Wall clock time and date at job start Tue Mar 31 2020 04:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 111.00306 * 2 1 4 4 C 1.50701 * 109.46993 * 66.04420 * 3 2 1 5 5 H 1.07994 * 120.00328 * 0.02562 * 4 3 2 6 6 C 1.37887 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00027 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99584 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47468 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47108 * 120.00613 * 8 6 4 11 11 H 1.48507 * 109.47091 * 240.00414 * 8 6 4 12 12 C 1.46906 * 110.99925 * 236.04735 * 2 1 3 13 13 C 1.52998 * 109.47197 * 199.76710 * 12 2 1 14 14 H 1.09003 * 109.47068 * 302.16128 * 13 12 2 15 15 O 1.42905 * 109.47031 * 62.15935 * 13 12 2 16 16 C 1.52999 * 109.47318 * 182.15693 * 13 12 2 17 17 N 1.46901 * 109.47409 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00024 * 180.02562 * 17 16 13 19 19 C 1.50702 * 109.47178 * 180.02562 * 18 17 16 20 20 C 1.38145 * 119.60385 * 94.99830 * 19 18 17 21 21 C 1.38701 * 119.22006 * 179.97438 * 20 19 18 22 22 C 1.38543 * 118.45423 * 359.97438 * 21 20 19 23 23 C 1.38515 * 119.14150 * 0.02562 * 22 21 20 24 24 F 1.35104 * 119.65130 * 179.97438 * 23 22 21 25 25 N 1.31908 * 119.59764 * 274.72826 * 19 18 17 26 26 H 1.08999 * 109.47031 * 54.96694 * 1 2 3 27 27 H 1.09002 * 109.47006 * 174.96219 * 1 2 3 28 28 H 1.08993 * 109.46940 * 294.96483 * 1 2 3 29 29 H 1.08994 * 109.47530 * 186.04788 * 3 2 1 30 30 H 1.09008 * 109.47253 * 306.04661 * 3 2 1 31 31 H 0.97000 * 119.99606 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.46958 * 319.76806 * 12 2 1 33 33 H 1.09002 * 109.47247 * 79.76447 * 12 2 1 34 34 H 0.96701 * 114.00201 * 59.99801 * 15 13 12 35 35 H 1.08995 * 109.47044 * 300.00138 * 16 13 12 36 36 H 1.09002 * 109.46836 * 59.99632 * 16 13 12 37 37 H 1.00901 * 110.99676 * 56.04861 * 17 16 13 38 38 H 1.09006 * 109.47427 * 300.00241 * 18 17 16 39 39 H 1.08997 * 109.47301 * 59.99976 * 18 17 16 40 40 H 1.07997 * 120.38683 * 359.96169 * 20 19 18 41 41 H 1.08001 * 120.77358 * 180.02562 * 21 20 19 42 42 H 1.08009 * 120.43027 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0278 3.3491 1.5289 7 7 2.7130 4.0015 0.6154 8 14 1.5840 4.1863 3.1387 9 1 0.8166 3.2438 3.9918 10 1 2.8259 4.5929 3.8441 11 1 0.7569 5.3880 2.8601 12 6 1.9955 -0.7660 -1.1377 13 6 3.4455 -1.1649 -0.8566 14 1 4.0400 -0.2695 -0.6748 15 8 3.4925 -2.0098 0.2950 16 6 4.0109 -1.9161 -2.0636 17 7 5.4034 -2.2986 -1.7941 18 6 5.9805 -3.0231 -2.9342 19 6 7.4060 -3.3987 -2.6212 20 6 7.6847 -4.6496 -2.1055 21 6 8.9996 -4.9870 -1.8209 22 6 9.9897 -4.0498 -2.0672 23 6 9.6359 -2.8150 -2.5855 24 9 10.5930 -1.8932 -2.8291 25 7 8.3732 -2.5309 -2.8481 26 1 -0.3633 0.5899 -0.8415 27 1 -0.3633 -1.0237 -0.0902 28 1 -0.3633 0.4337 0.9316 29 1 3.0797 1.3443 -0.1083 30 1 1.5612 1.9273 -0.8310 31 1 2.9876 4.9176 0.7775 32 1 1.3932 -1.6630 -1.2815 33 1 1.9552 -0.1531 -2.0382 34 1 2.9842 -2.8273 0.2040 35 1 3.4165 -2.8115 -2.2453 36 1 3.9750 -1.2717 -2.9420 37 1 5.4714 -2.8432 -0.9473 38 1 5.4001 -3.9264 -3.1222 39 1 5.9579 -2.3862 -3.8184 40 1 6.8881 -5.3563 -1.9259 41 1 9.2459 -5.9581 -1.4175 42 1 11.0242 -4.2788 -1.8570 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819182934.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:05 Heat of formation + Delta-G solvation = -46.702715 kcal Electronic energy + Delta-G solvation = -23194.158600 eV Core-core repulsion = 19510.042374 eV Total energy + Delta-G solvation = -3684.116226 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.20414 -40.47435 -38.23916 -36.11313 -35.02584 -33.01240 -32.44126 -31.73194 -29.63651 -27.33888 -26.81223 -24.80498 -23.78573 -23.26937 -22.27273 -21.47541 -20.03276 -18.08222 -17.53469 -16.55592 -16.51335 -16.31019 -16.12966 -15.87878 -15.13216 -14.78649 -14.64919 -14.46623 -14.06958 -13.99711 -13.56051 -13.39501 -13.28924 -13.00498 -12.73092 -12.36616 -12.13364 -11.94897 -11.82349 -11.36617 -11.11702 -10.91205 -10.68009 -10.58261 -10.35968 -10.34141 -9.94445 -9.72510 -9.62142 -9.28632 -9.07312 -8.49762 -8.36874 -7.17181 -5.96203 -3.96704 0.54389 0.78517 3.14060 3.27021 3.35944 3.43148 3.48213 3.97871 4.13709 4.35824 4.49074 4.56479 4.60537 4.76726 4.90316 5.01076 5.08613 5.26496 5.31603 5.37553 5.42227 5.43595 5.57885 5.60425 5.66519 5.73483 5.80594 6.06101 6.09705 6.26651 6.37113 6.55000 6.72987 6.83943 7.27326 7.33592 7.36066 7.42880 7.85446 8.07632 8.15398 8.25290 8.60605 9.10658 9.67007 11.14956 Molecular weight = 297.16amu Principal moments of inertia in cm(-1) A = 0.017113 B = 0.002785 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.837581 B =10050.572729 C =11060.485868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.532 5.532 3 C 0.192 3.808 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.286 1.286 12 C 0.027 3.973 13 C 0.116 3.884 14 H 0.112 0.888 15 O -0.541 6.541 16 C 0.032 3.968 17 N -0.674 5.674 18 C 0.106 3.894 19 C 0.174 3.826 20 C -0.180 4.180 21 C -0.046 4.046 22 C -0.198 4.198 23 C 0.311 3.689 24 F -0.112 7.112 25 N -0.493 5.493 26 H 0.011 0.989 27 H 0.041 0.959 28 H 0.072 0.928 29 H 0.032 0.968 30 H -0.011 1.011 31 H 0.260 0.740 32 H 0.058 0.942 33 H 0.033 0.967 34 H 0.358 0.642 35 H 0.031 0.969 36 H 0.082 0.918 37 H 0.349 0.651 38 H 0.051 0.949 39 H 0.093 0.907 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.137 -21.768 -8.659 25.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.256 5.256 3 C 0.067 3.933 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.103 4.103 13 C 0.056 3.944 14 H 0.130 0.870 15 O -0.343 6.343 16 C -0.098 4.098 17 N -0.307 5.307 18 C -0.023 4.023 19 C 0.035 3.965 20 C -0.200 4.200 21 C -0.072 4.072 22 C -0.220 4.220 23 C 0.157 3.843 24 F -0.091 7.091 25 N -0.208 5.208 26 H 0.030 0.970 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.007 0.993 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.203 0.797 35 H 0.049 0.951 36 H 0.100 0.900 37 H 0.168 0.832 38 H 0.069 0.931 39 H 0.112 0.888 40 H 0.160 0.840 41 H 0.164 0.836 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 9.848 -19.860 -8.582 23.771 hybrid contribution -0.749 -0.798 0.107 1.099 sum 9.099 -20.658 -8.474 24.112 Atomic orbital electron populations 1.22190 0.88887 0.98495 1.01163 1.62040 1.06472 1.17937 1.39125 1.19801 0.95597 0.81371 0.96567 1.21180 1.34565 0.96788 1.01672 0.91886 1.24996 0.95365 0.97418 0.96958 1.69968 1.38494 1.11379 1.34024 0.86451 0.78133 0.79224 0.83665 1.19690 1.21001 1.21212 1.22667 0.95795 0.98069 0.93808 1.21996 0.95250 0.93631 0.83539 0.86985 1.86719 1.73780 1.34329 1.39499 1.22705 0.87569 0.99129 1.00412 1.60220 1.18692 1.47193 1.04552 1.20860 0.87726 0.97655 0.96067 1.20888 0.94279 0.88584 0.92719 1.22048 0.97931 0.98071 1.01988 1.21465 0.91895 0.99210 0.94603 1.21853 1.02367 0.93462 1.04301 1.18181 0.84511 0.85570 0.96065 1.91644 1.59924 1.65887 1.91673 1.66811 0.99225 1.36061 1.18655 0.97036 0.94008 0.90946 0.94971 0.99340 0.93028 0.92319 0.94856 0.79744 0.95132 0.89972 0.83159 0.93135 0.88847 0.83978 0.83602 0.83497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 9.31 60.07 0.56 1.36 16 2 N -0.53 -11.55 4.59 -244.37 -1.12 -12.67 16 3 C 0.19 5.11 4.55 -4.98 -0.02 5.08 16 4 C -0.50 -14.56 8.58 -34.44 -0.30 -14.86 16 5 H 0.06 1.81 7.10 -52.49 -0.37 1.44 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 8 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 9 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 12 C 0.03 0.45 4.65 -3.82 -0.02 0.43 16 13 C 0.12 1.87 3.31 -26.73 -0.09 1.78 16 14 H 0.11 2.28 6.73 -51.93 -0.35 1.93 16 15 O -0.54 -8.68 12.58 -35.23 -0.44 -9.13 16 16 C 0.03 0.38 5.39 -3.82 -0.02 0.36 16 17 N -0.67 -8.28 6.49 -115.06 -0.75 -9.03 16 18 C 0.11 1.06 5.99 -4.98 -0.03 1.03 16 19 C 0.17 1.85 6.29 -82.59 -0.52 1.33 16 20 C -0.18 -1.37 9.72 -39.44 -0.38 -1.75 16 21 C -0.05 -0.30 10.17 -39.30 -0.40 -0.70 16 22 C -0.20 -1.62 10.09 -39.37 -0.40 -2.02 16 23 C 0.31 3.66 8.41 -17.35 -0.15 3.51 16 24 F -0.11 -1.41 17.29 2.25 0.04 -1.37 16 25 N -0.49 -6.57 10.29 -9.81 -0.10 -6.67 16 26 H 0.01 0.22 8.08 -51.93 -0.42 -0.20 16 27 H 0.04 0.67 7.85 -51.93 -0.41 0.26 16 28 H 0.07 1.51 7.01 -51.93 -0.36 1.14 16 29 H 0.03 0.92 6.60 -51.93 -0.34 0.58 16 30 H -0.01 -0.32 8.07 -51.92 -0.42 -0.74 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.06 0.83 7.75 -51.93 -0.40 0.43 16 33 H 0.03 0.58 8.00 -51.93 -0.42 0.17 16 34 H 0.36 4.14 9.05 45.56 0.41 4.56 16 35 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.35 4.14 8.11 -39.29 -0.32 3.82 16 38 H 0.05 0.37 8.04 -51.93 -0.42 -0.05 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.15 0.48 8.06 -52.49 -0.42 0.06 16 42 H 0.15 0.82 8.06 -52.48 -0.42 0.39 16 LS Contribution 356.60 15.07 5.37 5.37 Total: -1.00 -34.41 356.60 -8.63 -43.04 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -5.49 Total: 2.88 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -1.86 Total: -2.97 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -1.23 Total: -55.07 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.44 Total: -9.13 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.41 -8.63 -43.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819182934.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.658 kcal (2) G-P(sol) polarization free energy of solvation -34.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds