Wall clock time and date at job start Tue Mar 31 2020 04:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99892 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 120.00241 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.47135 * 90.00125 * 8 6 4 10 10 H 1.48503 * 109.47215 * 210.00315 * 8 6 4 11 11 H 1.48508 * 109.46958 * 330.00276 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.53000 * 109.47114 * 293.94896 * 12 2 1 14 14 H 1.09000 * 109.46550 * 60.00064 * 13 12 2 15 15 O 1.42901 * 109.46928 * 300.00575 * 13 12 2 16 16 C 1.52996 * 109.47000 * 180.02562 * 13 12 2 17 17 N 1.46899 * 109.46798 * 185.00066 * 16 13 12 18 18 C 1.46901 * 111.00076 * 179.97438 * 17 16 13 19 19 C 1.50693 * 109.47360 * 180.02562 * 18 17 16 20 20 C 1.38237 * 119.59287 * 94.72793 * 19 18 17 21 21 C 1.38585 * 119.18956 * 179.77278 * 20 19 18 22 22 C 1.38874 * 118.40375 * 0.49198 * 21 20 19 23 23 F 1.35102 * 120.44978 * 179.77301 * 22 21 20 24 24 C 1.38424 * 119.11182 * 359.75036 * 22 21 20 25 25 N 1.31854 * 119.59153 * 274.99917 * 19 18 17 26 26 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 27 27 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 29 29 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 30 30 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 31 31 H 0.97002 * 119.99998 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 33 33 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 34 34 H 0.96697 * 113.99735 * 299.99403 * 15 13 12 35 35 H 1.08995 * 109.47058 * 304.99907 * 16 13 12 36 36 H 1.08998 * 109.46953 * 65.00454 * 16 13 12 37 37 H 1.00896 * 111.00687 * 303.95477 * 17 16 13 38 38 H 1.09005 * 109.47140 * 300.00367 * 18 17 16 39 39 H 1.09001 * 109.46992 * 59.99753 * 18 17 16 40 40 H 1.08003 * 120.40315 * 359.97438 * 20 19 18 41 41 H 1.08004 * 120.79714 * 180.21516 * 21 20 19 42 42 H 1.08003 * 119.63951 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 1.7143 3.9390 2.6618 8 14 2.9998 4.2763 0.2309 9 1 2.0631 4.9799 -0.6817 10 1 3.8862 5.2680 0.8913 11 1 3.8238 3.3176 -0.5485 12 6 1.9954 -0.7660 -1.1377 13 6 1.6315 -2.2426 -0.9704 14 1 0.5472 -2.3474 -0.9323 15 8 2.2010 -2.7391 0.2426 16 6 2.1803 -3.0404 -2.1549 17 7 1.7299 -4.4352 -2.0566 18 6 2.2384 -5.2331 -3.1803 19 6 1.7564 -6.6545 -3.0458 20 6 0.6073 -7.0509 -3.7040 21 6 0.1742 -8.3613 -3.5784 22 6 0.9119 -9.2273 -2.7820 23 9 0.5247 -10.5124 -2.6268 24 6 2.0497 -8.7565 -2.1496 25 7 2.4331 -7.5035 -2.2974 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.0797 1.3445 -0.1083 30 1 1.5610 1.9274 -0.8309 31 1 1.9882 4.8554 2.8235 32 1 1.5611 -0.3871 -2.0628 33 1 3.0797 -0.6610 -1.1757 34 1 3.1653 -2.6770 0.2786 35 1 1.8160 -2.6058 -3.0857 36 1 3.2698 -3.0086 -2.1409 37 1 2.0000 -4.8410 -1.1732 38 1 1.8742 -4.8135 -4.1181 39 1 3.3283 -5.2165 -3.1739 40 1 0.0555 -6.3487 -4.3115 41 1 -0.7182 -8.6997 -4.0840 42 1 2.6296 -9.4226 -1.5279 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591754791.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:53 Heat of formation + Delta-G solvation = -76.379814 kcal Electronic energy + Delta-G solvation = -22916.473310 eV Core-core repulsion = 19231.070189 eV Total energy + Delta-G solvation = -3685.403122 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.01505 -41.18118 -39.59258 -37.52302 -36.15506 -34.58820 -33.51192 -32.67277 -31.04168 -29.50288 -27.84394 -26.36848 -24.94758 -24.41159 -22.86535 -22.47566 -21.69293 -19.01866 -18.67689 -18.37073 -17.83881 -17.19292 -16.90874 -16.84389 -16.55007 -16.13338 -15.98964 -15.75683 -15.23805 -15.15487 -14.87866 -14.66342 -14.51969 -14.09825 -14.00631 -13.82415 -13.51033 -13.31156 -13.01926 -12.84077 -12.63609 -12.54188 -12.45184 -12.26814 -11.80899 -11.56462 -11.48997 -10.95066 -10.79863 -10.78433 -10.61965 -9.94657 -9.39831 -8.94676 -8.27013 -6.30754 -0.16407 0.09357 1.34859 1.37260 1.48050 2.35266 2.46317 2.94522 3.02651 3.06679 3.27595 3.51250 3.64154 3.73823 3.78808 3.86837 4.02861 4.16380 4.27101 4.33438 4.45866 4.52726 4.58634 4.66140 4.67960 4.71364 4.78532 4.83460 4.88399 4.91617 5.01399 5.03416 5.14132 5.28595 5.54612 5.58667 5.94348 6.01608 6.30780 6.37618 6.68673 6.76143 6.79639 6.99266 7.32719 8.89908 Molecular weight = 297.16amu Principal moments of inertia in cm(-1) A = 0.041818 B = 0.002156 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.415307 B =12984.832303 C =13128.268557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.541 5.541 3 C 0.172 3.828 4 C -0.517 4.517 5 H 0.033 0.967 6 C 0.002 3.998 7 N -0.950 5.950 8 Si 0.952 3.048 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.246 1.246 12 C 0.022 3.978 13 C 0.122 3.878 14 H 0.093 0.907 15 O -0.566 6.566 16 C 0.040 3.960 17 N -0.685 5.685 18 C 0.112 3.888 19 C 0.108 3.892 20 C -0.119 4.119 21 C -0.107 4.107 22 C 0.034 3.966 23 F -0.136 7.136 24 C 0.066 3.934 25 N -0.478 5.478 26 H 0.021 0.979 27 H 0.075 0.925 28 H 0.042 0.958 29 H 0.031 0.969 30 H -0.013 1.013 31 H 0.266 0.734 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.379 0.621 35 H 0.096 0.904 36 H 0.046 0.954 37 H 0.345 0.655 38 H 0.111 0.889 39 H 0.049 0.951 40 H 0.172 0.828 41 H 0.172 0.828 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.555 -24.938 -19.486 31.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.265 5.265 3 C 0.045 3.955 4 C -0.555 4.555 5 H 0.052 0.948 6 C -0.194 4.194 7 N -0.591 5.591 8 Si 0.775 3.225 9 H -0.193 1.193 10 H -0.208 1.208 11 H -0.169 1.169 12 C -0.107 4.107 13 C 0.063 3.937 14 H 0.110 0.890 15 O -0.371 6.371 16 C -0.090 4.090 17 N -0.317 5.317 18 C -0.017 4.017 19 C -0.030 4.030 20 C -0.139 4.139 21 C -0.134 4.134 22 C 0.012 3.988 23 F -0.115 7.115 24 C -0.092 4.092 25 N -0.187 5.187 26 H 0.040 0.960 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.004 0.996 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.227 0.773 35 H 0.115 0.885 36 H 0.064 0.936 37 H 0.164 0.836 38 H 0.129 0.871 39 H 0.067 0.933 40 H 0.189 0.811 41 H 0.190 0.810 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 0.249 -24.747 -18.695 31.016 hybrid contribution 0.614 0.576 -0.733 1.116 sum 0.863 -24.172 -19.428 31.023 Atomic orbital electron populations 1.22182 0.87874 1.00845 0.99722 1.61726 1.07993 1.14390 1.42394 1.19964 0.95274 0.85902 0.94380 1.21291 1.34743 0.97491 1.01973 0.94846 1.25932 0.97113 0.98496 0.97895 1.70067 1.48712 1.13841 1.26477 0.85644 0.79142 0.78643 0.79031 1.19288 1.20787 1.16933 1.22873 1.00785 0.94929 0.92101 1.21863 0.98607 0.89493 0.83780 0.88951 1.86592 1.26136 1.84891 1.39521 1.22548 0.98362 0.88612 0.99460 1.60441 1.63520 1.01988 1.05781 1.20849 0.98113 0.86540 0.96216 1.21479 0.92508 0.95908 0.93110 1.22183 0.95949 0.95964 0.99806 1.22017 1.00799 0.93284 0.97266 1.18983 0.97684 0.80264 1.01860 1.91517 1.90696 1.34920 1.94344 1.23127 0.94304 0.92996 0.98796 1.67530 1.32143 1.02892 1.16112 0.96043 0.90678 0.93942 0.95074 0.99557 0.92472 0.93567 0.90393 0.77283 0.88534 0.93566 0.83638 0.87090 0.93328 0.81091 0.81040 0.80315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.63 9.16 127.69 1.17 2.80 16 2 N -0.54 -22.10 4.62 -927.03 -4.28 -26.39 16 3 C 0.17 8.18 3.79 85.56 0.32 8.51 16 4 C -0.52 -30.35 9.07 25.60 0.23 -30.12 16 5 H 0.03 2.22 7.35 -2.91 -0.02 2.20 16 6 C 0.00 0.15 5.47 84.65 0.46 0.61 16 7 N -0.95 -60.20 13.96 21.45 0.30 -59.90 16 8 Si 0.95 43.86 27.47 68.60 1.88 45.74 16 9 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.25 -10.35 6.54 99.48 0.65 -9.70 16 12 C 0.02 0.64 4.62 86.30 0.40 1.04 16 13 C 0.12 3.01 3.08 30.59 0.09 3.10 16 14 H 0.09 2.50 6.47 -2.39 -0.02 2.49 16 15 O -0.57 -16.04 12.72 -148.98 -1.90 -17.94 16 16 C 0.04 0.69 5.36 86.30 0.46 1.15 16 17 N -0.69 -12.17 6.49 -517.95 -3.36 -15.53 16 18 C 0.11 1.56 5.99 85.55 0.51 2.07 16 19 C 0.11 1.71 6.29 42.55 0.27 1.98 16 20 C -0.12 -1.41 9.72 22.35 0.22 -1.19 16 21 C -0.11 -1.25 10.16 22.51 0.23 -1.03 16 22 C 0.03 0.51 7.35 22.47 0.17 0.67 16 23 F -0.14 -2.19 17.28 44.97 0.78 -1.41 16 24 C 0.07 1.07 11.17 84.73 0.95 2.02 16 25 N -0.48 -8.98 10.27 -183.70 -1.89 -10.87 16 26 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 2.51 6.30 -2.39 -0.02 2.50 16 28 H 0.04 1.93 6.86 -2.39 -0.02 1.91 16 29 H 0.03 1.45 6.99 -2.38 -0.02 1.44 16 30 H -0.01 -0.61 7.55 -2.39 -0.02 -0.63 16 31 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 32 H 0.05 1.23 8.12 -2.39 -0.02 1.21 16 33 H 0.08 2.14 7.93 -2.39 -0.02 2.13 16 34 H 0.38 8.57 9.04 -74.06 -0.67 7.90 16 35 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.35 7.28 8.28 -89.70 -0.74 6.54 16 38 H 0.11 1.06 8.04 -2.38 -0.02 1.04 16 39 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.17 1.12 8.06 -2.91 -0.02 1.09 16 41 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 42 H 0.18 2.17 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -72.70 352.79 -3.41 -76.11 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -0.43 Total: 18.56 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 5.48 Total: -8.38 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -9.23 Total: -112.68 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -1.90 Total: -17.94 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.78 Total: -1.41 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.88 Total: 45.74 kcal Total: -72.70 -3.41 -76.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591754791.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.266 kcal (2) G-P(sol) polarization free energy of solvation -72.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds