Wall clock time and date at job start Tue Mar 31 2020 04:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99892 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 120.00241 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.47135 * 90.00125 * 8 6 4 10 10 H 1.48503 * 109.47215 * 210.00315 * 8 6 4 11 11 H 1.48508 * 109.46958 * 330.00276 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.53000 * 109.47114 * 293.94896 * 12 2 1 14 14 H 1.09000 * 109.46550 * 60.00064 * 13 12 2 15 15 O 1.42901 * 109.46928 * 300.00575 * 13 12 2 16 16 C 1.52996 * 109.47000 * 180.02562 * 13 12 2 17 17 N 1.46899 * 109.46798 * 185.00066 * 16 13 12 18 18 C 1.46901 * 111.00076 * 179.97438 * 17 16 13 19 19 C 1.50693 * 109.47360 * 180.02562 * 18 17 16 20 20 C 1.38237 * 119.59287 * 94.72793 * 19 18 17 21 21 C 1.38585 * 119.18956 * 179.77278 * 20 19 18 22 22 C 1.38874 * 118.40375 * 0.49198 * 21 20 19 23 23 F 1.35102 * 120.44978 * 179.77301 * 22 21 20 24 24 C 1.38424 * 119.11182 * 359.75036 * 22 21 20 25 25 N 1.31854 * 119.59153 * 274.99917 * 19 18 17 26 26 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 27 27 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 29 29 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 30 30 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 31 31 H 0.97002 * 119.99998 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 33 33 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 34 34 H 0.96697 * 113.99735 * 299.99403 * 15 13 12 35 35 H 1.08995 * 109.47058 * 304.99907 * 16 13 12 36 36 H 1.08998 * 109.46953 * 65.00454 * 16 13 12 37 37 H 1.00896 * 111.00687 * 303.95477 * 17 16 13 38 38 H 1.09005 * 109.47140 * 300.00367 * 18 17 16 39 39 H 1.09001 * 109.46992 * 59.99753 * 18 17 16 40 40 H 1.08003 * 120.40315 * 359.97438 * 20 19 18 41 41 H 1.08004 * 120.79714 * 180.21516 * 21 20 19 42 42 H 1.08003 * 119.63951 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 1.7143 3.9390 2.6618 8 14 2.9998 4.2763 0.2309 9 1 2.0631 4.9799 -0.6817 10 1 3.8862 5.2680 0.8913 11 1 3.8238 3.3176 -0.5485 12 6 1.9954 -0.7660 -1.1377 13 6 1.6315 -2.2426 -0.9704 14 1 0.5472 -2.3474 -0.9323 15 8 2.2010 -2.7391 0.2426 16 6 2.1803 -3.0404 -2.1549 17 7 1.7299 -4.4352 -2.0566 18 6 2.2384 -5.2331 -3.1803 19 6 1.7564 -6.6545 -3.0458 20 6 0.6073 -7.0509 -3.7040 21 6 0.1742 -8.3613 -3.5784 22 6 0.9119 -9.2273 -2.7820 23 9 0.5247 -10.5124 -2.6268 24 6 2.0497 -8.7565 -2.1496 25 7 2.4331 -7.5035 -2.2974 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.0797 1.3445 -0.1083 30 1 1.5610 1.9274 -0.8309 31 1 1.9882 4.8554 2.8235 32 1 1.5611 -0.3871 -2.0628 33 1 3.0797 -0.6610 -1.1757 34 1 3.1653 -2.6770 0.2786 35 1 1.8160 -2.6058 -3.0857 36 1 3.2698 -3.0086 -2.1409 37 1 2.0000 -4.8410 -1.1732 38 1 1.8742 -4.8135 -4.1181 39 1 3.3283 -5.2165 -3.1739 40 1 0.0555 -6.3487 -4.3115 41 1 -0.7182 -8.6997 -4.0840 42 1 2.6296 -9.4226 -1.5279 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591754791.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:54 Heat of formation + Delta-G solvation = -49.050513 kcal Electronic energy + Delta-G solvation = -22915.288223 eV Core-core repulsion = 19231.070189 eV Total energy + Delta-G solvation = -3684.218034 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.39906 -40.59861 -38.42534 -36.24821 -35.13802 -32.95107 -32.47419 -31.91538 -29.78231 -27.81385 -26.73342 -25.14878 -24.33197 -23.16709 -22.24280 -21.18641 -20.11108 -18.09280 -17.77128 -17.14917 -16.83952 -16.26232 -16.13570 -15.90282 -15.34122 -14.88979 -14.74722 -14.50652 -14.32769 -14.16577 -13.88789 -13.65260 -13.43242 -13.07657 -12.84130 -12.54696 -12.33178 -12.20490 -11.94751 -11.59953 -11.26364 -10.99136 -10.74036 -10.68814 -10.39571 -10.27732 -10.06906 -9.92150 -9.61853 -9.34611 -9.21737 -8.67865 -8.57332 -7.33817 -6.04077 -4.01199 0.42440 0.64027 3.07704 3.27150 3.34867 3.36005 3.53468 3.77187 4.02888 4.19540 4.29563 4.39808 4.41715 4.57442 4.79176 4.89405 5.03238 5.11387 5.16622 5.20088 5.29322 5.34606 5.40185 5.41017 5.53614 5.57651 5.63877 5.93305 6.11684 6.13737 6.23820 6.31810 6.67233 6.71123 6.83936 6.99899 7.12431 7.38749 7.59518 7.89926 7.92060 8.09082 8.67328 9.05885 9.57364 11.09136 Molecular weight = 297.16amu Principal moments of inertia in cm(-1) A = 0.041818 B = 0.002156 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.415307 B =12984.832303 C =13128.268557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.520 5.520 3 C 0.162 3.838 4 C -0.507 4.507 5 H 0.082 0.918 6 C 0.067 3.933 7 N -0.900 5.900 8 Si 0.876 3.124 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.022 3.978 13 C 0.114 3.886 14 H 0.105 0.895 15 O -0.544 6.544 16 C 0.028 3.972 17 N -0.680 5.680 18 C 0.108 3.892 19 C 0.123 3.877 20 C -0.121 4.121 21 C -0.110 4.110 22 C 0.044 3.956 23 F -0.131 7.131 24 C 0.078 3.922 25 N -0.452 5.452 26 H 0.010 0.990 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.026 0.974 30 H -0.018 1.018 31 H 0.263 0.737 32 H 0.030 0.970 33 H 0.069 0.931 34 H 0.368 0.632 35 H 0.080 0.920 36 H 0.036 0.964 37 H 0.355 0.645 38 H 0.090 0.910 39 H 0.051 0.949 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.048 -24.406 -16.361 29.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.243 5.243 3 C 0.036 3.964 4 C -0.545 4.545 5 H 0.100 0.900 6 C -0.135 4.135 7 N -0.539 5.539 8 Si 0.704 3.296 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.193 1.193 12 C -0.108 4.108 13 C 0.054 3.946 14 H 0.123 0.877 15 O -0.348 6.348 16 C -0.102 4.102 17 N -0.312 5.312 18 C -0.021 4.021 19 C -0.015 4.015 20 C -0.141 4.141 21 C -0.136 4.136 22 C 0.023 3.977 23 F -0.110 7.110 24 C -0.081 4.081 25 N -0.161 5.161 26 H 0.028 0.972 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.044 0.956 30 H 0.000 1.000 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.214 0.786 35 H 0.099 0.901 36 H 0.054 0.946 37 H 0.174 0.826 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.165 0.835 41 H 0.166 0.834 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.354 -24.181 -15.548 28.751 hybrid contribution 0.871 0.511 -1.779 2.046 sum 0.517 -23.670 -17.328 29.339 Atomic orbital electron populations 1.22283 0.88234 0.99704 1.01035 1.61863 1.07411 1.15951 1.39097 1.20213 0.95048 0.84153 0.97023 1.21042 1.35432 0.97133 1.00925 0.90041 1.24916 0.95840 0.97388 0.95340 1.69896 1.46962 1.13201 1.23870 0.86854 0.80606 0.80019 0.82152 1.20410 1.21148 1.19327 1.22756 1.00382 0.94224 0.93451 1.21968 0.99171 0.90632 0.82860 0.87738 1.86625 1.24956 1.84805 1.38413 1.22718 0.97908 0.88907 1.00650 1.60442 1.63223 1.01935 1.05645 1.20795 0.98229 0.86907 0.96184 1.21253 0.91795 0.95724 0.92736 1.21920 0.96519 0.95500 1.00166 1.21702 1.00394 0.93555 0.97965 1.18843 0.97370 0.80223 1.01314 1.91531 1.90654 1.34558 1.94235 1.22892 0.93802 0.93015 0.98410 1.67546 1.31171 1.02235 1.15156 0.97171 0.93061 0.90266 0.95587 1.00041 0.92687 0.95176 0.91275 0.78563 0.90139 0.94603 0.82577 0.89206 0.93042 0.83463 0.83410 0.81506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 9.16 60.06 0.55 1.25 16 2 N -0.52 -10.83 4.62 -244.36 -1.13 -11.96 16 3 C 0.16 3.93 3.79 -4.97 -0.02 3.91 16 4 C -0.51 -14.54 9.07 -34.44 -0.31 -14.85 16 5 H 0.08 2.56 7.35 -52.48 -0.39 2.17 16 6 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 7 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 8 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 12 C 0.02 0.34 4.62 -3.82 -0.02 0.33 16 13 C 0.11 1.52 3.08 -26.73 -0.08 1.44 16 14 H 0.10 1.52 6.47 -51.93 -0.34 1.18 16 15 O -0.54 -8.03 12.72 -35.23 -0.45 -8.48 16 16 C 0.03 0.28 5.36 -3.83 -0.02 0.26 16 17 N -0.68 -6.80 6.49 -115.06 -0.75 -7.54 16 18 C 0.11 0.89 5.99 -4.98 -0.03 0.86 16 19 C 0.12 1.08 6.29 -82.59 -0.52 0.56 16 20 C -0.12 -0.86 9.72 -39.45 -0.38 -1.24 16 21 C -0.11 -0.75 10.16 -39.22 -0.40 -1.15 16 22 C 0.04 0.36 7.35 -39.28 -0.29 0.07 16 23 F -0.13 -1.11 17.28 2.25 0.04 -1.07 16 24 C 0.08 0.65 11.17 -17.47 -0.20 0.45 16 25 N -0.45 -4.43 10.27 -9.42 -0.10 -4.53 16 26 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.05 0.88 6.30 -51.93 -0.33 0.55 16 28 H 0.08 1.73 6.86 -51.93 -0.36 1.37 16 29 H 0.03 0.64 6.99 -51.93 -0.36 0.27 16 30 H -0.02 -0.44 7.55 -51.93 -0.39 -0.83 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 33 H 0.07 1.06 7.93 -51.93 -0.41 0.64 16 34 H 0.37 4.39 9.04 45.56 0.41 4.80 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.35 3.98 8.28 -39.29 -0.33 3.65 16 38 H 0.09 0.59 8.04 -51.93 -0.42 0.17 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.15 0.74 8.06 -52.48 -0.42 0.32 16 41 H 0.15 0.67 8.06 -52.48 -0.42 0.25 16 42 H 0.17 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 352.79 15.07 5.32 5.32 Total: -1.00 -32.80 352.79 -8.23 -41.03 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -5.45 Total: 3.64 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -1.81 Total: -6.28 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -1.20 Total: -51.00 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.45 Total: -8.48 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.07 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.80 -8.23 -41.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591754791.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.020 kcal (2) G-P(sol) polarization free energy of solvation -32.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds