Wall clock time and date at job start Tue Mar 31 2020 04:19:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.34141 * 118.70153 * 2 1
4 4 O 1.21220 * 119.36734 * 0.56583 * 3 2 1
5 5 C 1.50595 * 121.27464 * 180.54725 * 3 2 1
6 6 C 1.53250 * 109.16040 * 330.90090 * 5 3 2
7 7 C 1.53239 * 108.56586 * 55.62170 * 6 5 3
8 8 H 1.08995 * 109.52794 * 64.34898 * 7 6 5
9 9 N 1.46497 * 109.52379 * 184.47736 * 7 6 5
10 10 C 1.34776 * 120.00427 * 204.99686 * 9 7 6
11 11 O 1.21590 * 119.99449 * 359.97438 * 10 9 7
12 12 N 1.34770 * 120.00072 * 180.02562 * 10 9 7
13 13 C 1.46507 * 119.99912 * 180.02562 * 12 10 9
14 14 C 1.52992 * 109.47485 * 179.97438 * 13 12 10
15 15 C 1.52997 * 109.47482 * 179.97438 * 14 13 12
16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 13
17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14
18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14
19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15
20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15
21 21 H 1.48506 * 109.47294 * 60.00559 * 20 18 16
22 22 H 1.48503 * 109.46954 * 180.02562 * 20 18 16
23 23 H 1.48503 * 109.47431 * 300.00157 * 20 18 16
24 24 C 1.34144 * 118.70536 * 180.02562 * 2 1 3
25 25 O 1.21225 * 119.36169 * 359.45607 * 24 2 1
26 26 H 1.09000 * 109.47041 * 359.97438 * 1 2 3
27 27 H 1.09000 * 109.46842 * 120.00001 * 1 2 3
28 28 H 1.09001 * 109.46784 * 239.99831 * 1 2 3
29 29 H 1.08997 * 109.51918 * 211.00186 * 5 3 2
30 30 H 1.08993 * 109.52644 * 90.80961 * 5 3 2
31 31 H 1.08998 * 109.62088 * 295.89304 * 6 5 3
32 32 H 1.09004 * 109.61629 * 175.34145 * 6 5 3
33 33 H 0.97005 * 119.99508 * 24.99832 * 9 7 6
34 34 H 0.96992 * 120.00518 * 359.97438 * 12 10 9
35 35 H 1.09002 * 109.47280 * 59.99618 * 13 12 10
36 36 H 1.09001 * 109.46702 * 299.99811 * 13 12 10
37 37 H 1.09002 * 109.47103 * 59.99596 * 14 13 12
38 38 H 1.08998 * 109.46862 * 300.00408 * 14 13 12
39 39 H 1.09002 * 109.47153 * 59.99783 * 15 14 13
40 40 H 1.09001 * 109.46832 * 299.99974 * 15 14 13
41 41 H 0.97002 * 119.99768 * 179.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1092 1.1766 0.0000
4 8 1.4682 2.2053 0.0104
5 6 3.6136 1.2442 -0.0123
6 6 4.1787 0.0000 0.6813
7 6 3.6137 -1.2442 -0.0122
8 1 3.9692 -1.2804 -1.0419
9 7 4.0556 -2.4453 0.7007
10 6 4.1328 -3.6240 0.0519
11 8 3.8353 -3.6906 -1.1252
12 7 4.5388 -4.7290 0.7080
13 6 4.6233 -6.0103 0.0025
14 6 5.1070 -7.0935 0.9685
15 6 5.1947 -8.4317 0.2319
16 6 5.6718 -9.4985 1.1834
17 1 5.8902 -9.2474 2.2108
18 6 5.8284 -10.7955 0.7424
19 7 5.5619 -11.1014 -0.5085
20 14 6.4191 -12.1180 1.9220
21 1 5.4629 -12.2364 3.0521
22 1 6.5042 -13.4168 1.2070
23 1 7.7602 -11.7523 2.4444
24 6 2.1093 -1.1766 -0.0005
25 8 1.4682 -2.2054 0.0090
26 1 -0.3633 1.0277 0.0005
27 1 -0.3633 -0.5138 -0.8900
28 1 -0.3633 -0.5139 0.8900
29 1 3.9423 2.1378 0.5182
30 1 3.9683 1.2798 -1.0423
31 1 3.8836 0.0001 1.7306
32 1 5.2660 0.0001 0.6041
33 1 4.2925 -2.3921 1.6399
34 1 4.7758 -4.6760 1.6470
35 1 5.3258 -5.9231 -0.8264
36 1 3.6393 -6.2789 -0.3820
37 1 4.4049 -7.1809 1.7976
38 1 6.0910 -6.8246 1.3526
39 1 5.8966 -8.3446 -0.5974
40 1 4.2104 -8.7003 -0.1518
41 1 5.6724 -12.0138 -0.8188
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000425438304.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:19:48
Heat of formation + Delta-G solvation = -105.358867 kcal
Electronic energy + Delta-G solvation = -23576.323397 eV
Core-core repulsion = 19877.290860 eV
Total energy + Delta-G solvation = -3699.032537 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 297.152 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-42.09084 -39.99068 -38.96711 -36.50665 -35.59023 -35.13856 -33.50225 -33.02760
-31.09526 -28.34015 -27.95975 -26.39241 -23.78846 -23.59476 -22.85689 -20.96900
-20.45900 -19.22256 -18.10028 -17.84254 -17.60160 -17.14297 -16.42746 -15.96342
-15.58013 -15.16351 -14.90126 -14.80115 -14.64778 -14.37301 -13.97639 -13.85076
-13.57636 -13.15729 -12.95473 -12.75961 -12.47054 -12.26604 -11.82473 -11.75652
-11.73579 -10.89697 -10.79214 -10.71862 -10.63562 -10.61852 -10.18898 -10.06843
-9.85033 -9.45132 -9.40840 -9.13144 -8.68660 -8.36230 -6.00927 -4.04109
1.15869 2.05360 2.27654 2.73409 3.23473 3.32312 3.37162 3.38924
3.52879 3.90574 4.06750 4.09789 4.37988 4.45682 4.48687 4.81540
4.92411 5.03353 5.04589 5.07197 5.22315 5.28401 5.34692 5.42674
5.69463 5.82184 6.03556 6.19855 6.50345 6.59525 6.63098 6.72158
6.97254 7.02372 7.04598 7.41687 7.64483 7.77680 7.97899 8.04223
8.38629 8.66987 9.02374 9.59858 11.10338
Molecular weight = 297.15amu
Principal moments of inertia in cm(-1)
A = 0.042652 B = 0.002273 C = 0.002231
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 656.313472 B =12313.554180 C =12548.430662
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.060 3.940
2 N -0.569 5.569
3 C 0.521 3.479
4 O -0.506 6.506
5 C -0.137 4.137
6 C -0.131 4.131
7 C 0.152 3.848
8 H 0.132 0.868
9 N -0.734 5.734
10 C 0.707 3.293
11 O -0.581 6.581
12 N -0.737 5.737
13 C 0.135 3.865
14 C -0.120 4.120
15 C 0.024 3.976
16 C -0.523 4.523
17 H 0.055 0.945
18 C 0.057 3.943
19 N -0.894 5.894
20 Si 0.894 3.106
21 H -0.277 1.277
22 H -0.287 1.287
23 H -0.277 1.277
24 C 0.497 3.503
25 O -0.465 6.465
26 H 0.097 0.903
27 H 0.076 0.924
28 H 0.074 0.926
29 H 0.121 0.879
30 H 0.117 0.883
31 H 0.085 0.915
32 H 0.106 0.894
33 H 0.401 0.599
34 H 0.394 0.606
35 H 0.063 0.937
36 H 0.063 0.937
37 H 0.054 0.946
38 H 0.054 0.946
39 H 0.019 0.981
40 H 0.019 0.981
41 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.012 27.766 4.028 28.218
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 N -0.314 5.314
3 C 0.311 3.689
4 O -0.379 6.379
5 C -0.177 4.177
6 C -0.169 4.169
7 C 0.042 3.958
8 H 0.150 0.850
9 N -0.391 5.391
10 C 0.407 3.593
11 O -0.458 6.458
12 N -0.391 5.391
13 C 0.012 3.988
14 C -0.158 4.158
15 C -0.014 4.014
16 C -0.561 4.561
17 H 0.073 0.927
18 C -0.145 4.145
19 N -0.532 5.532
20 Si 0.721 3.279
21 H -0.203 1.203
22 H -0.213 1.213
23 H -0.203 1.203
24 C 0.283 3.717
25 O -0.333 6.333
26 H 0.116 0.884
27 H 0.094 0.906
28 H 0.093 0.907
29 H 0.139 0.861
30 H 0.135 0.865
31 H 0.103 0.897
32 H 0.124 0.876
33 H 0.236 0.764
34 H 0.227 0.773
35 H 0.082 0.918
36 H 0.082 0.918
37 H 0.072 0.928
38 H 0.073 0.927
39 H 0.038 0.962
40 H 0.038 0.962
41 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -3.958 27.436 2.790 27.860
hybrid contribution 0.355 -0.828 1.470 1.724
sum -3.603 26.608 4.260 27.187
Atomic orbital electron populations
1.21952 0.77588 1.04794 1.03774 1.46611 1.10169 1.07684 1.66888
1.21017 0.91478 0.82556 0.73854 1.90737 1.68659 1.33075 1.45459
1.21897 0.89686 1.00839 1.05297 1.22043 1.03405 0.90895 1.00577
1.20731 0.88481 0.85701 1.00909 0.85032 1.44761 1.73346 1.06886
1.14120 1.15892 0.78066 0.80121 0.85181 1.90933 1.55534 1.84697
1.14636 1.45325 1.71513 1.08219 1.14039 1.21545 1.01643 0.80032
0.95582 1.21889 0.99808 0.96076 0.98033 1.19024 0.97613 0.89094
0.95632 1.21163 1.44989 0.93381 0.96589 0.92714 1.25031 0.95562
0.98734 0.95151 1.69955 1.48773 1.19494 1.15027 0.86640 0.79274
0.80961 0.80990 1.20258 1.21282 1.20262 1.21730 0.91999 0.82618
0.75309 1.90802 1.67947 1.32810 1.41789 0.88421 0.90565 0.90687
0.86095 0.86515 0.89673 0.87567 0.76447 0.77268 0.91844 0.91828
0.92757 0.92745 0.96236 0.96224 0.92863
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.52 9.81 59.85 0.59 1.11 16
2 N -0.57 -5.16 2.93 -123.16 -0.36 -5.52 16
3 C 0.52 4.03 7.48 -11.32 -0.08 3.94 16
4 O -0.51 -5.40 16.19 5.61 0.09 -5.31 16
5 C -0.14 -0.47 6.07 -27.80 -0.17 -0.64 16
6 C -0.13 -0.43 5.56 -26.48 -0.15 -0.57 16
7 C 0.15 1.22 2.70 -69.01 -0.19 1.03 16
8 H 0.13 1.14 7.57 -51.93 -0.39 0.75 16
9 N -0.73 -6.97 4.89 -59.75 -0.29 -7.26 16
10 C 0.71 10.41 8.00 -86.92 -0.70 9.71 16
11 O -0.58 -11.16 15.92 5.29 0.08 -11.07 16
12 N -0.74 -10.43 5.56 -65.22 -0.36 -10.80 16
13 C 0.13 2.40 5.67 -4.04 -0.02 2.38 16
14 C -0.12 -2.33 5.27 -26.74 -0.14 -2.47 16
15 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16
16 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16
17 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16
18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16
19 N -0.89 -26.87 13.29 55.43 0.74 -26.14 16
20 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16
21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16
23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
24 C 0.50 5.37 7.29 -11.32 -0.08 5.28 16
25 O -0.47 -7.18 15.95 5.60 0.09 -7.09 16
26 H 0.10 0.78 6.73 -51.93 -0.35 0.43 16
27 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16
28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16
29 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16
30 H 0.12 0.24 8.14 -51.93 -0.42 -0.19 16
31 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16
32 H 0.11 0.15 8.14 -51.93 -0.42 -0.27 16
33 H 0.40 2.46 8.62 -40.82 -0.35 2.11 16
34 H 0.39 4.30 8.49 -40.82 -0.35 3.96 16
35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16
36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16
37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16
38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16
39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16
40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16
LS Contribution 348.14 15.07 5.25 5.25
Total: -1.00 -38.02 348.14 -7.33 -45.35
By element:
Atomic # 1 Polarization: 5.32 SS G_CDS: -6.06 Total: -0.73 kcal
Atomic # 6 Polarization: 8.36 SS G_CDS: -1.49 Total: 6.87 kcal
Atomic # 7 Polarization: -49.43 SS G_CDS: -0.28 Total: -49.71 kcal
Atomic # 8 Polarization: -23.73 SS G_CDS: 0.26 Total: -23.47 kcal
Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal
Total LS contribution 5.25 Total: 5.25 kcal
Total: -38.02 -7.33 -45.35 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000425438304.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -60.007 kcal
(2) G-P(sol) polarization free energy of solvation -38.017 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.024 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.351 kcal
(6) G-S(sol) free energy of system = (1) + (5) -105.359 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds