Wall clock time and date at job start Tue Mar 31 2020 04:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00011 * 2 1 4 4 C 1.53007 * 109.47191 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.46686 * 64.99989 * 4 3 2 6 6 C 1.36986 * 119.99885 * 90.00405 * 5 4 3 7 7 H 1.07999 * 119.99646 * 231.62263 * 6 5 4 8 8 C 1.38969 * 120.00137 * 51.89753 * 6 5 4 9 9 N 1.31411 * 119.99975 * 193.11652 * 8 6 5 10 10 Si 1.86806 * 119.99977 * 13.12218 * 8 6 5 11 11 H 1.48501 * 109.46919 * 3.67659 * 10 8 6 12 12 H 1.48496 * 109.47492 * 123.68124 * 10 8 6 13 13 H 1.48504 * 109.46946 * 243.68139 * 10 8 6 14 14 C 1.34775 * 120.00203 * 270.00047 * 5 4 3 15 15 O 1.21632 * 119.99627 * 356.82964 * 14 5 4 16 16 C 1.47360 * 120.00262 * 176.82747 * 14 5 4 17 17 C 1.41323 * 126.41723 * 7.27345 * 16 14 5 18 18 N 1.30443 * 108.02117 * 179.97438 * 17 16 14 19 19 N 1.39929 * 108.91781 * 0.02562 * 18 17 16 20 20 C 1.46502 * 125.75088 * 180.02562 * 19 18 17 21 21 C 1.53008 * 109.46861 * 304.97189 * 20 19 18 22 22 O 1.42896 * 109.46843 * 180.02562 * 21 20 19 23 23 C 1.42907 * 113.99876 * 180.02562 * 22 21 20 24 24 C 1.34281 * 108.49899 * 359.76019 * 19 18 17 25 25 H 1.09006 * 109.46506 * 299.99864 * 1 2 3 26 26 H 1.09000 * 109.47127 * 59.99150 * 1 2 3 27 27 H 1.08994 * 109.47645 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47610 * 60.00460 * 3 2 1 29 29 H 1.09003 * 109.47344 * 300.00101 * 3 2 1 30 30 H 1.08995 * 109.46807 * 305.00694 * 4 3 2 31 31 H 1.08997 * 109.47032 * 184.99717 * 4 3 2 32 32 H 0.96993 * 120.00134 * 0.02562 * 9 8 6 33 33 H 1.07993 * 125.98817 * 359.94143 * 17 16 14 34 34 H 1.09001 * 109.47494 * 64.97040 * 20 19 18 35 35 H 1.08998 * 109.47271 * 184.97540 * 20 19 18 36 36 H 1.09001 * 109.46944 * 300.00187 * 21 20 19 37 37 H 1.08998 * 109.46892 * 60.00118 * 21 20 19 38 38 H 1.09002 * 109.46665 * 299.99287 * 23 22 21 39 39 H 1.08998 * 109.47158 * 59.99159 * 23 22 21 40 40 H 1.09003 * 109.46940 * 180.02562 * 23 22 21 41 41 H 1.08001 * 126.30465 * 180.25823 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2528 6 6 4.2662 1.3463 -2.3394 7 1 3.8136 1.1310 -3.2961 8 6 5.1476 2.4131 -2.2120 9 7 5.2327 3.3127 -3.1662 10 14 6.2116 2.5683 -0.6845 11 1 5.9940 1.3896 0.1922 12 1 7.6411 2.6330 -1.0813 13 1 5.8454 3.8059 0.0502 14 6 4.0948 -0.7756 -1.3357 15 8 3.8928 -1.4659 -0.3548 16 6 4.4697 -1.4043 -2.6146 17 6 4.8729 -0.7349 -3.7922 18 7 5.1197 -1.6349 -4.7036 19 7 4.8893 -2.9043 -4.1618 20 6 5.0538 -4.1783 -4.8661 21 6 4.2199 -4.1632 -6.1488 22 8 4.3798 -5.4061 -6.8355 23 6 3.6390 -5.4964 -8.0542 24 6 4.4977 -2.7582 -2.8856 25 1 -0.3632 0.5139 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.6887 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8515 0.5681 0.8408 31 1 3.9786 2.1764 0.0889 32 1 4.6800 3.2323 -3.9592 33 1 4.9607 0.3343 -3.9159 34 1 6.1047 -4.3215 -5.1176 35 1 4.7193 -4.9938 -4.2249 36 1 3.1690 -4.0201 -5.8973 37 1 4.5543 -3.3477 -6.7900 38 1 2.5760 -5.3804 -7.8426 39 1 3.9620 -4.7088 -8.7350 40 1 3.8134 -6.4691 -8.5142 41 1 4.2489 -3.5531 -2.1981 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601626698.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:27:18 Heat of formation + Delta-G solvation = -47.452437 kcal Electronic energy + Delta-G solvation = -24591.344052 eV Core-core repulsion = 20894.822526 eV Total energy + Delta-G solvation = -3696.521526 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -42.24284 -40.25080 -38.98808 -38.46808 -36.68366 -34.82987 -33.94953 -31.55516 -31.09451 -29.71431 -27.37890 -27.04134 -26.38888 -24.82774 -24.02718 -22.70967 -21.57719 -20.70740 -19.69815 -18.21318 -17.67920 -17.33615 -17.26987 -17.01168 -16.78627 -16.39906 -16.31439 -16.01796 -15.54642 -15.45518 -15.28367 -14.68419 -14.44218 -14.30559 -13.99211 -13.59419 -13.43017 -13.12977 -12.97840 -12.77159 -12.66679 -12.46333 -12.35496 -11.92798 -11.85269 -11.67036 -11.39086 -10.96602 -10.79829 -10.56958 -10.42235 -10.38107 -9.69161 -9.45478 -8.67576 -6.21582 0.67446 1.36040 1.37411 1.44237 1.55982 1.74068 2.38162 2.69490 2.77082 2.80583 2.99479 3.13462 3.63585 3.84262 3.97785 4.09127 4.20729 4.22983 4.32536 4.40927 4.42670 4.44815 4.50641 4.52234 4.56209 4.61405 4.62348 4.63396 4.79322 4.80563 4.80917 4.91539 5.08173 5.67112 5.80615 5.92205 6.02982 6.05179 6.34342 6.41794 6.68638 7.08163 7.50448 8.01186 8.57990 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.014809 B = 0.004610 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.332033 B = 6071.768787 C = 7136.692266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.402 6.402 3 C 0.056 3.944 4 C 0.109 3.891 5 N -0.473 5.473 6 C -0.404 4.404 7 H 0.072 0.928 8 C 0.000 4.000 9 N -0.902 5.902 10 Si 1.072 2.928 11 H -0.270 1.270 12 H -0.288 1.288 13 H -0.261 1.261 14 C 0.563 3.437 15 O -0.610 6.610 16 C -0.290 4.290 17 C 0.084 3.916 18 N -0.336 5.336 19 N -0.362 5.362 20 C 0.133 3.867 21 C 0.060 3.940 22 O -0.402 6.402 23 C 0.026 3.974 24 C 0.121 3.879 25 H 0.057 0.943 26 H 0.036 0.964 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.268 0.732 33 H 0.202 0.798 34 H 0.102 0.898 35 H 0.134 0.866 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.109 0.891 41 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.187 -11.764 -2.357 13.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.321 6.321 3 C -0.022 4.022 4 C -0.014 4.014 5 N -0.194 5.194 6 C -0.532 4.532 7 H 0.089 0.911 8 C -0.205 4.205 9 N -0.536 5.536 10 Si 0.896 3.104 11 H -0.195 1.195 12 H -0.215 1.215 13 H -0.186 1.186 14 C 0.354 3.646 15 O -0.497 6.497 16 C -0.305 4.305 17 C -0.102 4.102 18 N -0.157 5.157 19 N -0.143 5.143 20 C 0.012 3.988 21 C -0.018 4.018 22 O -0.320 6.320 23 C -0.069 4.069 24 C -0.030 4.030 25 H 0.075 0.925 26 H 0.055 0.945 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.218 0.782 34 H 0.120 0.880 35 H 0.152 0.848 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.127 0.873 41 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -3.543 -11.785 -2.416 12.541 hybrid contribution -1.874 0.175 -0.517 1.952 sum -5.417 -11.610 -2.934 13.143 Atomic orbital electron populations 1.22847 0.80502 1.03106 1.00372 1.88058 1.20611 1.28047 1.95410 1.22894 0.93878 0.84836 1.00562 1.21693 0.93247 0.97815 0.88638 1.43379 1.60335 1.04239 1.11459 1.20326 1.28563 1.13642 0.90694 0.91052 1.27252 0.96515 0.91747 1.04963 1.70867 1.40779 1.32861 1.09097 0.83576 0.75624 0.77499 0.73707 1.19457 1.21518 1.18603 1.17741 0.77531 0.82733 0.86601 1.90576 1.56528 1.63644 1.38906 1.20409 1.19658 0.93363 0.97026 1.25405 0.94155 1.00686 0.89905 1.77102 1.26615 0.88267 1.23683 1.48508 1.50587 1.06412 1.08776 1.21687 1.02794 0.80327 0.93951 1.22495 0.99084 0.86843 0.93364 1.87742 1.71014 1.35193 1.38065 1.22985 0.95443 1.03706 0.84809 1.23173 0.95385 0.97541 0.86933 0.92458 0.94491 0.89267 0.90401 0.93979 0.91055 0.90222 0.92221 0.78183 0.87961 0.84762 0.92886 0.92983 0.93249 0.93557 0.87304 0.77404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.06 16 2 O -0.40 -16.08 9.62 -145.78 -1.40 -17.48 16 3 C 0.06 2.11 6.28 71.98 0.45 2.56 16 4 C 0.11 4.70 4.14 86.38 0.36 5.06 16 5 N -0.47 -22.97 1.87 -639.29 -1.20 -24.17 16 6 C -0.40 -20.46 6.73 84.06 0.57 -19.89 16 7 H 0.07 3.85 5.85 -2.91 -0.02 3.84 16 8 C 0.00 0.00 5.37 84.93 0.46 0.46 16 9 N -0.90 -49.04 13.69 21.67 0.30 -48.74 16 10 Si 1.07 47.34 25.91 68.60 1.78 49.12 16 11 H -0.27 -11.79 6.23 99.48 0.62 -11.17 16 12 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 13 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 14 C 0.56 27.72 7.21 86.64 0.62 28.35 16 15 O -0.61 -31.62 15.85 -0.93 -0.01 -31.64 16 16 C -0.29 -12.85 6.02 -20.15 -0.12 -12.97 16 17 C 0.08 3.74 10.20 85.66 0.87 4.62 16 18 N -0.34 -13.35 12.33 -56.26 -0.69 -14.04 16 19 N -0.36 -11.68 3.65 -346.21 -1.26 -12.95 16 20 C 0.13 2.97 6.86 86.38 0.59 3.56 16 21 C 0.06 1.35 6.11 71.98 0.44 1.79 16 22 O -0.40 -8.34 10.70 -148.98 -1.59 -9.94 16 23 C 0.03 0.39 11.01 113.37 1.25 1.64 16 24 C 0.12 4.25 11.26 84.29 0.95 5.20 16 25 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.07 3.14 7.38 -2.39 -0.02 3.13 16 31 H 0.08 3.27 4.70 -2.39 -0.01 3.26 16 32 H 0.27 14.52 8.73 -92.71 -0.81 13.71 16 33 H 0.20 9.80 4.75 -2.91 -0.01 9.78 16 34 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.13 2.18 8.06 -2.39 -0.02 2.16 16 36 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.21 5.89 8.06 -2.91 -0.02 5.87 16 Total: -1.00 -67.70 343.37 4.50 -63.20 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 0.91 Total: 24.21 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: 7.69 Total: 22.43 kcal Atomic # 7 Polarization: -97.04 SS G_CDS: -2.86 Total: -99.90 kcal Atomic # 8 Polarization: -56.04 SS G_CDS: -3.01 Total: -59.05 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 1.78 Total: 49.12 kcal Total: -67.70 4.50 -63.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601626698.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.745 kcal (2) G-P(sol) polarization free energy of solvation -67.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds