Wall clock time and date at job start Tue Mar 31 2020 05:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99810 * 2 1 4 4 H 1.48501 * 109.47089 * 269.99617 * 3 2 1 5 5 H 1.48498 * 109.47205 * 30.00334 * 3 2 1 6 6 H 1.48500 * 109.47034 * 149.99888 * 3 2 1 7 7 C 1.37881 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99735 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99559 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46599 * 180.02562 * 9 7 2 11 11 N 1.46504 * 109.46846 * 180.02562 * 10 9 7 12 12 C 1.34783 * 119.99887 * 180.02562 * 11 10 9 13 13 O 1.21589 * 119.99960 * 359.97438 * 12 11 10 14 14 N 1.34769 * 119.99674 * 179.97438 * 12 11 10 15 15 C 1.46508 * 119.99830 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47156 * 179.97438 * 15 14 12 17 17 N 1.46895 * 109.47191 * 179.97438 * 16 15 14 18 18 C 1.47053 * 110.99922 * 314.26633 * 17 16 15 19 19 C 1.55010 * 108.79529 * 181.56502 * 18 17 16 20 20 H 1.08999 * 112.15415 * 186.24317 * 19 18 17 21 21 C 1.54719 * 108.45343 * 311.29146 * 19 18 17 22 22 C 1.54549 * 103.82223 * 87.79131 * 21 19 18 23 23 C 1.54709 * 103.82412 * 0.02562 * 22 21 19 24 24 H 1.09001 * 112.16355 * 147.18690 * 23 22 21 25 25 C 1.47047 * 111.00174 * 190.00057 * 17 16 15 26 26 O 1.44651 * 106.58866 * 63.11759 * 19 18 17 27 27 H 0.97002 * 120.00201 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46980 * 60.00349 * 9 7 2 29 29 H 1.09003 * 109.47178 * 299.99934 * 9 7 2 30 30 H 1.08998 * 109.47223 * 60.00433 * 10 9 7 31 31 H 1.09003 * 109.47249 * 299.99826 * 10 9 7 32 32 H 0.96998 * 119.99908 * 359.97438 * 11 10 9 33 33 H 0.97004 * 120.00527 * 359.97438 * 14 12 11 34 34 H 1.09002 * 109.46762 * 59.99850 * 15 14 12 35 35 H 1.08996 * 109.46963 * 300.00236 * 15 14 12 36 36 H 1.09008 * 109.46899 * 60.00093 * 16 15 14 37 37 H 1.08998 * 109.47036 * 300.00578 * 16 15 14 38 38 H 1.08998 * 109.56660 * 301.60920 * 18 17 16 39 39 H 1.08994 * 109.57110 * 61.85222 * 18 17 16 40 40 H 1.09003 * 110.56048 * 206.38019 * 21 19 18 41 41 H 1.09001 * 110.55335 * 329.20618 * 21 19 18 42 42 H 1.09003 * 110.55622 * 241.41527 * 22 21 19 43 43 H 1.09006 * 110.55402 * 118.58578 * 22 21 19 44 44 H 1.09006 * 109.56951 * 58.38976 * 25 17 16 45 45 H 1.08994 * 109.67242 * 298.08921 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 7 1.5128 -4.9308 0.0012 12 6 2.1867 -6.0980 0.0027 13 8 3.4026 -6.0980 0.0040 14 7 1.5128 -7.2651 0.0026 15 6 2.2454 -8.5339 0.0036 16 6 1.2511 -9.6968 0.0040 17 7 1.9856 -10.9690 0.0044 18 6 3.0790 -10.9465 -0.9787 19 6 3.7924 -12.3226 -0.9637 20 1 4.6814 -12.3316 -1.5944 21 6 4.1000 -12.6988 0.5052 22 6 2.8205 -13.4269 0.9756 23 6 1.9011 -13.3996 -0.2684 24 1 1.2679 -14.2846 -0.3312 25 6 1.0783 -12.1014 -0.2336 26 8 2.8134 -13.3000 -1.3863 27 1 -0.4850 0.8400 0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 2.8712 -3.6039 0.8923 31 1 2.8726 -3.6046 -0.8877 32 1 0.5428 -4.9307 0.0005 33 1 0.5428 -7.2652 0.0019 34 1 2.8714 -8.5912 0.8941 35 1 2.8727 -8.5919 -0.8858 36 1 0.6248 -9.6396 -0.8863 37 1 0.6241 -9.6385 0.8937 38 1 2.6733 -10.7518 -1.9715 39 1 3.7908 -10.1643 -0.7153 40 1 4.9609 -13.3654 0.5574 41 1 4.2718 -11.8028 1.1017 42 1 2.3586 -12.8916 1.8052 43 1 3.0477 -14.4542 1.2608 44 1 0.5687 -11.9667 -1.1878 45 1 0.3425 -12.1569 0.5685 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458650652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:42 Heat of formation + Delta-G solvation = -96.272668 kcal Electronic energy + Delta-G solvation = -23770.548819 eV Core-core repulsion = 20207.743383 eV Total energy + Delta-G solvation = -3562.805436 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.75239 -40.95996 -37.82550 -36.58072 -35.36576 -34.77997 -32.92147 -32.46079 -31.64771 -29.82029 -26.98463 -26.20562 -25.42136 -23.13705 -22.71091 -22.04998 -21.86254 -20.56762 -19.45246 -18.45221 -18.00202 -17.28565 -17.17705 -16.63228 -16.48976 -16.25909 -15.85323 -15.56976 -15.28373 -15.21963 -14.94338 -14.75241 -14.50115 -14.23173 -13.82500 -13.63408 -13.21006 -13.02334 -12.94788 -12.60479 -12.52769 -12.51911 -12.26302 -12.20512 -11.92411 -11.71609 -11.68890 -11.51140 -11.33992 -11.23459 -10.60599 -10.59290 -10.35619 -9.72949 -9.41211 -8.23679 -6.33733 1.42330 1.42902 1.54150 1.68507 2.15308 2.41365 2.79916 2.95372 3.11155 3.45114 3.63044 3.77408 3.87087 3.87718 3.93062 4.04524 4.16854 4.37704 4.42831 4.47919 4.50580 4.52749 4.62025 4.66527 4.80026 4.84178 4.87250 4.89906 4.92090 4.99308 5.09665 5.20898 5.31154 5.32822 5.44026 5.51933 5.60193 5.79171 5.81200 5.91056 5.96023 6.04179 6.17788 6.79451 7.12121 7.35482 7.58563 8.88172 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.049972 B = 0.002035 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.181371 B =13758.412684 C =14032.356619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.160 3.840 11 N -0.733 5.733 12 C 0.698 3.302 13 O -0.640 6.640 14 N -0.732 5.732 15 C 0.141 3.859 16 C 0.056 3.944 17 N -0.528 5.528 18 C 0.022 3.978 19 C 0.068 3.932 20 H 0.123 0.877 21 C -0.134 4.134 22 C -0.131 4.131 23 C 0.066 3.934 24 H 0.132 0.868 25 C 0.031 3.969 26 O -0.395 6.395 27 H 0.266 0.734 28 H 0.009 0.991 29 H 0.010 0.990 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.408 0.592 33 H 0.412 0.588 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.048 0.952 37 H 0.101 0.899 38 H 0.035 0.965 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.038 0.962 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.265 -29.523 0.953 29.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.036 3.964 11 N -0.387 5.387 12 C 0.398 3.602 13 O -0.522 6.522 14 N -0.389 5.389 15 C 0.017 3.983 16 C -0.072 4.072 17 N -0.254 5.254 18 C -0.107 4.107 19 C 0.010 3.990 20 H 0.141 0.859 21 C -0.172 4.172 22 C -0.169 4.169 23 C 0.009 3.991 24 H 0.149 0.851 25 C -0.097 4.097 26 O -0.314 6.314 27 H 0.074 0.926 28 H 0.027 0.973 29 H 0.028 0.972 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.243 0.757 33 H 0.248 0.752 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.119 0.881 38 H 0.053 0.947 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.056 0.944 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.409 -29.590 1.214 29.648 hybrid contribution -0.904 1.412 -0.786 1.851 sum 0.505 -28.178 0.428 28.185 Atomic orbital electron populations 1.70053 1.07501 1.27979 1.51047 1.25874 0.95823 1.03092 0.94460 0.85441 0.78630 0.78448 0.78505 1.19789 1.20511 1.19077 1.21471 0.93616 0.91917 1.51458 0.92300 1.19128 0.94227 0.91617 0.96391 1.21074 0.94631 0.81115 0.99590 1.45206 1.10416 1.04387 1.78728 1.16132 0.85116 0.81257 0.77734 1.90864 1.13807 1.87346 1.60198 1.44812 1.10366 1.03646 1.80115 1.21204 0.94501 0.80909 1.01696 1.22209 0.95021 0.87169 1.02843 1.62153 1.11559 1.02435 1.49222 1.23174 0.94915 0.98775 0.93803 1.23869 0.91819 0.86662 0.96602 0.85921 1.22782 0.98461 1.01162 0.94807 1.22794 0.95169 1.00993 0.97950 1.23670 0.91966 0.97603 0.85886 0.85086 1.22899 0.95007 0.90447 1.01345 1.89242 1.40826 1.61650 1.39680 0.92552 0.97282 0.97214 0.93825 0.93896 0.75700 0.75170 0.92066 0.92770 0.93362 0.88099 0.94711 0.89399 0.90743 0.90204 0.89572 0.90578 0.94414 0.87662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.22 13.29 21.45 0.28 -53.93 16 2 C 0.01 0.35 5.46 84.66 0.46 0.81 16 3 Si 0.97 43.69 29.54 68.60 2.03 45.72 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.55 -30.62 9.11 25.60 0.23 -30.39 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.02 1.21 5.09 29.85 0.15 1.36 16 10 C 0.16 7.01 5.61 86.38 0.48 7.49 16 11 N -0.73 -25.68 5.56 -478.52 -2.66 -28.34 16 12 C 0.70 24.17 8.57 179.05 1.53 25.70 16 13 O -0.64 -27.93 16.34 -4.00 -0.07 -28.00 16 14 N -0.73 -17.24 5.56 -478.52 -2.66 -19.90 16 15 C 0.14 2.97 4.92 86.38 0.43 3.39 16 16 C 0.06 0.79 5.40 86.30 0.47 1.26 16 17 N -0.53 -7.75 3.95 -889.75 -3.51 -11.26 16 18 C 0.02 0.36 4.27 86.96 0.37 0.73 16 19 C 0.07 1.06 4.76 31.87 0.15 1.21 16 20 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 21 C -0.13 -1.78 6.26 31.71 0.20 -1.59 16 22 C -0.13 -1.50 6.25 31.70 0.20 -1.30 16 23 C 0.07 0.83 4.69 31.43 0.15 0.98 16 24 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 25 C 0.03 0.38 5.10 86.52 0.44 0.82 16 26 O -0.39 -7.21 11.23 -148.98 -1.67 -8.89 16 27 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 28 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.04 1.96 8.14 -2.39 -0.02 1.95 16 32 H 0.41 11.91 8.49 -92.71 -0.79 11.13 16 33 H 0.41 6.88 8.49 -92.71 -0.79 6.09 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.05 1.29 6.37 -2.39 -0.02 1.27 16 36 H 0.05 0.66 8.05 -2.38 -0.02 0.64 16 37 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.09 1.56 6.34 -2.39 -0.02 1.54 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.08 1.16 7.87 -2.39 -0.02 1.14 16 42 H 0.09 0.96 7.85 -2.39 -0.02 0.95 16 43 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 44 H 0.04 0.53 8.10 -2.38 -0.02 0.51 16 45 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -70.78 357.57 -3.58 -74.36 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -0.59 Total: 19.76 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: 5.27 Total: 10.48 kcal Atomic # 7 Polarization: -104.89 SS G_CDS: -8.55 Total: -113.43 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -1.74 Total: -36.89 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -70.78 -3.58 -74.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458650652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.912 kcal (2) G-P(sol) polarization free energy of solvation -70.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds