Wall clock time and date at job start Tue Mar 31 2020 05:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99638 * 2 1 4 4 H 1.48500 * 109.47106 * 239.99732 * 3 2 1 5 5 H 1.48503 * 109.47319 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47245 * 119.99724 * 3 2 1 7 7 C 1.38808 * 120.00437 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00318 * 176.38913 * 7 2 1 9 9 N 1.36936 * 119.99965 * 356.39966 * 7 2 1 10 10 C 1.46922 * 120.63241 * 215.68995 * 9 7 2 11 11 C 1.53199 * 108.77416 * 233.62728 * 10 9 7 12 12 C 1.53040 * 109.31281 * 305.36241 * 11 10 9 13 13 N 1.46497 * 109.45769 * 181.38432 * 12 11 10 14 14 C 1.34774 * 119.99929 * 154.97133 * 13 12 11 15 15 O 1.21589 * 120.00043 * 4.92644 * 14 13 12 16 16 N 1.34771 * 120.00342 * 184.92363 * 14 13 12 17 17 C 1.46929 * 120.62898 * 354.26038 * 16 14 13 18 18 C 1.53192 * 108.77772 * 233.58525 * 17 16 14 19 19 C 1.53036 * 109.31673 * 305.36693 * 18 17 16 20 20 C 1.53048 * 109.53563 * 61.36110 * 19 18 17 21 21 H 1.08995 * 109.52251 * 58.60737 * 20 19 18 22 22 O 1.42896 * 109.49477 * 178.68315 * 20 19 18 23 23 C 1.46924 * 120.63369 * 174.24075 * 16 14 13 24 24 C 1.53037 * 109.52613 * 61.37129 * 12 11 10 25 25 C 1.46929 * 120.63105 * 35.70879 * 9 7 2 26 26 H 0.97003 * 120.00721 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.59142 * 113.84236 * 10 9 7 28 28 H 1.09003 * 109.58576 * 353.41220 * 10 9 7 29 29 H 1.09001 * 109.49198 * 185.41216 * 11 10 9 30 30 H 1.08998 * 109.49508 * 65.31687 * 11 10 9 31 31 H 1.08992 * 109.45826 * 301.36024 * 12 11 10 32 32 H 0.96999 * 120.00330 * 334.97983 * 13 12 11 33 33 H 1.08995 * 109.58525 * 353.37769 * 17 16 14 34 34 H 1.09005 * 109.58380 * 113.65597 * 17 16 14 35 35 H 1.09001 * 109.49285 * 65.32355 * 18 17 16 36 36 H 1.09001 * 109.49767 * 185.38262 * 18 17 16 37 37 H 1.09001 * 109.45751 * 301.34857 * 19 18 17 38 38 H 1.08996 * 109.46051 * 181.38108 * 19 18 17 39 39 H 0.96698 * 113.99987 * 179.84030 * 22 20 19 40 40 H 1.08999 * 109.58611 * 6.62817 * 23 16 14 41 41 H 1.09002 * 109.70815 * 246.26508 * 23 16 14 42 42 H 1.09004 * 109.49637 * 58.58004 * 24 12 11 43 43 H 1.09001 * 109.49789 * 178.67359 * 24 12 11 44 44 H 1.09003 * 109.58656 * 246.16319 * 25 9 7 45 45 H 1.09007 * 109.58554 * 6.58409 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0886 -1.2030 -0.0584 9 7 1.3277 -2.3868 0.0755 10 6 1.8830 -3.5248 0.8206 11 6 1.9165 -4.7483 -0.1008 12 6 0.5167 -4.9922 -0.6694 13 7 0.5378 -6.1811 -1.5250 14 6 -0.5929 -6.8861 -1.7271 15 8 -1.6478 -6.4864 -1.2734 16 7 -0.5545 -8.0341 -2.4321 17 6 0.6850 -8.4659 -3.0923 18 6 0.3889 -8.7321 -4.5715 19 6 -0.7647 -9.7314 -4.6850 20 6 -2.0200 -9.1393 -4.0399 21 1 -2.2758 -8.2020 -4.5339 22 8 -3.1044 -10.0602 -4.1735 23 6 -1.7511 -8.8778 -2.5546 24 6 0.0808 -3.7786 -1.4935 25 6 0.0262 -2.5442 -0.5879 26 1 -0.4851 0.8400 -0.0004 27 1 1.2552 -3.7364 1.6861 28 1 2.8947 -3.2875 1.1497 29 1 2.2361 -5.6224 0.4666 30 1 2.6150 -4.5692 -0.9181 31 1 -0.1860 -5.1464 0.1494 32 1 1.3656 -6.4611 -1.9460 33 1 1.4374 -7.6821 -3.0055 34 1 1.0515 -9.3779 -2.6209 35 1 0.1110 -7.7985 -5.0606 36 1 1.2763 -9.1443 -5.0518 37 1 -0.4957 -10.6560 -4.1743 38 1 -0.9612 -9.9413 -5.7364 39 1 -3.9335 -9.7507 -3.7839 40 1 -2.6060 -8.3656 -2.1132 41 1 -1.5872 -9.8250 -2.0407 42 1 0.7968 -3.6087 -2.2976 43 1 -0.9064 -3.9624 -1.9176 44 1 -0.7531 -2.6757 0.1628 45 1 -0.1873 -1.6598 -1.1882 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593338546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:02 Heat of formation + Delta-G solvation = -57.122221 kcal Electronic energy + Delta-G solvation = -25051.027604 eV Core-core repulsion = 21489.919859 eV Total energy + Delta-G solvation = -3561.107745 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.52837 -38.54859 -37.25002 -35.96712 -34.42188 -32.74654 -32.01965 -30.36530 -29.84232 -29.15280 -25.83027 -24.66338 -23.38631 -22.18504 -22.00337 -20.95119 -19.74012 -19.22231 -18.17708 -17.44112 -16.74547 -16.30905 -15.65415 -15.06246 -15.00718 -14.71341 -14.54611 -14.05233 -13.73274 -13.47587 -13.40409 -13.28843 -12.95854 -12.90180 -12.47253 -12.39360 -12.20581 -11.51601 -11.47652 -11.39400 -10.94465 -10.87597 -10.79645 -10.78477 -10.49484 -10.32092 -10.19601 -10.08128 -9.92543 -9.77920 -9.56939 -8.86496 -8.51220 -8.34826 -6.54100 -5.76519 -3.30711 2.59972 3.31304 3.38352 3.43884 3.44460 3.77463 4.01589 4.45696 4.48678 4.51322 4.63252 4.71112 4.90924 5.11875 5.27890 5.32847 5.40393 5.41998 5.46850 5.50553 5.54539 5.60551 5.70911 5.75463 5.87108 5.92261 6.13319 6.26068 6.28533 6.42952 6.51698 6.64508 6.69958 6.82160 6.92973 6.98912 7.09442 7.30748 7.49453 7.78881 7.85900 8.06210 8.54762 8.73422 9.26148 9.84802 10.45033 11.29480 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.032150 B = 0.003037 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.699357 B = 9218.209599 C = 9386.174571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.010 3.990 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.257 4.257 8 H 0.063 0.937 9 N -0.594 5.594 10 C 0.149 3.851 11 C -0.139 4.139 12 C 0.168 3.832 13 N -0.738 5.738 14 C 0.706 3.294 15 O -0.586 6.586 16 N -0.632 5.632 17 C 0.110 3.890 18 C -0.133 4.133 19 C -0.111 4.111 20 C 0.090 3.910 21 H 0.060 0.940 22 O -0.566 6.566 23 C 0.100 3.900 24 C -0.147 4.147 25 C 0.171 3.829 26 H 0.256 0.744 27 H 0.020 0.980 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.389 0.611 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.382 0.618 40 H 0.095 0.905 41 H 0.069 0.931 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.017 0.983 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.669 -19.901 -8.189 21.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.189 4.189 3 Si 0.733 3.267 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.387 4.387 8 H 0.080 0.920 9 N -0.317 5.317 10 C 0.022 3.978 11 C -0.179 4.179 12 C 0.064 3.936 13 N -0.394 5.394 14 C 0.407 3.593 15 O -0.464 6.464 16 N -0.372 5.372 17 C -0.014 4.014 18 C -0.171 4.171 19 C -0.149 4.149 20 C 0.030 3.970 21 H 0.078 0.922 22 O -0.371 6.371 23 C -0.024 4.024 24 C -0.188 4.188 25 C 0.044 3.956 26 H 0.066 0.934 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.224 0.776 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.229 0.771 40 H 0.114 0.886 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.036 0.964 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.228 -19.772 -8.111 21.372 hybrid contribution 0.455 0.998 0.001 1.097 sum 0.683 -18.774 -8.110 20.462 Atomic orbital electron populations 1.69892 1.05359 1.25611 1.53758 1.25344 0.95530 0.98309 0.99733 0.86365 0.78913 0.83314 0.78081 1.20962 1.21580 1.20842 1.19087 0.90591 0.83172 1.45851 0.91955 1.44038 1.20768 1.09705 1.57219 1.20857 0.97756 0.86999 0.92189 1.22355 0.95361 0.99672 1.00494 1.20938 0.97836 0.82694 0.92124 1.45718 1.09732 1.30323 1.53602 1.15898 0.84705 0.79552 0.79103 1.90920 1.29204 1.70188 1.56039 1.47173 1.11649 1.22965 1.55408 1.21648 0.86492 1.00577 0.92651 1.21908 0.98731 1.00155 0.96343 1.21455 0.92957 0.98897 1.01572 1.22172 0.87604 0.92252 0.94926 0.92162 1.86489 1.21627 1.46649 1.82299 1.22107 0.89037 0.94685 0.96540 1.22613 0.99851 0.96787 0.99548 1.20937 0.86414 0.94617 0.93587 0.93403 0.96190 0.92371 0.92772 0.92029 0.90261 0.77557 0.90082 0.91228 0.91025 0.89874 0.91019 0.90953 0.77066 0.88638 0.91254 0.93036 0.92874 0.96437 0.88212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.26 10.66 55.49 0.59 -25.67 16 2 C 0.01 0.27 5.31 -17.43 -0.09 0.18 16 3 Si 0.90 21.58 29.55 -169.99 -5.02 16.55 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.26 -7.03 9.55 -15.06 -0.14 -7.17 16 8 H 0.06 1.66 7.83 -52.49 -0.41 1.24 16 9 N -0.59 -14.96 3.00 -172.32 -0.52 -15.48 16 10 C 0.15 3.09 6.52 -3.71 -0.02 3.07 16 11 C -0.14 -2.33 5.55 -26.61 -0.15 -2.48 16 12 C 0.17 3.01 2.38 -67.89 -0.16 2.85 16 13 N -0.74 -10.86 4.99 -58.64 -0.29 -11.15 16 14 C 0.71 11.15 8.25 -86.93 -0.72 10.43 16 15 O -0.59 -11.75 15.43 5.29 0.08 -11.67 16 16 N -0.63 -7.40 2.97 -178.50 -0.53 -7.93 16 17 C 0.11 0.90 6.38 -3.71 -0.02 0.87 16 18 C -0.13 -0.94 6.08 -26.61 -0.16 -1.10 16 19 C -0.11 -0.87 5.54 -26.69 -0.15 -1.02 16 20 C 0.09 0.84 3.62 -26.61 -0.10 0.74 16 21 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 22 O -0.57 -5.08 13.32 -35.23 -0.47 -5.55 16 23 C 0.10 1.06 6.07 -3.71 -0.02 1.04 16 24 C -0.15 -3.04 5.65 -26.61 -0.15 -3.19 16 25 C 0.17 4.23 5.26 -3.71 -0.02 4.21 16 26 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 1.16 7.93 -51.93 -0.41 0.74 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.08 1.61 7.65 -51.93 -0.40 1.21 16 32 H 0.39 4.55 6.10 -40.82 -0.25 4.30 16 33 H 0.08 0.60 5.66 -51.93 -0.29 0.31 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.38 2.08 9.08 45.56 0.41 2.49 16 40 H 0.10 1.16 7.00 -51.93 -0.36 0.79 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.05 1.13 8.09 -51.93 -0.42 0.71 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.10 2.77 5.96 -51.93 -0.31 2.46 16 LS Contribution 348.71 15.07 5.25 5.25 Total: -1.00 -33.17 348.71 -9.46 -42.63 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.65 Total: 4.58 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: -1.91 Total: 8.42 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: -0.75 Total: -60.23 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.39 Total: -17.22 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.17 -9.46 -42.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593338546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.492 kcal (2) G-P(sol) polarization free energy of solvation -33.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds