350 -21.43185 -21.24034 -20.63076 -19.12749 -18.16376 -17.55030 -16.98697 -16.76582 -16.67997 -16.54133 -16.34597 -15.73430 -15.62911 -15.29350 -14.88077 -14.51297 -14.41237 -14.21452 -13.62977 -13.52750 -13.46072 -13.36836 -13.07671 -12.94592 -12.80769 -12.73989 -12.45545 -12.39831 -12.19265 -12.03533 -11.87877 -11.56365 -11.41919 -11.11033 -10.96313 -10.65100 -10.46023 -10.38506 -9.99363 -9.84821 -8.10249 -6.24825 1.42641 1.44358 1.50458 1.56289 2.23935 2.42051 2.96518 3.12618 3.17207 3.42924 3.48286 3.67086 3.74286 4.00104 4.06025 4.19987 4.22380 4.32461 4.38016 4.51416 4.56685 4.60820 4.64022 4.69794 4.72355 4.79489 4.82001 4.83904 4.92999 4.97337 5.01233 5.03866 5.10279 5.22575 5.26746 5.39529 5.51483 5.57942 5.69236 5.76398 6.26114 6.35291 6.43947 6.77012 6.83391 7.28573 7.45235 8.96123 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.022276 B = 0.004102 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.647775 B = 6824.940899 C = 7496.644698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.138 3.862 3 O -0.546 6.546 4 C 0.478 3.522 5 O -0.584 6.584 6 N -0.690 5.690 7 C 0.177 3.823 8 C 0.002 3.998 9 C -0.504 4.504 10 H 0.062 0.938 11 C 0.027 3.973 12 N -0.907 5.907 13 Si 0.947 3.053 14 H -0.270 1.270 15 H -0.291 1.291 16 H -0.271 1.271 17 C -0.179 4.179 18 C -0.151 4.151 19 C -0.095 4.095 20 C -0.141 4.141 21 C 0.057 3.943 22 O -0.398 6.398 23 C 0.067 3.933 24 C -0.156 4.156 25 H 0.074 0.926 26 H 0.102 0.898 27 H 0.057 0.943 28 H 0.387 0.613 29 H 0.412 0.588 30 H 0.025 0.975 31 H 0.041 0.959 32 H 0.259 0.741 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.053 0.947 41 H 0.112 0.888 42 H 0.050 0.950 43 H 0.106 0.894 44 H 0.061 0.939 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.362 2.098 18.235 18.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.094 3.906 3 O -0.353 6.353 4 C 0.264 3.736 5 O -0.465 6.465 6 N -0.339 5.339 7 C 0.053 3.947 8 C 0.001 3.999 9 C -0.542 4.542 10 H 0.080 0.920 11 C -0.174 4.174 12 N -0.544 5.544 13 Si 0.773 3.227 14 H -0.195 1.195 15 H -0.217 1.217 16 H -0.196 1.196 17 C -0.216 4.216 18 C -0.190 4.190 19 C -0.115 4.115 20 C -0.178 4.178 21 C -0.019 4.019 22 O -0.317 6.317 23 C -0.010 4.010 24 C -0.193 4.193 25 H 0.093 0.907 26 H 0.121 0.879 27 H 0.076 0.924 28 H 0.238 0.762 29 H 0.248 0.752 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.072 0.928 41 H 0.130 0.870 42 H 0.068 0.932 43 H 0.124 0.876 44 H 0.080 0.920 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.913 1.346 18.289 18.438 hybrid contribution -0.483 0.117 -1.389 1.475 sum 1.430 1.464 16.900 17.023 Atomic orbital electron populations 1.21836 0.90079 1.03379 1.04561 1.21313 0.96749 0.82364 0.90163 1.86560 1.28152 1.23984 1.96652 1.21994 0.77707 0.87607 0.86282 1.90632 1.51918 1.17829 1.86164 1.45920 1.67296 1.13115 1.07565 1.20585 0.96703 0.93696 0.83730 1.19076 0.89760 0.97007 0.94036 1.20593 1.04740 1.02582 1.26282 0.92029 1.25670 1.00473 0.95478 0.95792 1.70105 1.38005 1.21638 1.24667 0.85783 0.80122 0.78870 0.77890 1.19523 1.21674 1.19618 1.23018 0.98556 0.97326 1.02680 1.22359 1.04240 0.97250 0.95107 1.21566 0.95981 1.00159 0.93747 1.22223 1.01680 1.00972 0.92955 1.22756 0.80165 1.00401 0.98626 1.87899 1.20942 1.77253 1.45647 1.22535 0.98899 0.95198 0.84334 1.22252 0.95313 1.02473 0.99277 0.90698 0.87936 0.92356 0.76237 0.75197 0.95631 0.94098 0.93208 0.89834 0.89411 0.91304 0.91689 0.90610 0.90265 0.89063 0.92837 0.86955 0.93181 0.87610 0.92027 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 8.40 71.98 0.60 -2.86 16 2 C 0.14 3.61 0.77 -11.54 -0.01 3.60 16 3 O -0.55 -12.91 11.57 -148.98 -1.72 -14.63 16 4 C 0.48 16.80 5.96 87.66 0.52 17.32 16 5 O -0.58 -24.22 15.16 -3.03 -0.05 -24.27 16 6 N -0.69 -26.15 5.38 -463.06 -2.49 -28.64 16 7 C 0.18 7.96 5.55 86.38 0.48 8.44 16 8 C 0.00 0.09 1.58 -52.93 -0.08 0.00 16 9 C -0.50 -25.53 8.33 25.60 0.21 -25.32 16 10 H 0.06 3.03 7.82 -2.91 -0.02 3.01 16 11 C 0.03 1.40 5.42 84.65 0.46 1.86 16 12 N -0.91 -50.69 12.52 21.45 0.27 -50.42 16 13 Si 0.95 41.85 29.54 68.60 2.03 43.88 16 14 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 15 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 16 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 17 C -0.18 -7.12 9.95 30.62 0.30 -6.82 16 18 C -0.15 -6.92 9.07 30.62 0.28 -6.64 16 19 C -0.10 -2.15 1.35 -10.67 -0.01 -2.17 16 20 C -0.14 -2.45 4.81 30.69 0.15 -2.30 16 21 C 0.06 0.94 6.84 72.01 0.49 1.43 16 22 O -0.40 -8.32 10.77 -148.98 -1.60 -9.93 16 23 C 0.07 1.32 6.84 72.01 0.49 1.81 16 24 C -0.16 -3.40 4.84 30.68 0.15 -3.26 16 25 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 26 H 0.10 1.94 6.46 -2.39 -0.02 1.92 16 27 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.39 7.46 7.17 -74.06 -0.53 6.93 16 29 H 0.41 14.90 7.50 -92.71 -0.70 14.21 16 30 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.04 1.80 8.07 -2.39 -0.02 1.78 16 32 H 0.26 14.02 8.32 -92.70 -0.77 13.25 16 33 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 34 H 0.09 3.08 8.14 -2.38 -0.02 3.06 16 35 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 36 H 0.06 3.25 8.09 -2.38 -0.02 3.23 16 37 H 0.08 1.96 7.76 -2.39 -0.02 1.94 16 38 H 0.08 1.44 7.69 -2.38 -0.02 1.42 16 39 H 0.09 1.34 6.58 -2.39 -0.02 1.32 16 40 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 41 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 43 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.06 1.63 6.82 -2.39 -0.02 1.62 16 45 H 0.08 1.56 6.59 -2.39 -0.02 1.54 16 Total: -1.00 -62.10 356.25 0.24 -61.87 By element: Atomic # 1 Polarization: 37.27 SS G_CDS: -0.23 Total: 37.03 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: 4.04 Total: -14.89 kcal Atomic # 7 Polarization: -76.84 SS G_CDS: -2.22 Total: -79.06 kcal Atomic # 8 Polarization: -45.46 SS G_CDS: -3.37 Total: -48.83 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -62.10 0.24 -61.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352645743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.432 kcal (2) G-P(sol) polarization free energy of solvation -62.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds