Wall clock time and date at job start Tue Mar 31 2020 05:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 119.99642 * 2 1 4 4 H 1.48503 * 109.47183 * 239.99345 * 3 2 1 5 5 H 1.48495 * 109.47666 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47265 * 119.99885 * 3 2 1 7 7 C 1.37874 * 119.99725 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99396 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00334 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47105 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47063 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99761 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00138 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00123 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47048 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.47081 * 180.02562 * 15 14 13 17 17 N 1.46898 * 109.46709 * 185.62858 * 16 15 14 18 18 C 1.47897 * 111.00382 * 65.20218 * 17 16 15 19 19 C 1.53993 * 107.22799 * 214.25409 * 18 17 16 20 20 C 1.54596 * 105.13656 * 1.12141 * 19 18 17 21 21 C 1.48809 * 111.18740 * 307.85621 * 17 16 15 22 22 H 1.09001 * 110.65729 * 41.01239 * 21 17 16 23 23 C 1.50696 * 110.70489 * 278.02671 * 21 17 16 24 24 N 1.34774 * 120.00414 * 184.56939 * 23 21 17 25 25 O 1.21283 * 119.99599 * 4.57182 * 23 21 17 26 26 H 0.97000 * 120.00194 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47216 * 59.99953 * 9 7 2 28 28 H 1.09004 * 109.47100 * 299.99641 * 9 7 2 29 29 H 1.08999 * 109.46979 * 59.99982 * 10 9 7 30 30 H 1.08996 * 109.47227 * 299.99698 * 10 9 7 31 31 H 0.97008 * 119.99674 * 359.97438 * 13 11 10 32 32 H 1.08999 * 109.46961 * 60.00377 * 14 13 11 33 33 H 1.08996 * 109.47145 * 300.00155 * 14 13 11 34 34 H 1.08997 * 109.46938 * 59.99788 * 15 14 13 35 35 H 1.09004 * 109.46991 * 300.00231 * 15 14 13 36 36 H 1.09001 * 109.47028 * 65.62876 * 16 15 14 37 37 H 1.08998 * 109.46613 * 305.62959 * 16 15 14 38 38 H 1.09000 * 109.91973 * 94.79676 * 18 17 16 39 39 H 1.09007 * 109.91473 * 333.70207 * 18 17 16 40 40 H 1.08997 * 110.31433 * 120.03968 * 19 18 17 41 41 H 1.09006 * 110.30678 * 242.11129 * 19 18 17 42 42 H 1.08997 * 110.72454 * 140.32100 * 20 19 18 43 43 H 1.09003 * 110.72441 * 263.59959 * 20 19 18 44 44 H 0.97002 * 119.99543 * 0.02562 * 24 23 21 45 45 H 0.96997 * 120.00180 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9672 0.0012 12 8 0.2790 -4.9672 0.0021 13 7 2.1656 -6.1344 0.0008 14 6 1.4332 -7.4031 0.0019 15 6 2.4274 -8.5660 0.0018 16 6 1.6624 -9.8911 0.0024 17 7 2.6114 -11.0042 0.1381 18 6 3.2872 -10.9673 1.4532 19 6 4.7231 -11.4824 1.2427 20 6 4.8261 -11.7838 -0.2701 21 6 3.6974 -10.9116 -0.8750 22 1 4.0287 -9.8796 -0.9903 23 6 3.2419 -11.4731 -2.1972 24 7 4.1095 -11.5671 -3.2242 25 8 2.0945 -11.8403 -2.3370 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 2.8720 -3.6043 0.8905 30 1 2.8719 -3.6044 -0.8894 31 1 3.1357 -6.1343 -0.0003 32 1 0.8056 -7.4611 -0.8874 33 1 0.8075 -7.4605 0.8926 34 1 3.0547 -8.5078 0.8913 35 1 3.0535 -8.5087 -0.8887 36 1 1.1132 -9.9939 -0.9335 37 1 0.9627 -9.9061 0.8380 38 1 2.7616 -11.6105 2.1589 39 1 3.3111 -9.9446 1.8298 40 1 5.4451 -10.7166 1.5258 41 1 4.8882 -12.3902 1.8230 42 1 5.7982 -11.4805 -0.6585 43 1 4.6439 -12.8405 -0.4661 44 1 5.0272 -11.2736 -3.1122 45 1 3.8163 -11.9288 -4.0752 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360168111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:14 Heat of formation + Delta-G solvation = -84.583082 kcal Electronic energy + Delta-G solvation = -23701.092410 eV Core-core repulsion = 20138.793873 eV Total energy + Delta-G solvation = -3562.298537 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.66979 -39.14694 -38.36046 -35.50797 -34.08952 -33.43970 -33.09220 -31.09296 -29.80850 -29.78365 -26.14976 -24.86169 -23.49457 -22.22185 -21.46145 -21.32681 -20.05993 -19.43984 -17.68563 -17.36923 -16.81551 -16.62469 -15.99992 -15.59313 -15.40302 -15.14562 -14.86909 -14.65066 -14.40680 -14.28321 -13.76669 -13.40634 -13.12309 -12.77274 -12.65930 -12.25369 -12.15776 -12.05078 -11.86421 -11.65448 -11.56193 -11.23695 -11.15869 -10.91410 -10.76091 -10.61994 -10.16264 -10.01868 -9.94930 -9.66117 -9.20465 -9.05550 -8.77893 -8.68207 -8.31425 -5.95516 -4.00207 2.33465 2.94830 3.27437 3.34117 3.38582 3.40199 3.53118 3.72144 4.08127 4.13997 4.41888 4.47488 4.53899 4.63931 4.74933 4.82760 4.90942 4.98421 5.11415 5.25264 5.29264 5.38246 5.39085 5.50668 5.53886 5.55194 5.68193 5.80641 5.88065 6.02372 6.22815 6.24188 6.33912 6.46960 6.60960 6.72718 6.89779 6.98241 7.74349 7.87128 7.89005 7.96795 8.08011 8.39123 8.79624 9.08374 9.63155 11.15429 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.026035 B = 0.002254 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.201174 B =12418.918020 C =12472.868178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.508 3.492 12 O -0.534 6.534 13 N -0.746 5.746 14 C 0.124 3.876 15 C -0.171 4.171 16 C 0.047 3.953 17 N -0.488 5.488 18 C 0.027 3.973 19 C -0.130 4.130 20 C -0.113 4.113 21 C 0.032 3.968 22 H 0.090 0.910 23 C 0.527 3.473 24 N -0.859 5.859 25 O -0.521 6.521 26 H 0.262 0.738 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.395 0.605 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.399 0.601 45 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.032 -26.825 -0.966 30.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.073 0.927 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.296 3.704 12 O -0.409 6.409 13 N -0.400 5.400 14 C -0.001 4.001 15 C -0.210 4.210 16 C -0.081 4.081 17 N -0.211 5.211 18 C -0.101 4.101 19 C -0.168 4.168 20 C -0.151 4.151 21 C -0.079 4.079 22 H 0.108 0.892 23 C 0.310 3.690 24 N -0.424 5.424 25 O -0.394 6.394 26 H 0.071 0.929 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.228 0.772 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.227 0.773 45 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 12.828 -27.375 -0.910 30.245 hybrid contribution 1.770 1.709 -0.242 2.472 sum 14.598 -25.666 -1.152 29.550 Atomic orbital electron populations 1.69990 1.06059 1.26712 1.50057 1.25032 0.94834 0.99230 0.95315 0.86644 0.79535 0.83177 0.78513 1.20269 1.21270 1.20257 1.21184 0.92863 0.91049 1.51551 0.92687 1.18895 0.93184 0.89361 0.98630 1.21861 1.00703 0.92027 1.02368 1.21574 0.88686 0.85680 0.74456 1.90676 1.14488 1.87654 1.48066 1.46218 1.09883 1.05713 1.78221 1.21118 0.94317 0.82233 1.02397 1.22523 0.99819 0.96175 1.02491 1.22320 0.95174 0.86157 1.04478 1.64751 1.12851 1.42340 1.01175 1.22993 0.94004 1.01077 0.92003 1.22389 0.96538 1.01954 0.95889 1.22460 0.96699 1.00377 0.95581 1.22922 0.93157 1.00207 0.91643 0.89244 1.20294 0.85529 0.77923 0.85258 1.43854 1.14685 1.68484 1.15330 1.90762 1.18506 1.47212 1.82962 0.92872 0.95836 0.95823 0.90321 0.90330 0.77165 0.91708 0.91697 0.90901 0.91317 0.89201 0.89713 0.89789 0.92570 0.90975 0.90512 0.90247 0.90246 0.77263 0.76687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.67 13.29 55.43 0.74 -26.94 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.53 -15.09 9.11 -34.44 -0.31 -15.41 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.89 16 10 C -0.13 -2.65 5.64 -27.88 -0.16 -2.80 16 11 C 0.51 9.92 7.83 -10.99 -0.09 9.84 16 12 O -0.53 -12.93 15.98 5.55 0.09 -12.84 16 13 N -0.75 -10.39 5.56 -60.30 -0.33 -10.73 16 14 C 0.12 1.54 5.67 -4.04 -0.02 1.52 16 15 C -0.17 -1.48 4.47 -26.73 -0.12 -1.60 16 16 C 0.05 0.45 5.22 -3.82 -0.02 0.43 16 17 N -0.49 -4.34 4.85 -223.77 -1.09 -5.43 16 18 C 0.03 0.18 6.45 -2.76 -0.02 0.16 16 19 C -0.13 -0.63 6.93 -25.37 -0.18 -0.80 16 20 C -0.11 -0.54 6.44 -24.87 -0.16 -0.70 16 21 C 0.03 0.23 2.49 -66.79 -0.17 0.06 16 22 H 0.09 0.54 5.51 -51.93 -0.29 0.26 16 23 C 0.53 4.72 7.40 -10.99 -0.08 4.64 16 24 N -0.86 -4.20 8.82 31.22 0.28 -3.93 16 25 O -0.52 -7.19 16.50 5.56 0.09 -7.09 16 26 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 27 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 31 H 0.40 4.19 8.47 -40.82 -0.35 3.84 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.56 6.12 -51.93 -0.32 0.24 16 35 H 0.07 0.55 6.28 -51.93 -0.33 0.23 16 36 H 0.09 1.03 7.41 -51.93 -0.39 0.65 16 37 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.37 5.80 -51.93 -0.30 0.07 16 40 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.08 0.45 8.05 -51.93 -0.42 0.03 16 44 H 0.40 0.73 8.82 -40.82 -0.36 0.37 16 45 H 0.40 1.75 8.93 -40.82 -0.36 1.39 16 LS Contribution 364.14 15.07 5.49 5.49 Total: -1.00 -38.15 364.14 -8.59 -46.74 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -7.29 Total: 0.20 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -1.54 Total: -2.19 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -0.41 Total: -47.02 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: 0.18 Total: -19.93 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -38.15 -8.59 -46.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360168111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.842 kcal (2) G-P(sol) polarization free energy of solvation -38.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds