Wall clock time and date at job start Tue Mar 31 2020 04:19:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.34141 * 118.70153 * 2 1
4 4 O 1.21220 * 119.36734 * 0.56583 * 3 2 1
5 5 C 1.50595 * 121.27464 * 180.54725 * 3 2 1
6 6 C 1.53250 * 109.16040 * 330.90090 * 5 3 2
7 7 C 1.53239 * 108.56586 * 55.62170 * 6 5 3
8 8 H 1.08995 * 109.52794 * 64.34898 * 7 6 5
9 9 N 1.46497 * 109.52379 * 184.47736 * 7 6 5
10 10 C 1.34776 * 120.00427 * 204.99686 * 9 7 6
11 11 O 1.21590 * 119.99449 * 359.97438 * 10 9 7
12 12 N 1.34770 * 120.00072 * 180.02562 * 10 9 7
13 13 C 1.46507 * 119.99912 * 180.02562 * 12 10 9
14 14 C 1.52992 * 109.47485 * 179.97438 * 13 12 10
15 15 C 1.52997 * 109.47482 * 179.97438 * 14 13 12
16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 13
17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14
18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14
19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15
20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15
21 21 H 1.48506 * 109.47294 * 60.00559 * 20 18 16
22 22 H 1.48503 * 109.46954 * 180.02562 * 20 18 16
23 23 H 1.48503 * 109.47431 * 300.00157 * 20 18 16
24 24 C 1.34144 * 118.70536 * 180.02562 * 2 1 3
25 25 O 1.21225 * 119.36169 * 359.45607 * 24 2 1
26 26 H 1.09000 * 109.47041 * 359.97438 * 1 2 3
27 27 H 1.09000 * 109.46842 * 120.00001 * 1 2 3
28 28 H 1.09001 * 109.46784 * 239.99831 * 1 2 3
29 29 H 1.08997 * 109.51918 * 211.00186 * 5 3 2
30 30 H 1.08993 * 109.52644 * 90.80961 * 5 3 2
31 31 H 1.08998 * 109.62088 * 295.89304 * 6 5 3
32 32 H 1.09004 * 109.61629 * 175.34145 * 6 5 3
33 33 H 0.97005 * 119.99508 * 24.99832 * 9 7 6
34 34 H 0.96992 * 120.00518 * 359.97438 * 12 10 9
35 35 H 1.09002 * 109.47280 * 59.99618 * 13 12 10
36 36 H 1.09001 * 109.46702 * 299.99811 * 13 12 10
37 37 H 1.09002 * 109.47103 * 59.99596 * 14 13 12
38 38 H 1.08998 * 109.46862 * 300.00408 * 14 13 12
39 39 H 1.09002 * 109.47153 * 59.99783 * 15 14 13
40 40 H 1.09001 * 109.46832 * 299.99974 * 15 14 13
41 41 H 0.97002 * 119.99768 * 179.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1092 1.1766 0.0000
4 8 1.4682 2.2053 0.0104
5 6 3.6136 1.2442 -0.0123
6 6 4.1787 0.0000 0.6813
7 6 3.6137 -1.2442 -0.0122
8 1 3.9692 -1.2804 -1.0419
9 7 4.0556 -2.4453 0.7007
10 6 4.1328 -3.6240 0.0519
11 8 3.8353 -3.6906 -1.1252
12 7 4.5388 -4.7290 0.7080
13 6 4.6233 -6.0103 0.0025
14 6 5.1070 -7.0935 0.9685
15 6 5.1947 -8.4317 0.2319
16 6 5.6718 -9.4985 1.1834
17 1 5.8902 -9.2474 2.2108
18 6 5.8284 -10.7955 0.7424
19 7 5.5619 -11.1014 -0.5085
20 14 6.4191 -12.1180 1.9220
21 1 5.4629 -12.2364 3.0521
22 1 6.5042 -13.4168 1.2070
23 1 7.7602 -11.7523 2.4444
24 6 2.1093 -1.1766 -0.0005
25 8 1.4682 -2.2054 0.0090
26 1 -0.3633 1.0277 0.0005
27 1 -0.3633 -0.5138 -0.8900
28 1 -0.3633 -0.5139 0.8900
29 1 3.9423 2.1378 0.5182
30 1 3.9683 1.2798 -1.0423
31 1 3.8836 0.0001 1.7306
32 1 5.2660 0.0001 0.6041
33 1 4.2925 -2.3921 1.6399
34 1 4.7758 -4.6760 1.6470
35 1 5.3258 -5.9231 -0.8264
36 1 3.6393 -6.2789 -0.3820
37 1 4.4049 -7.1809 1.7976
38 1 6.0910 -6.8246 1.3526
39 1 5.8966 -8.3446 -0.5974
40 1 4.2104 -8.7003 -0.1518
41 1 5.6724 -12.0138 -0.8188
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000425438304.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:19:46
Heat of formation + Delta-G solvation = -135.508020 kcal
Electronic energy + Delta-G solvation = -23577.630763 eV
Core-core repulsion = 19877.290860 eV
Total energy + Delta-G solvation = -3700.339903 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 297.152 amu
Computer time = 1.66 seconds
Orbital eigenvalues (eV)
-42.82029 -41.03545 -39.87472 -37.39435 -36.74222 -36.19468 -35.18800 -34.04859
-32.75916 -29.29632 -28.69977 -27.93657 -25.05976 -24.30525 -23.93572 -22.29733
-21.96984 -19.99458 -19.09745 -18.58648 -18.51479 -18.29309 -17.88669 -16.99398
-16.75611 -16.48413 -16.01877 -15.72053 -15.69022 -15.39585 -15.24714 -15.13648
-14.24878 -14.17376 -13.79371 -13.73490 -13.62180 -13.46792 -13.36418 -12.94371
-12.70535 -12.53591 -12.38652 -12.12585 -11.70773 -11.65364 -11.62719 -11.31755
-11.26462 -11.15182 -10.87238 -10.53408 -10.44264 -9.88130 -8.17920 -6.29532
0.42617 1.30329 1.42631 1.45881 1.52897 1.54082 1.88114 2.17211
2.43195 2.88163 3.15719 3.22186 3.48791 3.58943 3.91152 4.10473
4.18962 4.24038 4.25660 4.31318 4.36362 4.42444 4.58178 4.69081
4.84129 4.94173 4.97764 4.99051 5.05206 5.18862 5.24585 5.47792
5.55670 5.73023 5.85836 5.88232 5.94905 6.23957 6.36819 6.67155
6.87774 7.07214 7.39934 7.56223 8.94087
Molecular weight = 297.15amu
Principal moments of inertia in cm(-1)
A = 0.042652 B = 0.002273 C = 0.002231
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 656.313472 B =12313.554180 C =12548.430662
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.057 3.943
2 N -0.571 5.571
3 C 0.519 3.481
4 O -0.537 6.537
5 C -0.128 4.128
6 C -0.115 4.115
7 C 0.149 3.851
8 H 0.128 0.872
9 N -0.713 5.713
10 C 0.704 3.296
11 O -0.631 6.631
12 N -0.727 5.727
13 C 0.150 3.850
14 C -0.099 4.099
15 C 0.023 3.977
16 C -0.541 4.541
17 H 0.068 0.932
18 C -0.005 4.005
19 N -0.936 5.936
20 Si 0.968 3.032
21 H -0.266 1.266
22 H -0.287 1.287
23 H -0.263 1.263
24 C 0.499 3.501
25 O -0.522 6.522
26 H 0.103 0.897
27 H 0.068 0.932
28 H 0.074 0.926
29 H 0.148 0.852
30 H 0.137 0.863
31 H 0.100 0.900
32 H 0.139 0.861
33 H 0.421 0.579
34 H 0.413 0.587
35 H 0.051 0.949
36 H 0.039 0.961
37 H 0.065 0.935
38 H 0.073 0.927
39 H -0.006 1.006
40 H -0.011 1.011
41 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.077 29.532 6.420 30.241
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.084 4.084
2 N -0.314 5.314
3 C 0.312 3.688
4 O -0.412 6.412
5 C -0.167 4.167
6 C -0.153 4.153
7 C 0.039 3.961
8 H 0.145 0.855
9 N -0.370 5.370
10 C 0.404 3.596
11 O -0.511 6.511
12 N -0.383 5.383
13 C 0.026 3.974
14 C -0.137 4.137
15 C -0.015 4.015
16 C -0.579 4.579
17 H 0.086 0.914
18 C -0.202 4.202
19 N -0.576 5.576
20 Si 0.792 3.208
21 H -0.191 1.191
22 H -0.213 1.213
23 H -0.188 1.188
24 C 0.288 3.712
25 O -0.394 6.394
26 H 0.121 0.879
27 H 0.087 0.913
28 H 0.093 0.907
29 H 0.166 0.834
30 H 0.155 0.845
31 H 0.119 0.881
32 H 0.157 0.843
33 H 0.259 0.741
34 H 0.250 0.750
35 H 0.070 0.930
36 H 0.057 0.943
37 H 0.084 0.916
38 H 0.092 0.908
39 H 0.012 0.988
40 H 0.007 0.993
41 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -1.997 29.285 5.261 29.821
hybrid contribution -0.319 -1.290 0.680 1.493
sum -2.316 27.994 5.940 28.711
Atomic orbital electron populations
1.21947 0.78095 1.04950 1.03439 1.46731 1.10273 1.08029 1.66410
1.21949 0.93301 0.81282 0.72294 1.90730 1.69796 1.33826 1.46827
1.22049 0.85710 1.01908 1.07073 1.22084 1.04952 0.87614 1.00613
1.21052 0.86548 0.86948 1.01516 0.85483 1.44529 1.71861 1.05675
1.14983 1.16093 0.77580 0.81242 0.84703 1.90904 1.57515 1.85630
1.17050 1.44951 1.71603 1.06956 1.14763 1.21066 0.99825 0.81436
0.95122 1.21579 1.01251 0.93264 0.97641 1.18946 0.95019 0.92264
0.95257 1.21658 1.44571 0.94180 0.97454 0.91404 1.26046 0.95694
1.01584 0.96920 1.70112 1.50132 1.20102 1.17268 0.85457 0.79308
0.77407 0.78593 1.19121 1.21284 1.18817 1.22321 0.93155 0.82098
0.73650 1.90784 1.69267 1.34673 1.44719 0.87862 0.91344 0.90739
0.83414 0.84493 0.88148 0.84269 0.74093 0.75026 0.93021 0.94284
0.91644 0.90842 0.98770 0.99296 0.92841
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 1.03 9.81 127.77 1.25 2.28 16
2 N -0.57 -10.02 2.93 -781.12 -2.29 -12.31 16
3 C 0.52 7.06 7.48 87.72 0.66 7.72 16
4 O -0.54 -10.76 16.19 -2.84 -0.05 -10.80 16
5 C -0.13 -0.37 6.07 29.90 0.18 -0.19 16
6 C -0.11 -0.24 5.56 30.76 0.17 -0.07 16
7 C 0.15 2.08 2.70 44.29 0.12 2.19 16
8 H 0.13 1.99 7.57 -2.39 -0.02 1.98 16
9 N -0.71 -12.01 4.89 -461.20 -2.25 -14.26 16
10 C 0.70 20.18 8.00 179.06 1.43 21.61 16
11 O -0.63 -24.63 15.92 -4.00 -0.06 -24.69 16
12 N -0.73 -19.76 5.56 -478.54 -2.66 -22.43 16
13 C 0.15 5.40 5.67 86.38 0.49 5.89 16
14 C -0.10 -3.81 5.27 30.59 0.16 -3.65 16
15 C 0.02 1.20 4.97 29.85 0.15 1.35 16
16 C -0.54 -30.14 9.11 25.60 0.23 -29.91 16
17 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16
18 C 0.00 -0.28 5.46 84.66 0.46 0.18 16
19 N -0.94 -57.53 13.29 21.45 0.28 -57.25 16
20 Si 0.97 43.74 29.54 68.60 2.03 45.77 16
21 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16
22 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16
23 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16
24 C 0.50 10.55 7.29 87.72 0.64 11.19 16
25 O -0.52 -16.60 15.95 -2.86 -0.05 -16.64 16
26 H 0.10 1.70 6.73 -2.39 -0.02 1.68 16
27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16
28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16
29 H 0.15 -0.20 8.14 -2.39 -0.02 -0.22 16
30 H 0.14 -0.03 8.14 -2.39 -0.02 -0.05 16
31 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16
32 H 0.14 -0.44 8.14 -2.38 -0.02 -0.46 16
33 H 0.42 3.73 8.62 -92.70 -0.80 2.94 16
34 H 0.41 7.98 8.49 -92.71 -0.79 7.20 16
35 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16
36 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16
37 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16
38 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16
39 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16
40 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16
41 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16
Total: -1.00 -86.96 348.14 0.38 -86.58
By element:
Atomic # 1 Polarization: 7.97 SS G_CDS: -0.53 Total: 7.45 kcal
Atomic # 6 Polarization: 12.64 SS G_CDS: 5.95 Total: 18.59 kcal
Atomic # 7 Polarization: -99.33 SS G_CDS: -6.91 Total: -106.24 kcal
Atomic # 8 Polarization: -51.98 SS G_CDS: -0.16 Total: -52.14 kcal
Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal
Total: -86.96 0.38 -86.58 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000425438304.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -48.929 kcal
(2) G-P(sol) polarization free energy of solvation -86.957 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.886 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.378 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.579 kcal
(6) G-S(sol) free energy of system = (1) + (5) -135.508 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.66 seconds