Wall clock time and date at job start Tue Mar 31 2020 05:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99810 * 2 1 4 4 H 1.48501 * 109.47089 * 269.99617 * 3 2 1 5 5 H 1.48498 * 109.47205 * 30.00334 * 3 2 1 6 6 H 1.48500 * 109.47034 * 149.99888 * 3 2 1 7 7 C 1.37881 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99735 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99559 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46599 * 180.02562 * 9 7 2 11 11 N 1.46504 * 109.46846 * 180.02562 * 10 9 7 12 12 C 1.34783 * 119.99887 * 180.02562 * 11 10 9 13 13 O 1.21589 * 119.99960 * 359.97438 * 12 11 10 14 14 N 1.34769 * 119.99674 * 179.97438 * 12 11 10 15 15 C 1.46508 * 119.99830 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47156 * 179.97438 * 15 14 12 17 17 N 1.46895 * 109.47191 * 179.97438 * 16 15 14 18 18 C 1.47053 * 110.99922 * 314.26633 * 17 16 15 19 19 C 1.55010 * 108.79529 * 181.56502 * 18 17 16 20 20 H 1.08999 * 112.15415 * 186.24317 * 19 18 17 21 21 C 1.54719 * 108.45343 * 311.29146 * 19 18 17 22 22 C 1.54549 * 103.82223 * 87.79131 * 21 19 18 23 23 C 1.54709 * 103.82412 * 0.02562 * 22 21 19 24 24 H 1.09001 * 112.16355 * 147.18690 * 23 22 21 25 25 C 1.47047 * 111.00174 * 190.00057 * 17 16 15 26 26 O 1.44651 * 106.58866 * 63.11759 * 19 18 17 27 27 H 0.97002 * 120.00201 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46980 * 60.00349 * 9 7 2 29 29 H 1.09003 * 109.47178 * 299.99934 * 9 7 2 30 30 H 1.08998 * 109.47223 * 60.00433 * 10 9 7 31 31 H 1.09003 * 109.47249 * 299.99826 * 10 9 7 32 32 H 0.96998 * 119.99908 * 359.97438 * 11 10 9 33 33 H 0.97004 * 120.00527 * 359.97438 * 14 12 11 34 34 H 1.09002 * 109.46762 * 59.99850 * 15 14 12 35 35 H 1.08996 * 109.46963 * 300.00236 * 15 14 12 36 36 H 1.09008 * 109.46899 * 60.00093 * 16 15 14 37 37 H 1.08998 * 109.47036 * 300.00578 * 16 15 14 38 38 H 1.08998 * 109.56660 * 301.60920 * 18 17 16 39 39 H 1.08994 * 109.57110 * 61.85222 * 18 17 16 40 40 H 1.09003 * 110.56048 * 206.38019 * 21 19 18 41 41 H 1.09001 * 110.55335 * 329.20618 * 21 19 18 42 42 H 1.09003 * 110.55622 * 241.41527 * 22 21 19 43 43 H 1.09006 * 110.55402 * 118.58578 * 22 21 19 44 44 H 1.09006 * 109.56951 * 58.38976 * 25 17 16 45 45 H 1.08994 * 109.67242 * 298.08921 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 7 1.5128 -4.9308 0.0012 12 6 2.1867 -6.0980 0.0027 13 8 3.4026 -6.0980 0.0040 14 7 1.5128 -7.2651 0.0026 15 6 2.2454 -8.5339 0.0036 16 6 1.2511 -9.6968 0.0040 17 7 1.9856 -10.9690 0.0044 18 6 3.0790 -10.9465 -0.9787 19 6 3.7924 -12.3226 -0.9637 20 1 4.6814 -12.3316 -1.5944 21 6 4.1000 -12.6988 0.5052 22 6 2.8205 -13.4269 0.9756 23 6 1.9011 -13.3996 -0.2684 24 1 1.2679 -14.2846 -0.3312 25 6 1.0783 -12.1014 -0.2336 26 8 2.8134 -13.3000 -1.3863 27 1 -0.4850 0.8400 0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 2.8712 -3.6039 0.8923 31 1 2.8726 -3.6046 -0.8877 32 1 0.5428 -4.9307 0.0005 33 1 0.5428 -7.2652 0.0019 34 1 2.8714 -8.5912 0.8941 35 1 2.8727 -8.5919 -0.8858 36 1 0.6248 -9.6396 -0.8863 37 1 0.6241 -9.6385 0.8937 38 1 2.6733 -10.7518 -1.9715 39 1 3.7908 -10.1643 -0.7153 40 1 4.9609 -13.3654 0.5574 41 1 4.2718 -11.8028 1.1017 42 1 2.3586 -12.8916 1.8052 43 1 3.0477 -14.4542 1.2608 44 1 0.5687 -11.9667 -1.1878 45 1 0.3425 -12.1569 0.5685 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458650652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:43 Heat of formation + Delta-G solvation = -71.068831 kcal Electronic energy + Delta-G solvation = -23769.455899 eV Core-core repulsion = 20207.743383 eV Total energy + Delta-G solvation = -3561.712515 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.12813 -39.57148 -36.98134 -34.94193 -34.18109 -32.81978 -32.28948 -31.85486 -30.02947 -28.68827 -25.90802 -25.01579 -24.36286 -22.14570 -21.38440 -21.00794 -20.56529 -19.94502 -18.11375 -17.32795 -16.43409 -16.40601 -16.10312 -15.53285 -15.38735 -15.01064 -14.52941 -14.49963 -14.46385 -14.14577 -13.80731 -13.41898 -13.36538 -13.06080 -12.87347 -12.32971 -12.25682 -11.99586 -11.79420 -11.59821 -11.33126 -11.18427 -11.11428 -11.01934 -10.79942 -10.62785 -10.31253 -9.99798 -9.93277 -9.55886 -9.26103 -9.03795 -8.76618 -8.48251 -8.24729 -6.08924 -4.11453 2.86505 3.30036 3.36066 3.40523 3.49121 3.58841 3.60898 4.26642 4.36964 4.40293 4.42149 4.44274 4.58338 4.70841 4.78171 4.80136 4.95048 5.04554 5.15786 5.23375 5.27916 5.28219 5.38237 5.44751 5.56864 5.61006 5.71535 5.74621 5.74934 5.86668 6.29644 6.40262 6.40375 6.46142 6.58277 6.64157 6.78222 7.00011 7.21815 7.57085 7.63701 7.90321 8.26134 8.42807 8.93097 8.99437 9.53237 11.02738 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.049972 B = 0.002035 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.181371 B =13758.412684 C =14032.356619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.738 5.738 12 C 0.699 3.301 13 O -0.598 6.598 14 N -0.754 5.754 15 C 0.139 3.861 16 C 0.045 3.955 17 N -0.527 5.527 18 C 0.020 3.980 19 C 0.072 3.928 20 H 0.117 0.883 21 C -0.135 4.135 22 C -0.135 4.135 23 C 0.071 3.929 24 H 0.114 0.886 25 C 0.030 3.970 26 O -0.373 6.373 27 H 0.262 0.738 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.393 0.607 33 H 0.394 0.606 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.042 0.958 37 H 0.085 0.915 38 H 0.046 0.954 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.044 0.956 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.703 -28.689 0.540 28.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.392 5.392 12 C 0.399 3.601 13 O -0.476 6.476 14 N -0.411 5.411 15 C 0.013 3.987 16 C -0.083 4.083 17 N -0.252 5.252 18 C -0.108 4.108 19 C 0.014 3.986 20 H 0.134 0.866 21 C -0.173 4.173 22 C -0.173 4.173 23 C 0.013 3.987 24 H 0.132 0.868 25 C -0.098 4.098 26 O -0.291 6.291 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.226 0.774 33 H 0.227 0.773 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.103 0.897 38 H 0.065 0.935 39 H 0.113 0.887 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.063 0.937 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.904 -28.706 0.800 28.780 hybrid contribution -1.016 1.228 -0.650 1.721 sum 0.887 -27.477 0.149 27.492 Atomic orbital electron populations 1.69954 1.06091 1.26847 1.50478 1.25003 0.94905 0.99427 0.95027 0.86504 0.79844 0.82967 0.78188 1.20570 1.21194 1.19708 1.21057 0.93283 0.90353 1.51213 0.92200 1.19327 0.94259 0.91093 0.97796 1.21596 0.95640 0.80380 1.00659 1.45534 1.09844 1.05317 1.78491 1.16020 0.85617 0.80420 0.78042 1.90891 1.11761 1.86653 1.58327 1.45018 1.09422 1.04715 1.81994 1.21159 0.93933 0.80810 1.02749 1.22303 0.95896 0.88368 1.01772 1.62119 1.11393 1.02183 1.49496 1.23231 0.94753 0.98528 0.94319 1.23769 0.91791 0.87234 0.95817 0.86567 1.22793 0.97728 1.01197 0.95581 1.22804 0.95720 1.00510 0.98226 1.23450 0.91976 0.96899 0.86354 0.86795 1.22839 0.94985 0.90988 1.01002 1.89264 1.40107 1.61384 1.38388 0.92871 0.95990 0.95962 0.92750 0.92798 0.77396 0.77324 0.90905 0.91701 0.94018 0.89705 0.93544 0.88729 0.91429 0.89566 0.89737 0.91520 0.93732 0.89515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.14 3.04 5.61 -4.04 -0.02 3.01 16 11 N -0.74 -13.11 5.56 -65.22 -0.36 -13.48 16 12 C 0.70 12.30 8.57 -86.92 -0.74 11.56 16 13 O -0.60 -12.97 16.34 5.29 0.09 -12.88 16 14 N -0.75 -9.40 5.56 -65.22 -0.36 -9.77 16 15 C 0.14 1.52 4.92 -4.04 -0.02 1.50 16 16 C 0.04 0.36 5.40 -3.83 -0.02 0.34 16 17 N -0.53 -4.24 3.95 -232.58 -0.92 -5.16 16 18 C 0.02 0.17 4.27 -2.68 -0.01 0.16 16 19 C 0.07 0.58 4.76 -24.76 -0.12 0.46 16 20 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 21 C -0.14 -0.97 6.26 -25.01 -0.16 -1.12 16 22 C -0.13 -0.89 6.25 -25.02 -0.16 -1.05 16 23 C 0.07 0.51 4.69 -25.45 -0.12 0.39 16 24 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 25 C 0.03 0.21 5.10 -3.36 -0.02 0.20 16 26 O -0.37 -3.59 11.23 -35.23 -0.40 -3.98 16 27 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.39 5.95 8.49 -40.82 -0.35 5.60 16 33 H 0.39 3.74 8.49 -40.82 -0.35 3.40 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.78 6.37 -51.93 -0.33 0.45 16 36 H 0.04 0.33 8.05 -51.92 -0.42 -0.09 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.83 6.34 -51.93 -0.33 0.50 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.66 7.87 -51.93 -0.41 0.25 16 42 H 0.08 0.56 7.85 -51.93 -0.41 0.15 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.04 0.35 8.10 -51.93 -0.42 -0.07 16 45 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 357.57 15.07 5.39 5.39 Total: -1.00 -33.19 357.57 -10.41 -43.60 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -7.62 Total: 2.94 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -1.94 Total: 2.33 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -0.91 Total: -53.84 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.31 Total: -16.86 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.19 -10.41 -43.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458650652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.466 kcal (2) G-P(sol) polarization free energy of solvation -33.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds