Wall clock time and date at job start Tue Mar 31 2020 04:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00011 * 2 1 4 4 C 1.53007 * 109.47191 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.46686 * 64.99989 * 4 3 2 6 6 C 1.36986 * 119.99885 * 90.00405 * 5 4 3 7 7 H 1.07999 * 119.99646 * 231.62263 * 6 5 4 8 8 C 1.38969 * 120.00137 * 51.89753 * 6 5 4 9 9 N 1.31411 * 119.99975 * 193.11652 * 8 6 5 10 10 Si 1.86806 * 119.99977 * 13.12218 * 8 6 5 11 11 H 1.48501 * 109.46919 * 3.67659 * 10 8 6 12 12 H 1.48496 * 109.47492 * 123.68124 * 10 8 6 13 13 H 1.48504 * 109.46946 * 243.68139 * 10 8 6 14 14 C 1.34775 * 120.00203 * 270.00047 * 5 4 3 15 15 O 1.21632 * 119.99627 * 356.82964 * 14 5 4 16 16 C 1.47360 * 120.00262 * 176.82747 * 14 5 4 17 17 C 1.41323 * 126.41723 * 7.27345 * 16 14 5 18 18 N 1.30443 * 108.02117 * 179.97438 * 17 16 14 19 19 N 1.39929 * 108.91781 * 0.02562 * 18 17 16 20 20 C 1.46502 * 125.75088 * 180.02562 * 19 18 17 21 21 C 1.53008 * 109.46861 * 304.97189 * 20 19 18 22 22 O 1.42896 * 109.46843 * 180.02562 * 21 20 19 23 23 C 1.42907 * 113.99876 * 180.02562 * 22 21 20 24 24 C 1.34281 * 108.49899 * 359.76019 * 19 18 17 25 25 H 1.09006 * 109.46506 * 299.99864 * 1 2 3 26 26 H 1.09000 * 109.47127 * 59.99150 * 1 2 3 27 27 H 1.08994 * 109.47645 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47610 * 60.00460 * 3 2 1 29 29 H 1.09003 * 109.47344 * 300.00101 * 3 2 1 30 30 H 1.08995 * 109.46807 * 305.00694 * 4 3 2 31 31 H 1.08997 * 109.47032 * 184.99717 * 4 3 2 32 32 H 0.96993 * 120.00134 * 0.02562 * 9 8 6 33 33 H 1.07993 * 125.98817 * 359.94143 * 17 16 14 34 34 H 1.09001 * 109.47494 * 64.97040 * 20 19 18 35 35 H 1.08998 * 109.47271 * 184.97540 * 20 19 18 36 36 H 1.09001 * 109.46944 * 300.00187 * 21 20 19 37 37 H 1.08998 * 109.46892 * 60.00118 * 21 20 19 38 38 H 1.09002 * 109.46665 * 299.99287 * 23 22 21 39 39 H 1.08998 * 109.47158 * 59.99159 * 23 22 21 40 40 H 1.09003 * 109.46940 * 180.02562 * 23 22 21 41 41 H 1.08001 * 126.30465 * 180.25823 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2528 6 6 4.2662 1.3463 -2.3394 7 1 3.8136 1.1310 -3.2961 8 6 5.1476 2.4131 -2.2120 9 7 5.2327 3.3127 -3.1662 10 14 6.2116 2.5683 -0.6845 11 1 5.9940 1.3896 0.1922 12 1 7.6411 2.6330 -1.0813 13 1 5.8454 3.8059 0.0502 14 6 4.0948 -0.7756 -1.3357 15 8 3.8928 -1.4659 -0.3548 16 6 4.4697 -1.4043 -2.6146 17 6 4.8729 -0.7349 -3.7922 18 7 5.1197 -1.6349 -4.7036 19 7 4.8893 -2.9043 -4.1618 20 6 5.0538 -4.1783 -4.8661 21 6 4.2199 -4.1632 -6.1488 22 8 4.3798 -5.4061 -6.8355 23 6 3.6390 -5.4964 -8.0542 24 6 4.4977 -2.7582 -2.8856 25 1 -0.3632 0.5139 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.6887 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8515 0.5681 0.8408 31 1 3.9786 2.1764 0.0889 32 1 4.6800 3.2323 -3.9592 33 1 4.9607 0.3343 -3.9159 34 1 6.1047 -4.3215 -5.1176 35 1 4.7193 -4.9938 -4.2249 36 1 3.1690 -4.0201 -5.8973 37 1 4.5543 -3.3477 -6.7900 38 1 2.5760 -5.3804 -7.8426 39 1 3.9620 -4.7088 -8.7350 40 1 3.8134 -6.4691 -8.5142 41 1 4.2489 -3.5531 -2.1981 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601626698.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:27:22 Heat of formation + Delta-G solvation = -25.419402 kcal Electronic energy + Delta-G solvation = -24590.388628 eV Core-core repulsion = 20894.822526 eV Total energy + Delta-G solvation = -3695.566102 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.68988 -38.53296 -38.05538 -36.94347 -34.80539 -33.55381 -32.03970 -29.92143 -29.70841 -28.35226 -26.43531 -25.81745 -24.46026 -23.55933 -22.57671 -21.04580 -20.12112 -18.88700 -17.97523 -16.93654 -16.36287 -16.18980 -15.86352 -15.54383 -15.33425 -15.05971 -14.89387 -14.46929 -14.30774 -13.80610 -13.65073 -13.31801 -13.08789 -12.64272 -12.34779 -12.11865 -11.98248 -11.86495 -11.59749 -11.52384 -11.43690 -11.24189 -10.79503 -10.38221 -10.31591 -9.91839 -9.90642 -9.50370 -9.12224 -9.04153 -8.91508 -8.53411 -7.95905 -7.66255 -6.69644 -4.23495 2.18825 2.64206 3.10757 3.24442 3.37239 3.52074 3.71280 4.23582 4.34711 4.47789 4.62468 4.69626 4.80354 5.01226 5.09284 5.12519 5.14836 5.34001 5.39918 5.45372 5.56517 5.58011 5.64866 5.83335 5.89269 5.95470 5.98604 6.02209 6.16212 6.26123 6.33713 6.56785 6.76871 6.82392 7.37598 7.38571 7.72358 7.80875 7.92470 8.26484 8.38475 9.01664 9.39821 9.90054 10.57589 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.014809 B = 0.004610 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.332033 B = 6071.768787 C = 7136.692266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.368 6.368 3 C 0.050 3.950 4 C 0.117 3.883 5 N -0.464 5.464 6 C -0.421 4.421 7 H 0.090 0.910 8 C 0.029 3.971 9 N -0.876 5.876 10 Si 1.044 2.956 11 H -0.271 1.271 12 H -0.285 1.285 13 H -0.281 1.281 14 C 0.570 3.430 15 O -0.589 6.589 16 C -0.247 4.247 17 C 0.094 3.906 18 N -0.328 5.328 19 N -0.379 5.379 20 C 0.141 3.859 21 C 0.052 3.948 22 O -0.393 6.393 23 C 0.035 3.965 24 C 0.096 3.904 25 H 0.032 0.968 26 H 0.033 0.967 27 H 0.077 0.923 28 H 0.042 0.958 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.275 0.725 33 H 0.225 0.775 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.042 0.958 39 H 0.044 0.956 40 H 0.087 0.913 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.674 -10.025 -2.847 11.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.286 6.286 3 C -0.028 4.028 4 C -0.006 4.006 5 N -0.185 5.185 6 C -0.549 4.549 7 H 0.107 0.893 8 C -0.180 4.180 9 N -0.508 5.508 10 Si 0.871 3.129 11 H -0.195 1.195 12 H -0.211 1.211 13 H -0.208 1.208 14 C 0.360 3.640 15 O -0.473 6.473 16 C -0.261 4.261 17 C -0.092 4.092 18 N -0.148 5.148 19 N -0.161 5.161 20 C 0.019 3.981 21 C -0.026 4.026 22 O -0.311 6.311 23 C -0.062 4.062 24 C -0.053 4.053 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.095 0.905 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.240 0.760 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.106 0.894 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -3.013 -10.050 -2.875 10.879 hybrid contribution -1.977 -0.165 -0.252 1.999 sum -4.990 -10.215 -3.126 11.791 Atomic orbital electron populations 1.22633 0.82992 1.01784 0.98998 1.88118 1.17789 1.27547 1.95127 1.22996 0.95629 0.84728 0.99437 1.21551 0.91178 0.97909 0.89974 1.43242 1.60121 1.04125 1.11050 1.20508 1.29286 1.14222 0.90864 0.89284 1.26497 0.95911 0.91881 1.03728 1.70804 1.39809 1.31615 1.08610 0.83954 0.76879 0.76675 0.75437 1.19546 1.21146 1.20769 1.17383 0.77992 0.82658 0.85984 1.90616 1.55311 1.63350 1.38036 1.20369 1.16590 0.91603 0.97581 1.25856 0.92875 1.01165 0.89270 1.77176 1.26540 0.87159 1.23915 1.48217 1.52844 1.06005 1.08986 1.21252 1.01690 0.81862 0.93283 1.22697 0.99435 0.86725 0.93727 1.87762 1.70349 1.36000 1.36999 1.22750 0.95277 1.02354 0.85822 1.22799 0.97844 0.98218 0.86409 0.94969 0.94838 0.90458 0.93969 0.92859 0.90426 0.90837 0.91387 0.75961 0.89149 0.88153 0.92742 0.91454 0.93952 0.93776 0.89419 0.80559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.37 -7.53 9.62 -38.58 -0.37 -7.90 16 3 C 0.05 0.97 6.28 37.16 0.23 1.20 16 4 C 0.12 2.55 4.14 -4.04 -0.02 2.54 16 5 N -0.46 -11.16 1.87 -116.04 -0.22 -11.37 16 6 C -0.42 -10.38 6.73 -14.98 -0.10 -10.48 16 7 H 0.09 2.29 5.85 -52.49 -0.31 1.98 16 8 C 0.03 0.74 5.37 -17.46 -0.09 0.65 16 9 N -0.88 -23.28 13.69 55.50 0.76 -22.52 16 10 Si 1.04 23.45 25.91 -169.99 -4.40 19.04 16 11 H -0.27 -6.02 6.23 56.52 0.35 -5.67 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 14 C 0.57 13.96 7.21 -12.55 -0.09 13.87 16 15 O -0.59 -15.33 15.85 1.90 0.03 -15.30 16 16 C -0.25 -5.47 6.02 -105.06 -0.63 -6.10 16 17 C 0.09 2.06 10.20 -16.97 -0.17 1.88 16 18 N -0.33 -6.55 12.33 30.87 0.38 -6.17 16 19 N -0.38 -6.46 3.65 -60.78 -0.22 -6.69 16 20 C 0.14 1.79 6.86 -4.04 -0.03 1.76 16 21 C 0.05 0.63 6.11 37.16 0.23 0.86 16 22 O -0.39 -4.55 10.70 -35.23 -0.38 -4.93 16 23 C 0.03 0.29 11.01 101.05 1.11 1.41 16 24 C 0.10 1.78 11.26 -16.53 -0.19 1.59 16 25 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.08 1.72 7.38 -51.93 -0.38 1.34 16 31 H 0.07 1.53 4.70 -51.93 -0.24 1.29 16 32 H 0.28 7.19 8.73 -40.82 -0.36 6.83 16 33 H 0.22 5.17 4.75 -52.49 -0.25 4.92 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.10 1.03 8.06 -51.93 -0.42 0.61 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.18 2.79 8.06 -52.49 -0.42 2.37 16 LS Contribution 343.37 15.07 5.17 5.17 Total: -1.00 -31.13 343.37 -3.76 -34.88 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.88 Total: 4.98 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: 1.36 Total: 10.79 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: 0.70 Total: -46.75 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.72 Total: -28.13 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -4.40 Total: 19.04 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.13 -3.76 -34.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601626698.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.464 kcal (2) G-P(sol) polarization free energy of solvation -31.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds